Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 H 1.08998 * 109.47540 * 54.99357 * 3 2 1 5 5 C 1.50700 * 109.46823 * 174.99569 * 3 2 1 6 6 H 1.08007 * 119.99896 * 120.00213 * 5 3 2 7 7 C 1.37876 * 120.00237 * 299.99622 * 5 3 2 8 8 N 1.31512 * 119.99877 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99715 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.46977 * 90.00495 * 9 7 5 11 11 H 1.48505 * 109.46823 * 209.99648 * 9 7 5 12 12 H 1.48492 * 109.47332 * 329.99815 * 9 7 5 13 13 N 1.46497 * 109.46861 * 294.99498 * 3 2 1 14 14 C 1.34779 * 120.00075 * 85.00374 * 13 3 2 15 15 O 1.21581 * 119.99686 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99769 * 180.02562 * 14 13 3 17 17 C 1.39951 * 119.99706 * 185.31678 * 16 14 13 18 18 C 1.38879 * 120.06856 * 213.28634 * 17 16 14 19 19 C 1.38095 * 119.93170 * 179.72180 * 18 17 16 20 20 C 1.38310 * 120.06543 * 0.50491 * 19 18 17 21 21 S 1.76197 * 119.92605 * 179.76741 * 20 19 18 22 22 C 1.81399 * 104.44867 * 114.72627 * 21 20 19 23 23 O 1.42098 * 104.28140 * 358.65197 * 21 20 19 24 24 O 1.42103 * 104.27399 * 230.79543 * 21 20 19 25 25 C 1.38258 * 120.14003 * 359.49447 * 20 19 18 26 26 C 1.50692 * 119.96372 * 180.27651 * 25 20 19 27 27 C 1.38137 * 120.06784 * 0.24790 * 25 20 19 28 28 H 1.08995 * 109.47490 * 300.00605 * 1 2 3 29 29 H 1.09000 * 109.46850 * 60.00802 * 1 2 3 30 30 H 1.09002 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47699 * 239.99872 * 2 1 3 32 32 H 1.09000 * 109.46850 * 119.99197 * 2 1 3 33 33 H 0.96999 * 120.00331 * 179.97438 * 8 7 5 34 34 H 0.97006 * 120.00127 * 265.00065 * 13 3 2 35 35 H 0.96993 * 120.00413 * 5.30605 * 16 14 13 36 36 H 1.07999 * 120.03786 * 359.97438 * 18 17 16 37 37 H 1.07994 * 119.96905 * 180.25562 * 19 18 17 38 38 H 1.08996 * 109.47367 * 299.99569 * 22 21 20 39 39 H 1.09005 * 109.47102 * 59.99990 * 22 21 20 40 40 H 1.08998 * 109.47249 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47776 * 89.99597 * 26 25 20 42 42 H 1.08999 * 109.47100 * 209.99746 * 26 25 20 43 43 H 1.09002 * 109.47486 * 329.99521 * 26 25 20 44 44 H 1.08008 * 120.03200 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1431 0.8786 1.2281 8 7 5.4538 0.8807 1.3365 9 14 3.0961 0.1092 2.5702 10 1 2.8755 -1.3270 2.2636 11 1 3.7934 0.2351 3.8753 12 1 1.7875 0.8075 2.6386 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3416 2.6318 -0.4323 16 7 0.0784 3.2663 -2.5191 17 6 -1.1393 3.9510 -2.6029 18 6 -1.8452 3.9715 -3.7988 19 6 -3.0493 4.6430 -3.8768 20 6 -3.5473 5.3036 -2.7683 21 16 -5.0811 6.1645 -2.8737 22 6 -6.1856 5.2599 -1.7546 23 8 -5.4883 5.9912 -4.2240 24 8 -4.7943 7.4560 -2.3550 25 6 -2.8470 5.2851 -1.5764 26 6 -3.3964 6.0009 -0.3695 27 6 -1.6446 4.6106 -1.4905 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.8769 0.4830 2.1134 34 1 2.2720 2.1231 -1.9978 35 1 0.6657 3.2253 -3.2899 36 1 -1.4548 3.4593 -4.6658 37 1 -3.6007 4.6559 -4.8052 38 1 -6.2753 4.2265 -2.0894 39 1 -5.7759 5.2805 -0.7446 40 1 -7.1692 5.7295 -1.7569 41 1 -4.0275 5.3195 0.2012 42 1 -2.5723 6.3429 0.2564 43 1 -3.9870 6.8580 -0.6930 44 1 -1.0978 4.5968 -0.5592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158602469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -62.051408 kcal Electronic energy + Delta-G solvation = -27673.012049 eV Core-core repulsion = 23718.445721 eV Total energy + Delta-G solvation = -3954.566328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.64322 -38.98947 -37.41213 -36.20739 -35.96499 -34.71494 -32.81791 -32.48600 -31.65025 -30.07033 -29.51930 -27.50137 -27.21605 -23.74398 -22.70675 -21.97554 -21.08322 -19.99189 -19.25612 -18.58351 -17.72825 -17.29248 -16.64019 -16.38653 -16.23758 -15.74147 -15.20038 -14.90166 -14.52741 -14.38544 -14.24637 -13.72200 -13.61827 -13.45175 -13.40698 -13.28042 -13.07351 -12.88537 -12.59767 -12.33122 -12.26698 -12.06186 -11.91552 -11.83352 -11.49426 -11.24196 -11.18636 -11.02441 -10.80865 -10.71366 -10.49715 -10.00827 -9.83441 -9.51151 -9.32635 -8.91352 -8.85838 -8.48883 -8.15377 -6.29454 -4.32932 -0.14966 0.72589 1.22534 2.65973 2.80962 3.14792 3.17123 3.29477 3.33222 3.54388 3.70972 3.95148 4.23414 4.41748 4.45028 4.59236 4.63866 4.74473 5.04000 5.04845 5.10152 5.24434 5.33153 5.37309 5.49763 5.73420 5.79618 5.87820 5.94008 5.95699 6.07281 6.09532 6.16753 6.41057 6.52480 6.60727 6.70403 6.82006 6.89527 6.98012 7.16169 7.32492 7.39918 8.13930 8.43971 8.67803 8.87732 9.30424 10.82487 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.002535 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.147198 B =11041.685796 C =11313.744749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.051 0.949 5 C -0.538 4.538 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.707 5.707 14 C 0.694 3.306 15 O -0.573 6.573 16 N -0.695 5.695 17 C 0.243 3.757 18 C -0.184 4.184 19 C 0.003 3.997 20 C -0.691 4.691 21 S 2.505 3.495 22 C -0.656 4.656 23 O -0.946 6.946 24 O -0.938 6.938 25 C 0.033 3.967 26 C -0.174 4.174 27 C -0.146 4.146 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.268 0.732 34 H 0.394 0.606 35 H 0.408 0.592 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.002 6.866 -8.744 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.358 5.358 14 C 0.394 3.606 15 O -0.450 6.450 16 N -0.342 5.342 17 C 0.145 3.855 18 C -0.206 4.206 19 C -0.017 4.017 20 C -0.780 4.780 21 S 2.686 3.314 22 C -0.806 4.806 23 O -0.943 6.943 24 O -0.935 6.935 25 C 0.031 3.969 26 C -0.230 4.230 27 C -0.167 4.167 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.244 0.756 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.573 7.426 -8.183 23.353 hybrid contribution 0.738 -1.492 0.443 1.722 sum -19.835 5.935 -7.740 22.103 Atomic orbital electron populations 1.21853 0.96866 0.98998 1.02230 1.22321 0.94421 0.99975 1.01210 1.19111 0.95572 0.88227 0.81505 0.93123 1.21010 0.88436 1.40147 1.08011 0.90163 1.24817 0.94884 0.95073 0.97648 1.69856 1.08703 1.44245 1.29837 0.86900 0.80927 0.79974 0.80922 1.20187 1.22068 1.18434 1.45501 1.13045 1.58357 1.18914 1.16078 0.83562 0.78730 0.82227 1.90914 1.51687 1.64323 1.38100 1.43049 1.20152 1.55577 1.15390 1.17815 0.84884 0.88428 0.94369 1.20947 0.96385 1.05401 0.97856 1.20649 0.93949 0.90312 0.96746 1.29976 1.24189 1.22986 1.00840 1.04859 0.75520 0.75512 0.75468 1.30309 1.16332 1.16028 1.17887 1.93541 1.82455 1.86637 1.31686 1.93538 1.83573 1.35595 1.80823 1.19347 0.93032 0.91855 0.92709 1.21669 1.03963 1.01298 0.96067 1.21263 0.97517 0.98104 0.99844 0.92833 0.93060 0.95013 0.92277 0.92626 0.92157 0.77288 0.75615 0.84895 0.83644 0.84811 0.84779 0.85094 0.89808 0.89324 0.87971 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.51 37.16 0.32 -2.43 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.11 16 3 C 0.26 5.80 1.83 -69.08 -0.13 5.67 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 5 C -0.54 -13.90 9.31 -34.44 -0.32 -14.22 16 6 H 0.08 2.19 7.98 -52.48 -0.42 1.77 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.66 13.96 55.43 0.77 -24.88 16 9 Si 0.88 21.02 24.41 -169.99 -4.15 16.87 16 10 H -0.28 -6.35 6.83 56.52 0.39 -5.97 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.26 -6.09 6.53 56.52 0.37 -5.73 16 13 N -0.71 -12.86 5.03 -59.81 -0.30 -13.16 16 14 C 0.69 11.99 6.87 -86.91 -0.60 11.39 16 15 O -0.57 -11.52 11.16 5.29 0.06 -11.46 16 16 N -0.70 -9.16 5.35 -14.22 -0.08 -9.24 16 17 C 0.24 3.23 6.28 -83.69 -0.53 2.71 16 18 C -0.18 -2.01 9.96 -39.40 -0.39 -2.40 16 19 C 0.00 0.03 9.49 -39.61 -0.38 -0.34 16 20 C -0.69 -7.48 5.58 -39.55 -0.22 -7.71 16 21 S 2.51 22.44 5.20 -107.50 -0.56 21.88 16 22 C -0.66 -3.31 10.59 101.05 1.07 -2.24 16 23 O -0.95 -10.82 16.73 -57.54 -0.96 -11.79 16 24 O -0.94 -10.95 15.35 -57.54 -0.88 -11.83 16 25 C 0.03 0.39 5.86 -104.66 -0.61 -0.23 16 26 C -0.17 -1.66 8.45 36.00 0.30 -1.36 16 27 C -0.15 -2.06 8.31 -39.39 -0.33 -2.39 16 28 H 0.05 1.09 7.84 -51.93 -0.41 0.68 16 29 H 0.05 0.97 5.64 -51.93 -0.29 0.68 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.25 3.21 -51.93 -0.17 1.08 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.39 6.20 8.56 -40.82 -0.35 5.85 16 35 H 0.41 4.00 8.83 -40.82 -0.36 3.64 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.15 1.29 7.20 -52.49 -0.38 0.92 16 38 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.13 0.55 6.00 -51.92 -0.31 0.24 16 40 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.61 7.09 -51.93 -0.37 0.24 16 42 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.10 0.92 4.88 -51.93 -0.25 0.67 16 44 H 0.15 2.36 6.42 -52.48 -0.34 2.02 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -34.92 356.58 -8.47 -43.39 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.71 Total: 9.42 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.04 Total: -14.58 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.40 Total: -47.28 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.79 Total: -35.08 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.15 Total: 16.87 kcal Atomic # 16 Polarization: 22.44 SS G_CDS: -0.56 Total: 21.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.92 -8.47 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158602469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.662 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds