Wall clock time and date at job start Sat Apr 11 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46758 * 2 1 4 4 H 1.09000 * 109.47637 * 55.00204 * 3 2 1 5 5 C 1.50707 * 109.47148 * 175.00082 * 3 2 1 6 6 H 1.07998 * 120.00006 * 119.99828 * 5 3 2 7 7 C 1.37880 * 119.99561 * 300.00291 * 5 3 2 8 8 N 1.31517 * 119.99748 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00215 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46849 * 90.00252 * 9 7 5 11 11 H 1.48497 * 109.47157 * 210.00346 * 9 7 5 12 12 H 1.48500 * 109.47358 * 330.00247 * 9 7 5 13 13 N 1.46496 * 109.47259 * 294.99981 * 3 2 1 14 14 C 1.34774 * 120.00207 * 85.00019 * 13 3 2 15 15 O 1.21588 * 120.00093 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00227 * 179.97438 * 14 13 3 17 17 C 1.39954 * 120.00053 * 184.64051 * 16 14 13 18 18 C 1.38889 * 120.06840 * 324.66365 * 17 16 14 19 19 C 1.38095 * 119.92574 * 179.71887 * 18 17 16 20 20 C 1.38300 * 120.07155 * 0.57832 * 19 18 17 21 21 C 1.38262 * 120.13807 * 359.67551 * 20 19 18 22 22 C 1.50700 * 119.96425 * 180.02562 * 21 20 19 23 23 S 1.81400 * 109.47182 * 270.02548 * 22 21 20 24 24 C 1.81395 * 101.92098 * 180.02562 * 23 22 21 25 25 O 1.42105 * 108.57797 * 294.48608 * 23 22 21 26 26 O 1.42101 * 108.57984 * 65.51001 * 23 22 21 27 27 C 1.38138 * 120.07052 * 0.04579 * 21 20 19 28 28 H 1.09008 * 109.46946 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47159 * 299.99461 * 1 2 3 30 30 H 1.08997 * 109.47369 * 60.00398 * 1 2 3 31 31 H 1.09000 * 109.46806 * 239.99848 * 2 1 3 32 32 H 1.09005 * 109.46857 * 120.00000 * 2 1 3 33 33 H 0.96991 * 119.99838 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00195 * 264.99733 * 13 3 2 35 35 H 0.96995 * 120.00281 * 4.63943 * 16 14 13 36 36 H 1.08000 * 120.03735 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.95961 * 180.28146 * 19 18 17 38 38 H 1.08000 * 119.93279 * 179.69673 * 20 19 18 39 39 H 1.08998 * 109.46993 * 30.02436 * 22 21 20 40 40 H 1.09004 * 109.47262 * 150.02362 * 22 21 20 41 41 H 1.09000 * 109.47908 * 59.99814 * 24 23 22 42 42 H 1.09007 * 109.47231 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47185 * 299.99484 * 24 23 22 44 44 H 1.07999 * 120.03337 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8746 -1.3261 2.2644 11 1 3.7941 0.2359 3.8754 12 1 1.7881 0.8092 2.6395 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6325 -0.4318 16 7 0.0787 3.2673 -2.5184 17 6 -1.1455 3.9398 -2.6064 18 6 -2.2570 3.4531 -1.9306 19 6 -3.4621 4.1223 -2.0147 20 6 -3.5658 5.2692 -2.7806 21 6 -2.4625 5.7533 -3.4588 22 6 -2.5798 7.0037 -4.2916 23 16 -3.0491 6.5595 -5.9866 24 6 -3.1295 8.1833 -6.7910 25 8 -1.9871 5.8176 -6.5707 26 8 -4.3552 6.0001 -5.9630 27 6 -1.2528 5.0918 -3.3740 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 2.1132 34 1 2.2719 2.1232 -1.9977 35 1 0.6706 3.2352 -3.2861 36 1 -2.1779 2.5546 -1.3366 37 1 -4.3256 3.7469 -1.4858 38 1 -4.5106 5.7881 -2.8488 39 1 -3.3409 7.6557 -3.8630 40 1 -1.6216 7.5232 -4.3042 41 1 -2.1550 8.6678 -6.7301 42 1 -3.4073 8.0571 -7.8375 43 1 -3.8743 8.8010 -6.2891 44 1 -0.3912 5.4706 -3.9037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157307718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:30 Heat of formation + Delta-G solvation = -93.213326 kcal Electronic energy + Delta-G solvation = -27225.963411 eV Core-core repulsion = 23270.045801 eV Total energy + Delta-G solvation = -3955.917610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73068 -40.01466 -37.92153 -37.46628 -36.93701 -35.80715 -34.46858 -33.76435 -33.04151 -30.71316 -30.35049 -29.24064 -28.10741 -24.83194 -23.80111 -23.39584 -22.06944 -21.43127 -19.93100 -19.75286 -18.68017 -18.15941 -17.53705 -17.41188 -17.20814 -16.97480 -16.69550 -16.46867 -16.15039 -15.79280 -15.24537 -14.97368 -14.90432 -14.37348 -14.24507 -13.94691 -13.87132 -13.85176 -13.70126 -13.63498 -13.47952 -13.02819 -12.99025 -12.95018 -12.81070 -12.77414 -12.47265 -12.31953 -12.05948 -11.86230 -11.63293 -11.38450 -11.26979 -11.22955 -10.93883 -10.86347 -9.86866 -9.72958 -9.04244 -8.38392 -6.43897 -0.98109 0.33646 0.40508 1.27639 1.35738 1.45633 1.69544 1.93798 2.14503 2.26085 2.74872 2.87424 2.97688 3.16442 3.33020 3.52690 3.86789 4.09848 4.16577 4.23235 4.27606 4.32141 4.35095 4.36561 4.44621 4.51896 4.62439 4.67674 4.82528 5.00339 5.01025 5.04787 5.10962 5.19976 5.33276 5.36910 5.39932 5.48048 5.51947 5.57686 5.66034 5.97067 6.06228 6.28212 6.58684 7.11387 7.22696 7.60755 8.76777 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.002346 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.412762 B =11932.362553 C =12487.004223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.269 3.731 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.711 5.711 14 C 0.697 3.303 15 O -0.607 6.607 16 N -0.680 5.680 17 C 0.153 3.847 18 C -0.136 4.136 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.084 4.084 22 C -0.554 4.554 23 S 2.409 3.591 24 C -0.636 4.636 25 O -0.984 6.984 26 O -0.982 6.982 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.404 0.596 35 H 0.420 0.580 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 16.545 -15.790 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.177 4.177 3 C 0.164 3.836 4 H 0.042 0.958 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.363 5.363 14 C 0.398 3.602 15 O -0.486 6.486 16 N -0.329 5.329 17 C 0.058 3.942 18 C -0.157 4.157 19 C -0.126 4.126 20 C -0.148 4.148 21 C -0.086 4.086 22 C -0.682 4.682 23 S 2.597 3.403 24 C -0.788 4.788 25 O -0.982 6.982 26 O -0.979 6.979 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.258 0.742 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.197 0.803 40 H 0.190 0.810 41 H 0.174 0.826 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.108 15.574 -15.196 29.628 hybrid contribution 1.032 -0.050 0.591 1.190 sum -19.076 15.523 -14.605 28.604 Atomic orbital electron populations 1.21732 0.95224 1.00355 1.01532 1.22231 0.95852 0.98563 1.01043 1.18676 0.93043 0.89294 0.82615 0.95816 1.21266 0.90245 1.38591 1.06999 0.92498 1.25526 0.95735 0.95870 0.99821 1.69970 1.10259 1.46126 1.30867 0.86041 0.79347 0.79972 0.78316 1.18542 1.22102 1.18387 1.45144 1.14233 1.58903 1.18021 1.16064 0.82764 0.78549 0.82832 1.90866 1.52501 1.65302 1.39971 1.42514 1.20232 1.56224 1.13966 1.17713 0.84687 0.92635 0.99198 1.21483 0.92204 1.01422 1.00613 1.21308 0.97208 0.95487 0.98564 1.21448 0.99331 0.97067 0.96962 1.18987 0.93513 0.95930 1.00130 1.29316 1.16279 1.03356 1.19202 1.07973 0.74002 0.79709 0.78577 1.30105 1.14283 1.20091 1.14354 1.93550 1.57883 1.70508 1.76220 1.93544 1.40237 1.77473 1.86655 1.21100 0.99403 0.93723 1.02153 0.92486 0.94324 0.92975 0.91363 0.93697 0.92053 0.76070 0.74240 0.86037 0.83700 0.82633 0.80346 0.81014 0.82643 0.84701 0.82371 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.51 71.98 0.61 -4.50 16 2 C -0.14 -5.96 5.11 30.59 0.16 -5.81 16 3 C 0.27 12.63 1.83 44.25 0.08 12.71 16 4 H 0.02 1.26 6.63 -2.39 -0.02 1.24 16 5 C -0.53 -28.87 9.31 25.60 0.24 -28.64 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.71 5.45 84.65 0.46 2.17 16 8 N -0.93 -55.88 13.96 21.45 0.30 -55.58 16 9 Si 0.94 44.74 24.41 68.60 1.67 46.41 16 10 H -0.26 -11.69 6.83 99.48 0.68 -11.01 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 13 N -0.71 -27.62 5.03 -461.42 -2.32 -29.94 16 14 C 0.70 26.10 6.97 179.05 1.25 27.35 16 15 O -0.61 -26.39 10.93 -3.99 -0.04 -26.44 16 16 N -0.68 -19.90 5.34 -317.17 -1.69 -21.59 16 17 C 0.15 4.41 6.29 38.14 0.24 4.65 16 18 C -0.14 -4.13 8.69 22.39 0.19 -3.93 16 19 C -0.11 -2.58 10.04 22.25 0.22 -2.36 16 20 C -0.13 -2.54 9.70 22.29 0.22 -2.33 16 21 C -0.08 -1.56 5.14 -19.88 -0.10 -1.66 16 22 C -0.55 -4.15 5.93 71.24 0.42 -3.72 16 23 S 2.41 27.54 5.34 -56.49 -0.30 27.23 16 24 C -0.64 -0.45 10.62 113.37 1.20 0.75 16 25 O -0.98 -20.63 18.10 -127.37 -2.30 -22.93 16 26 O -0.98 -19.71 18.10 -127.37 -2.31 -22.02 16 27 C -0.14 -3.24 9.62 22.39 0.22 -3.02 16 28 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.60 7.84 -2.39 -0.02 1.58 16 30 H 0.05 2.02 5.65 -2.39 -0.01 2.00 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.04 2.02 3.22 -2.38 -0.01 2.02 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.40 13.70 8.56 -92.71 -0.79 12.90 16 35 H 0.42 9.49 8.84 -92.71 -0.82 8.67 16 36 H 0.12 4.25 6.24 -2.91 -0.02 4.24 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.18 0.01 8.08 -2.39 -0.02 -0.01 16 40 H 0.17 0.26 8.08 -2.39 -0.02 0.24 16 41 H 0.16 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.16 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -85.29 369.21 -2.23 -87.53 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.65 Total: 25.65 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.41 Total: -8.33 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.71 Total: -107.11 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: -4.65 Total: -71.39 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.30 Total: 27.23 kcal Total: -85.29 -2.23 -87.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157307718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.688 kcal (2) G-P(sol) polarization free energy of solvation -85.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds