Wall clock time and date at job start Sat Apr 11 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46758 * 2 1 4 4 H 1.09000 * 109.47637 * 55.00204 * 3 2 1 5 5 C 1.50707 * 109.47148 * 175.00082 * 3 2 1 6 6 H 1.07998 * 120.00006 * 119.99828 * 5 3 2 7 7 C 1.37880 * 119.99561 * 300.00291 * 5 3 2 8 8 N 1.31517 * 119.99748 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00215 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46849 * 90.00252 * 9 7 5 11 11 H 1.48497 * 109.47157 * 210.00346 * 9 7 5 12 12 H 1.48500 * 109.47358 * 330.00247 * 9 7 5 13 13 N 1.46496 * 109.47259 * 294.99981 * 3 2 1 14 14 C 1.34774 * 120.00207 * 85.00019 * 13 3 2 15 15 O 1.21588 * 120.00093 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00227 * 179.97438 * 14 13 3 17 17 C 1.39954 * 120.00053 * 184.64051 * 16 14 13 18 18 C 1.38889 * 120.06840 * 324.66365 * 17 16 14 19 19 C 1.38095 * 119.92574 * 179.71887 * 18 17 16 20 20 C 1.38300 * 120.07155 * 0.57832 * 19 18 17 21 21 C 1.38262 * 120.13807 * 359.67551 * 20 19 18 22 22 C 1.50700 * 119.96425 * 180.02562 * 21 20 19 23 23 S 1.81400 * 109.47182 * 270.02548 * 22 21 20 24 24 C 1.81395 * 101.92098 * 180.02562 * 23 22 21 25 25 O 1.42105 * 108.57797 * 294.48608 * 23 22 21 26 26 O 1.42101 * 108.57984 * 65.51001 * 23 22 21 27 27 C 1.38138 * 120.07052 * 0.04579 * 21 20 19 28 28 H 1.09008 * 109.46946 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47159 * 299.99461 * 1 2 3 30 30 H 1.08997 * 109.47369 * 60.00398 * 1 2 3 31 31 H 1.09000 * 109.46806 * 239.99848 * 2 1 3 32 32 H 1.09005 * 109.46857 * 120.00000 * 2 1 3 33 33 H 0.96991 * 119.99838 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00195 * 264.99733 * 13 3 2 35 35 H 0.96995 * 120.00281 * 4.63943 * 16 14 13 36 36 H 1.08000 * 120.03735 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.95961 * 180.28146 * 19 18 17 38 38 H 1.08000 * 119.93279 * 179.69673 * 20 19 18 39 39 H 1.08998 * 109.46993 * 30.02436 * 22 21 20 40 40 H 1.09004 * 109.47262 * 150.02362 * 22 21 20 41 41 H 1.09000 * 109.47908 * 59.99814 * 24 23 22 42 42 H 1.09007 * 109.47231 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47185 * 299.99484 * 24 23 22 44 44 H 1.07999 * 120.03337 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8746 -1.3261 2.2644 11 1 3.7941 0.2359 3.8754 12 1 1.7881 0.8092 2.6395 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6325 -0.4318 16 7 0.0787 3.2673 -2.5184 17 6 -1.1455 3.9398 -2.6064 18 6 -2.2570 3.4531 -1.9306 19 6 -3.4621 4.1223 -2.0147 20 6 -3.5658 5.2692 -2.7806 21 6 -2.4625 5.7533 -3.4588 22 6 -2.5798 7.0037 -4.2916 23 16 -3.0491 6.5595 -5.9866 24 6 -3.1295 8.1833 -6.7910 25 8 -1.9871 5.8176 -6.5707 26 8 -4.3552 6.0001 -5.9630 27 6 -1.2528 5.0918 -3.3740 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 2.1132 34 1 2.2719 2.1232 -1.9977 35 1 0.6706 3.2352 -3.2861 36 1 -2.1779 2.5546 -1.3366 37 1 -4.3256 3.7469 -1.4858 38 1 -4.5106 5.7881 -2.8488 39 1 -3.3409 7.6557 -3.8630 40 1 -1.6216 7.5232 -4.3042 41 1 -2.1550 8.6678 -6.7301 42 1 -3.4073 8.0571 -7.8375 43 1 -3.8743 8.8010 -6.2891 44 1 -0.3912 5.4706 -3.9037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157307718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:31 Heat of formation + Delta-G solvation = -62.868140 kcal Electronic energy + Delta-G solvation = -27224.647545 eV Core-core repulsion = 23270.045801 eV Total energy + Delta-G solvation = -3954.601744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45547 -38.86745 -37.28857 -36.31984 -35.87768 -34.45303 -32.98689 -32.34293 -31.51669 -30.14223 -29.51584 -27.56063 -27.24239 -23.14498 -22.49735 -22.31512 -20.68019 -19.84783 -19.21479 -18.40546 -17.50854 -17.01876 -16.52967 -16.34399 -16.19640 -16.13360 -15.61880 -15.16481 -14.71034 -14.45165 -14.03338 -13.76394 -13.67794 -13.55303 -13.36725 -13.20301 -12.96719 -12.87788 -12.45088 -12.36967 -12.29051 -12.02834 -11.89825 -11.80215 -11.56516 -11.41717 -11.10250 -11.03812 -10.92747 -10.65806 -10.14696 -9.93032 -9.64763 -9.39738 -9.24604 -8.83047 -8.78492 -8.26684 -7.89682 -6.23222 -4.25950 -0.49214 1.30500 1.31380 2.36126 3.00133 3.22445 3.26380 3.34602 3.39600 3.51050 3.59061 3.87362 4.12603 4.23469 4.29744 4.32406 4.59992 4.70506 4.93340 5.02813 5.10522 5.10731 5.15976 5.32348 5.48963 5.62478 5.85294 5.96299 6.02269 6.15856 6.24097 6.33595 6.46344 6.55932 6.63937 6.69270 6.79916 6.93097 7.08355 7.10827 7.27906 7.45854 7.50041 8.24064 8.57406 8.75504 9.04460 9.37529 10.88803 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.002346 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.412762 B =11932.362553 C =12487.004223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.259 3.741 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.710 5.710 14 C 0.695 3.305 15 O -0.578 6.578 16 N -0.695 5.695 17 C 0.182 3.818 18 C -0.108 4.108 19 C -0.100 4.100 20 C -0.126 4.126 21 C -0.081 4.081 22 C -0.558 4.558 23 S 2.415 3.585 24 C -0.661 4.661 25 O -0.932 6.932 26 O -0.933 6.933 27 C -0.136 4.136 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.406 0.594 36 H 0.148 0.852 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.547 14.172 -14.535 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.361 5.361 14 C 0.396 3.604 15 O -0.456 6.456 16 N -0.343 5.343 17 C 0.086 3.914 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.146 4.146 21 C -0.083 4.083 22 C -0.685 4.685 23 S 2.597 3.403 24 C -0.810 4.810 25 O -0.929 6.929 26 O -0.930 6.930 27 C -0.159 4.159 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.241 0.759 36 H 0.165 0.835 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.126 13.230 -13.891 26.392 hybrid contribution 0.488 0.471 0.333 0.756 sum -17.638 13.700 -13.558 26.127 Atomic orbital electron populations 1.21863 0.96896 0.98973 1.02249 1.22313 0.94455 0.99996 1.01126 1.19081 0.95462 0.88202 0.81703 0.93180 1.21034 0.88543 1.39891 1.07905 0.90189 1.24823 0.94882 0.95125 0.97662 1.69863 1.08697 1.44444 1.29837 0.86897 0.80975 0.79968 0.80863 1.20208 1.22174 1.18387 1.45452 1.13384 1.58467 1.18818 1.16051 0.83502 0.78682 0.82155 1.90882 1.51845 1.64327 1.38542 1.42799 1.19732 1.57002 1.14788 1.17447 0.85171 0.91270 0.97555 1.21563 0.90611 1.01293 0.99451 1.21053 0.97590 0.95034 0.98225 1.21011 0.97871 0.97692 0.98007 1.18473 0.94489 0.94670 1.00677 1.29266 1.13105 1.04882 1.21247 1.08249 0.75830 0.78043 0.78176 1.30339 1.11531 1.24421 1.14690 1.93609 1.56825 1.67354 1.75112 1.93601 1.38651 1.74891 1.85902 1.20793 0.97786 0.94499 1.02775 0.95034 0.92828 0.92972 0.92289 0.92723 0.92243 0.77377 0.75894 0.83451 0.85311 0.85540 0.84117 0.84134 0.85307 0.85266 0.85370 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.19 16 3 C 0.26 6.00 1.83 -69.08 -0.13 5.88 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 5 C -0.54 -14.21 9.31 -34.44 -0.32 -14.53 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 9 Si 0.88 21.52 24.41 -169.99 -4.15 17.37 16 10 H -0.28 -6.51 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.71 -13.61 5.03 -59.82 -0.30 -13.91 16 14 C 0.70 12.79 6.97 -86.92 -0.61 12.18 16 15 O -0.58 -12.23 10.93 5.29 0.06 -12.17 16 16 N -0.70 -10.07 5.34 -14.22 -0.08 -10.15 16 17 C 0.18 2.61 6.29 -83.69 -0.53 2.09 16 18 C -0.11 -1.59 8.69 -39.39 -0.34 -1.93 16 19 C -0.10 -1.22 10.04 -39.61 -0.40 -1.62 16 20 C -0.13 -1.37 9.70 -39.55 -0.38 -1.75 16 21 C -0.08 -0.85 5.14 -104.65 -0.54 -1.39 16 22 C -0.56 -3.22 5.93 36.01 0.21 -3.01 16 23 S 2.41 16.75 5.34 -107.50 -0.57 16.18 16 24 C -0.66 -1.82 10.62 101.05 1.07 -0.75 16 25 O -0.93 -10.21 18.10 -57.83 -1.05 -11.25 16 26 O -0.93 -9.99 18.10 -57.83 -1.05 -11.04 16 27 C -0.14 -1.64 9.62 -39.40 -0.38 -2.02 16 28 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 30 H 0.05 1.01 5.65 -51.93 -0.29 0.72 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.39 6.58 8.56 -40.82 -0.35 6.23 16 35 H 0.41 4.61 8.84 -40.82 -0.36 4.25 16 36 H 0.15 2.42 6.24 -52.49 -0.33 2.10 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.14 0.46 8.08 -51.92 -0.42 0.04 16 41 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 42 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 44 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -37.41 369.21 -9.12 -46.53 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.07 Total: 8.72 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.25 Total: -10.46 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.40 Total: -49.44 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -2.04 Total: -34.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.15 Total: 17.37 kcal Atomic # 16 Polarization: 16.75 SS G_CDS: -0.57 Total: 16.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.41 -9.12 -46.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157307718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.339 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds