Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46625 * 2 1 4 4 H 1.08998 * 109.47630 * 305.13501 * 3 2 1 5 5 C 1.50701 * 109.46834 * 185.14007 * 3 2 1 6 6 H 1.08010 * 120.00013 * 245.56149 * 5 3 2 7 7 C 1.37879 * 120.00306 * 65.56076 * 5 3 2 8 8 N 1.31514 * 120.00027 * 197.21278 * 7 5 3 9 9 Si 1.86795 * 119.99678 * 17.20768 * 7 5 3 10 10 H 1.48505 * 109.47171 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47687 * 300.00295 * 9 7 5 12 12 H 1.48504 * 109.47010 * 60.00707 * 9 7 5 13 13 N 1.46502 * 109.47397 * 65.13910 * 3 2 1 14 14 C 1.34768 * 120.00098 * 274.99760 * 13 3 2 15 15 O 1.21562 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.47868 * 120.00282 * 180.02562 * 14 13 3 17 17 C 1.39612 * 120.10763 * 359.97438 * 16 14 13 18 18 C 1.37980 * 120.00515 * 179.97438 * 17 16 14 19 19 C 1.38242 * 120.22831 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.89004 * 179.97438 * 19 18 17 21 21 C 1.38983 * 120.22080 * 0.02562 * 19 18 17 22 22 N 1.39702 * 120.00621 * 179.97438 * 21 19 18 23 23 S 1.65600 * 120.00251 * 215.13411 * 22 21 19 24 24 C 1.81398 * 104.45227 * 60.33432 * 23 22 21 25 25 O 1.42094 * 104.28048 * 176.40966 * 23 22 21 26 26 O 1.42102 * 104.27253 * 304.26383 * 23 22 21 27 27 C 1.38682 * 119.98706 * 359.70177 * 21 19 18 28 28 H 1.09005 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47553 * 300.00357 * 1 2 3 30 30 H 1.09000 * 109.46785 * 60.00970 * 1 2 3 31 31 H 1.08998 * 109.47553 * 239.99643 * 2 1 3 32 32 H 1.09006 * 109.46666 * 119.99452 * 2 1 3 33 33 H 0.97004 * 119.99927 * 354.94862 * 8 7 5 34 34 H 0.97002 * 119.99553 * 95.00326 * 13 3 2 35 35 H 1.08004 * 119.99705 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.88332 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.46498 * 90.00286 * 20 19 18 38 38 H 1.09001 * 109.46837 * 210.00106 * 20 19 18 39 39 H 1.08998 * 109.47015 * 330.00396 * 20 19 18 40 40 H 0.97000 * 119.99912 * 35.12977 * 22 21 19 41 41 H 1.08999 * 109.46855 * 59.99996 * 24 23 22 42 42 H 1.08994 * 109.47683 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.47054 * 300.00494 * 24 23 22 44 44 H 1.08003 * 120.10911 * 180.27751 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6034 1.9822 -0.8404 5 6 3.5415 1.4445 -0.1273 6 1 4.1521 1.8065 0.6868 7 6 4.1361 0.9840 -1.2830 8 7 5.4119 0.6650 -1.2840 9 14 3.1293 0.8133 -2.8471 10 1 3.9951 0.3015 -3.9397 11 1 2.0119 -0.1368 -2.6154 12 1 2.5805 2.1391 -3.2297 13 7 1.6552 2.0965 1.2532 14 6 0.4382 2.6632 1.3716 15 8 -0.3401 2.6322 0.4384 16 6 0.0501 3.3239 2.6363 17 6 0.9423 3.3613 3.7094 18 6 0.5782 3.9788 4.8884 19 6 -0.6689 4.5623 5.0120 20 6 -1.0590 5.2342 6.3034 21 6 -1.5646 4.5306 3.9498 22 7 -2.8239 5.1212 4.0798 23 16 -4.1386 4.4402 3.3380 24 6 -4.2579 2.7812 4.0619 25 8 -5.2324 5.2458 3.7546 26 8 -3.7664 4.3613 1.9689 27 6 -1.2059 3.9173 2.7587 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.9518 0.8222 -0.4936 34 1 2.2765 2.1216 1.9977 35 1 1.9178 2.9070 3.6167 36 1 1.2701 4.0070 5.7171 37 1 -0.7716 6.2850 6.2674 38 1 -2.1374 5.1570 6.4418 39 1 -0.5501 4.7465 7.1348 40 1 -2.9283 5.9303 4.6047 41 1 -4.3966 2.8643 5.1398 42 1 -5.1065 2.2545 3.6256 43 1 -3.3418 2.2278 3.8550 44 1 -1.8987 3.8954 1.9305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183806387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -111.182526 kcal Electronic energy + Delta-G solvation = -28014.416049 eV Core-core repulsion = 24057.719236 eV Total energy + Delta-G solvation = -3956.696813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.44298 -40.10269 -38.33577 -37.20963 -37.08732 -36.19457 -34.47769 -33.82346 -32.91146 -30.46152 -30.32729 -29.39181 -27.92645 -24.50061 -23.82448 -23.58953 -22.06327 -21.22890 -20.62861 -20.10960 -18.91794 -18.78902 -17.50213 -17.46255 -17.28602 -16.54042 -16.49376 -16.10991 -15.89167 -15.54764 -15.03106 -14.90105 -14.67129 -14.52323 -14.32802 -14.16422 -14.07118 -14.05094 -13.75930 -13.59185 -13.35261 -13.28904 -13.05994 -12.96821 -12.72582 -12.60211 -12.48629 -12.29299 -12.26834 -11.99263 -11.78296 -11.69241 -11.41751 -11.12658 -10.82092 -10.47003 -9.93876 -9.76361 -9.31913 -8.79726 -6.43909 -0.91319 -0.18684 0.26678 1.44831 1.46616 1.49982 1.69031 1.88574 2.38393 2.41688 2.64890 2.79607 3.00857 3.13205 3.64762 3.77738 3.89516 3.99353 4.02420 4.10230 4.16814 4.32077 4.40304 4.42049 4.51619 4.62099 4.83530 4.85306 4.86902 4.88451 5.02823 5.09581 5.15615 5.22196 5.26004 5.30413 5.37762 5.48416 5.54796 5.63997 5.67389 5.75292 6.01428 6.03731 6.53287 6.82389 7.27451 7.41326 8.60141 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.003159 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.676540 B = 8861.893318 C = 9875.138227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.250 3.750 4 H 0.019 0.981 5 C -0.613 4.613 6 H 0.043 0.957 7 C -0.002 4.002 8 N -0.926 5.926 9 Si 1.067 2.933 10 H -0.281 1.281 11 H -0.245 1.245 12 H -0.278 1.278 13 N -0.694 5.694 14 C 0.538 3.462 15 O -0.577 6.577 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.096 4.096 19 C -0.071 4.071 20 C -0.121 4.121 21 C 0.141 3.859 22 N -1.042 6.042 23 S 2.608 3.392 24 C -0.649 4.649 25 O -0.979 6.979 26 O -0.990 6.990 27 C -0.137 4.137 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.259 0.741 34 H 0.403 0.597 35 H 0.139 0.861 36 H 0.169 0.831 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.437 0.563 41 H 0.164 0.836 42 H 0.151 0.849 43 H 0.133 0.867 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 6.231 21.726 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C 0.145 3.855 4 H 0.037 0.963 5 C -0.650 4.650 6 H 0.062 0.938 7 C -0.203 4.203 8 N -0.561 5.561 9 Si 0.890 3.110 10 H -0.207 1.207 11 H -0.169 1.169 12 H -0.204 1.204 13 N -0.343 5.343 14 C 0.326 3.674 15 O -0.459 6.459 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.075 4.075 20 C -0.177 4.177 21 C 0.045 3.955 22 N -0.793 5.793 23 S 2.705 3.295 24 C -0.803 4.803 25 O -0.970 6.970 26 O -0.980 6.980 27 C -0.159 4.159 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.239 0.761 35 H 0.156 0.844 36 H 0.187 0.813 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.277 0.723 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.152 0.848 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.072 6.006 18.729 26.710 hybrid contribution 1.015 0.487 1.916 2.222 sum -17.056 6.494 20.645 27.555 Atomic orbital electron populations 1.21787 0.95728 1.00416 1.01349 1.22227 0.95190 0.98153 1.01693 1.18801 0.93592 0.89769 0.83313 0.96280 1.22259 0.91256 1.48042 1.03491 0.93845 1.26702 0.97577 0.92053 1.03952 1.70980 1.08639 1.42920 1.33595 0.83753 0.75349 0.78490 0.73369 1.20653 1.16915 1.20417 1.45997 1.15212 1.55792 1.17347 1.18805 0.81955 0.78531 0.88122 1.90741 1.52253 1.61098 1.41765 1.19743 0.96181 1.02859 0.94179 1.21577 0.99013 0.98461 0.92622 1.21253 0.96054 0.96383 0.97694 1.20333 0.93536 0.98226 0.95391 1.20958 1.03414 1.01062 0.92251 1.17028 0.86972 0.98651 0.92875 1.53114 1.18336 1.38829 1.69065 1.04902 0.72017 0.78337 0.74206 1.30290 1.13191 1.20759 1.16080 1.93588 1.52272 1.67723 1.83406 1.93589 1.81810 1.87698 1.34923 1.21956 0.97390 0.99156 0.97417 0.92253 0.93376 0.94367 0.92242 0.92332 0.93134 0.76095 0.84352 0.81310 0.89431 0.89945 0.88799 0.72313 0.81822 0.83047 0.84843 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.52 71.98 0.61 -4.79 16 2 C -0.13 -5.89 5.29 30.59 0.16 -5.73 16 3 C 0.25 12.04 1.82 44.24 0.08 12.12 16 4 H 0.02 1.03 6.24 -2.39 -0.01 1.01 16 5 C -0.61 -33.35 9.00 25.60 0.23 -33.12 16 6 H 0.04 2.47 7.96 -2.91 -0.02 2.44 16 7 C 0.00 -0.09 5.31 84.66 0.45 0.36 16 8 N -0.93 -55.78 13.70 21.45 0.29 -55.49 16 9 Si 1.07 51.10 26.29 68.60 1.80 52.91 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.24 -10.69 5.71 99.48 0.57 -10.12 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.69 -28.24 4.97 -448.96 -2.23 -30.48 16 14 C 0.54 21.48 6.35 86.79 0.55 22.03 16 15 O -0.58 -27.26 13.48 -3.91 -0.05 -27.31 16 16 C -0.13 -3.84 5.87 -20.10 -0.12 -3.96 16 17 C -0.10 -2.16 9.54 22.54 0.21 -1.94 16 18 C -0.10 -1.43 9.67 22.21 0.21 -1.21 16 19 C -0.07 -0.98 5.90 -19.68 -0.12 -1.10 16 20 C -0.12 -0.71 9.47 71.24 0.67 -0.04 16 21 C 0.14 2.71 6.11 38.17 0.23 2.95 16 22 N -1.04 -15.43 5.09 -51.45 -0.26 -15.69 16 23 S 2.61 46.55 5.87 -56.49 -0.33 46.22 16 24 C -0.65 -6.26 10.72 113.37 1.22 -5.05 16 25 O -0.98 -21.49 18.08 -127.65 -2.31 -23.80 16 26 O -0.99 -28.84 15.03 -127.65 -1.92 -30.76 16 27 C -0.14 -3.91 8.79 22.67 0.20 -3.71 16 28 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 30 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 31 H 0.06 2.71 4.82 -2.39 -0.01 2.70 16 32 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.26 15.55 8.73 -92.71 -0.81 14.74 16 34 H 0.40 14.24 6.55 -92.71 -0.61 13.63 16 35 H 0.14 2.81 6.40 -2.91 -0.02 2.79 16 36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 0.28 7.16 -2.39 -0.02 0.27 16 39 H 0.09 0.27 8.08 -2.39 -0.02 0.25 16 40 H 0.44 4.08 7.94 -96.75 -0.77 3.32 16 41 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.15 5.11 4.75 -2.91 -0.01 5.09 16 Total: -1.00 -82.97 363.82 -0.90 -83.87 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.49 Total: 23.72 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.60 Total: -23.19 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -2.20 Total: -101.65 kcal Atomic # 8 Polarization: -77.59 SS G_CDS: -4.28 Total: -81.87 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.80 Total: 52.91 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -0.33 Total: 46.22 kcal Total: -82.97 -0.90 -83.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183806387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.311 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds