Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46625 * 2 1 4 4 H 1.08998 * 109.47630 * 305.13501 * 3 2 1 5 5 C 1.50701 * 109.46834 * 185.14007 * 3 2 1 6 6 H 1.08010 * 120.00013 * 245.56149 * 5 3 2 7 7 C 1.37879 * 120.00306 * 65.56076 * 5 3 2 8 8 N 1.31514 * 120.00027 * 197.21278 * 7 5 3 9 9 Si 1.86795 * 119.99678 * 17.20768 * 7 5 3 10 10 H 1.48505 * 109.47171 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47687 * 300.00295 * 9 7 5 12 12 H 1.48504 * 109.47010 * 60.00707 * 9 7 5 13 13 N 1.46502 * 109.47397 * 65.13910 * 3 2 1 14 14 C 1.34768 * 120.00098 * 274.99760 * 13 3 2 15 15 O 1.21562 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.47868 * 120.00282 * 180.02562 * 14 13 3 17 17 C 1.39612 * 120.10763 * 359.97438 * 16 14 13 18 18 C 1.37980 * 120.00515 * 179.97438 * 17 16 14 19 19 C 1.38242 * 120.22831 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.89004 * 179.97438 * 19 18 17 21 21 C 1.38983 * 120.22080 * 0.02562 * 19 18 17 22 22 N 1.39702 * 120.00621 * 179.97438 * 21 19 18 23 23 S 1.65600 * 120.00251 * 215.13411 * 22 21 19 24 24 C 1.81398 * 104.45227 * 60.33432 * 23 22 21 25 25 O 1.42094 * 104.28048 * 176.40966 * 23 22 21 26 26 O 1.42102 * 104.27253 * 304.26383 * 23 22 21 27 27 C 1.38682 * 119.98706 * 359.70177 * 21 19 18 28 28 H 1.09005 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47553 * 300.00357 * 1 2 3 30 30 H 1.09000 * 109.46785 * 60.00970 * 1 2 3 31 31 H 1.08998 * 109.47553 * 239.99643 * 2 1 3 32 32 H 1.09006 * 109.46666 * 119.99452 * 2 1 3 33 33 H 0.97004 * 119.99927 * 354.94862 * 8 7 5 34 34 H 0.97002 * 119.99553 * 95.00326 * 13 3 2 35 35 H 1.08004 * 119.99705 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.88332 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.46498 * 90.00286 * 20 19 18 38 38 H 1.09001 * 109.46837 * 210.00106 * 20 19 18 39 39 H 1.08998 * 109.47015 * 330.00396 * 20 19 18 40 40 H 0.97000 * 119.99912 * 35.12977 * 22 21 19 41 41 H 1.08999 * 109.46855 * 59.99996 * 24 23 22 42 42 H 1.08994 * 109.47683 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.47054 * 300.00494 * 24 23 22 44 44 H 1.08003 * 120.10911 * 180.27751 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6034 1.9822 -0.8404 5 6 3.5415 1.4445 -0.1273 6 1 4.1521 1.8065 0.6868 7 6 4.1361 0.9840 -1.2830 8 7 5.4119 0.6650 -1.2840 9 14 3.1293 0.8133 -2.8471 10 1 3.9951 0.3015 -3.9397 11 1 2.0119 -0.1368 -2.6154 12 1 2.5805 2.1391 -3.2297 13 7 1.6552 2.0965 1.2532 14 6 0.4382 2.6632 1.3716 15 8 -0.3401 2.6322 0.4384 16 6 0.0501 3.3239 2.6363 17 6 0.9423 3.3613 3.7094 18 6 0.5782 3.9788 4.8884 19 6 -0.6689 4.5623 5.0120 20 6 -1.0590 5.2342 6.3034 21 6 -1.5646 4.5306 3.9498 22 7 -2.8239 5.1212 4.0798 23 16 -4.1386 4.4402 3.3380 24 6 -4.2579 2.7812 4.0619 25 8 -5.2324 5.2458 3.7546 26 8 -3.7664 4.3613 1.9689 27 6 -1.2059 3.9173 2.7587 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.9518 0.8222 -0.4936 34 1 2.2765 2.1216 1.9977 35 1 1.9178 2.9070 3.6167 36 1 1.2701 4.0070 5.7171 37 1 -0.7716 6.2850 6.2674 38 1 -2.1374 5.1570 6.4418 39 1 -0.5501 4.7465 7.1348 40 1 -2.9283 5.9303 4.6047 41 1 -4.3966 2.8643 5.1398 42 1 -5.1065 2.2545 3.6256 43 1 -3.3418 2.2278 3.8550 44 1 -1.8987 3.8954 1.9305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183806387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -82.597860 kcal Electronic energy + Delta-G solvation = -28013.176525 eV Core-core repulsion = 24057.719236 eV Total energy + Delta-G solvation = -3955.457289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32851 -38.78792 -37.48656 -36.35065 -35.42652 -35.20009 -32.95575 -32.38988 -31.35962 -29.87138 -29.51014 -27.89072 -26.70807 -23.12765 -22.66613 -22.23465 -20.69529 -19.90001 -19.52611 -18.54773 -18.02736 -17.32290 -16.65423 -16.41564 -15.83105 -15.73533 -15.14684 -14.89227 -14.77386 -14.17702 -13.99205 -13.74153 -13.65444 -13.56761 -13.36868 -12.89619 -12.71627 -12.62895 -12.53361 -12.47681 -12.38017 -12.31130 -12.15220 -11.85393 -11.72583 -11.46764 -11.17489 -10.89309 -10.83756 -10.68129 -10.43003 -9.88170 -9.61500 -9.28192 -9.05352 -8.95436 -8.50887 -8.32988 -8.08876 -6.59073 -4.22721 -0.20741 0.79516 1.14785 2.18374 3.03600 3.34763 3.39725 3.46513 3.60280 3.79434 3.85316 3.99591 4.35857 4.41973 4.53498 4.57138 4.60705 4.73365 4.90576 5.10017 5.15839 5.21416 5.23434 5.31166 5.39007 5.55158 5.72859 5.91009 6.01879 6.08613 6.10435 6.22956 6.28465 6.36020 6.44065 6.70155 6.79384 6.81303 6.95621 7.05671 7.36294 7.39706 7.64181 8.22301 8.44416 8.69100 8.94799 9.46098 10.81729 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.003159 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.676540 B = 8861.893318 C = 9875.138227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.246 3.754 4 H 0.044 0.956 5 C -0.618 4.618 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.039 2.961 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.694 5.694 14 C 0.539 3.461 15 O -0.536 6.536 16 C -0.097 4.097 17 C -0.097 4.097 18 C -0.105 4.105 19 C -0.090 4.090 20 C -0.117 4.117 21 C 0.136 3.864 22 N -1.052 6.052 23 S 2.604 3.396 24 C -0.667 4.667 25 O -0.955 6.955 26 O -0.935 6.935 27 C -0.118 4.118 28 H 0.030 0.970 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.392 0.608 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.425 0.575 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 6.184 18.245 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C 0.143 3.857 4 H 0.061 0.939 5 C -0.656 4.656 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.342 5.342 14 C 0.324 3.676 15 O -0.415 6.415 16 C -0.101 4.101 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.095 4.095 20 C -0.174 4.174 21 C 0.040 3.960 22 N -0.802 5.802 23 S 2.697 3.303 24 C -0.818 4.818 25 O -0.945 6.945 26 O -0.925 6.925 27 C -0.140 4.140 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.718 5.905 15.212 23.361 hybrid contribution 0.633 0.424 2.809 2.910 sum -16.085 6.329 18.020 24.970 Atomic orbital electron populations 1.21905 0.97367 0.98898 1.02086 1.22346 0.93816 0.99672 1.01849 1.19093 0.95784 0.88567 0.82234 0.93867 1.22074 0.89604 1.49525 1.04354 0.92054 1.25670 0.97416 0.92220 1.01351 1.70887 1.07741 1.40579 1.33834 0.84122 0.75539 0.77817 0.75855 1.20933 1.19487 1.20530 1.46201 1.14321 1.55465 1.18191 1.18176 0.83011 0.79471 0.86937 1.90775 1.51275 1.59640 1.39851 1.20118 0.94599 1.00308 0.95111 1.21457 0.99388 0.98255 0.92573 1.20846 0.95402 0.98100 0.97977 1.19894 0.94568 1.00231 0.94766 1.20785 1.01999 1.00611 0.93980 1.17105 0.86053 0.99212 0.93634 1.53370 1.19388 1.38118 1.69286 1.05283 0.72602 0.77195 0.75196 1.30443 1.12383 1.24708 1.14272 1.93624 1.51541 1.66023 1.83362 1.93642 1.81164 1.86566 1.31108 1.22116 0.97943 0.97467 0.96452 0.95062 0.93311 0.92841 0.91269 0.93070 0.92125 0.77410 0.84975 0.84994 0.90763 0.91508 0.90859 0.73806 0.85116 0.84775 0.84781 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.52 37.16 0.32 -2.62 16 2 C -0.14 -3.06 5.29 -26.73 -0.14 -3.20 16 3 C 0.25 5.84 1.82 -69.08 -0.13 5.71 16 4 H 0.04 1.12 6.24 -51.93 -0.32 0.80 16 5 C -0.62 -16.47 9.00 -34.44 -0.31 -16.78 16 6 H 0.06 1.70 7.96 -52.48 -0.42 1.28 16 7 C 0.04 1.12 5.31 -17.82 -0.09 1.02 16 8 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 9 Si 1.04 25.06 26.29 -169.99 -4.47 20.59 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.05 5.71 56.52 0.32 -5.73 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.69 -13.86 4.97 -55.87 -0.28 -14.14 16 14 C 0.54 10.47 6.35 -12.32 -0.08 10.39 16 15 O -0.54 -12.14 13.48 5.31 0.07 -12.07 16 16 C -0.10 -1.49 5.87 -104.99 -0.62 -2.10 16 17 C -0.10 -1.16 9.54 -39.16 -0.37 -1.54 16 18 C -0.10 -0.98 9.67 -39.67 -0.38 -1.37 16 19 C -0.09 -0.81 5.90 -104.34 -0.62 -1.42 16 20 C -0.12 -0.66 9.47 36.01 0.34 -0.32 16 21 C 0.14 1.44 6.11 -83.83 -0.51 0.92 16 22 N -1.05 -8.74 5.09 32.39 0.16 -8.58 16 23 S 2.60 24.11 5.87 -107.50 -0.63 23.48 16 24 C -0.67 -4.11 10.72 101.05 1.08 -3.03 16 25 O -0.96 -10.88 18.08 -57.54 -1.04 -11.92 16 26 O -0.94 -12.96 15.03 -57.54 -0.86 -13.82 16 27 C -0.12 -1.68 8.79 -38.97 -0.34 -2.02 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.97 5.64 -51.93 -0.29 0.68 16 30 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 31 H 0.07 1.60 4.82 -51.93 -0.25 1.35 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.81 8.73 -40.82 -0.36 7.46 16 34 H 0.39 6.86 6.55 -40.82 -0.27 6.59 16 35 H 0.13 1.44 6.40 -52.48 -0.34 1.11 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 39 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.42 2.52 7.94 -34.47 -0.27 2.25 16 41 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 44 H 0.18 2.84 4.75 -52.48 -0.25 2.59 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -36.29 363.82 -8.46 -44.75 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.80 Total: 8.26 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.85 Total: -16.33 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.65 Total: -48.42 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.83 Total: -37.81 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -4.47 Total: 20.59 kcal Atomic # 16 Polarization: 24.11 SS G_CDS: -0.63 Total: 23.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.29 -8.46 -44.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183806387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.848 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds