Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 N 1.46496 * 109.47167 * 180.02562 * 17 16 14 19 19 S 1.65597 * 120.00212 * 164.99965 * 18 17 16 20 20 O 1.42104 * 106.40423 * 178.54091 * 19 18 17 21 21 O 1.42107 * 106.40239 * 311.45389 * 19 18 17 22 22 C 1.76200 * 107.22011 * 64.99609 * 19 18 17 23 23 C 1.38235 * 119.99772 * 269.72688 * 22 19 18 24 24 C 1.38240 * 119.99455 * 179.76245 * 23 22 19 25 25 C 1.38230 * 119.99887 * 0.51374 * 24 23 22 26 26 C 1.38236 * 120.00471 * 359.74096 * 25 24 23 27 27 C 1.38230 * 119.99766 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 30 30 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 35 35 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 36 36 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 37 37 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 38 38 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 39 39 H 0.97001 * 119.99832 * 344.99543 * 18 17 16 40 40 H 1.07996 * 119.99850 * 359.97438 * 23 22 19 41 41 H 1.07999 * 119.99716 * 180.22507 * 24 23 22 42 42 H 1.08008 * 119.99767 * 179.72003 * 25 24 23 43 43 H 1.08000 * 120.00058 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.99924 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 7 -1.7649 4.5610 3.7685 19 16 -3.0757 5.5724 3.8022 20 8 -3.2069 6.0146 5.1463 21 8 -2.9255 6.4606 2.7031 22 6 -4.4995 4.5927 3.4594 23 6 -4.9265 4.4267 2.1552 24 6 -6.0408 3.6541 1.8859 25 6 -6.7340 3.0562 2.9216 26 6 -6.3100 3.2266 4.2263 27 6 -5.1931 3.9952 4.4952 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 2.2720 2.1230 1.9979 35 1 0.0655 2.6181 3.4660 36 1 0.7332 4.1557 2.8675 37 1 -1.4048 4.6303 1.7038 38 1 -2.0718 3.0925 2.3026 39 1 -1.2535 4.4027 4.5774 40 1 -4.3877 4.8978 1.3465 41 1 -6.3723 3.5214 0.8666 42 1 -7.6072 2.4562 2.7115 43 1 -6.8520 2.7598 5.0355 44 1 -4.8621 4.1286 5.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183920487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = -95.679147 kcal Electronic energy + Delta-G solvation = -27119.806523 eV Core-core repulsion = 23163.781988 eV Total energy + Delta-G solvation = -3956.024536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.38687 -39.20069 -37.42352 -36.04448 -35.95174 -34.91464 -32.43378 -31.62022 -31.35227 -31.22755 -29.86683 -26.97789 -23.91131 -23.53076 -23.06640 -22.72598 -20.36563 -19.74808 -19.33659 -18.45156 -17.70191 -16.98336 -16.50154 -16.34653 -15.76404 -15.54388 -15.25347 -15.12660 -14.87182 -14.45444 -14.27922 -13.89932 -13.85190 -13.33181 -13.20046 -12.72549 -12.57845 -12.39256 -12.29318 -12.23994 -12.16000 -11.70907 -11.66206 -11.59465 -11.32751 -11.27121 -11.01714 -10.99277 -10.84153 -10.34892 -10.20573 -9.77326 -9.68883 -9.66509 -9.36795 -9.10112 -9.03423 -8.53091 -7.86815 -6.15179 -4.24694 0.15510 0.53115 0.96978 2.74704 3.20652 3.22124 3.29502 3.31107 3.33959 3.57918 4.02140 4.15300 4.36216 4.53091 4.55797 4.64391 4.70941 4.97799 5.08627 5.11073 5.16421 5.33326 5.34807 5.41101 5.58648 5.67824 5.74851 5.86375 5.88707 6.01454 6.02793 6.34837 6.40940 6.49427 6.61418 6.73820 6.99353 7.15548 7.32609 7.41143 7.58436 7.69450 7.86939 8.15077 8.62034 8.74218 9.08306 9.42845 10.90092 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.002425 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.660755 B =11541.762432 C =12417.509284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.503 3.497 15 O -0.549 6.549 16 C -0.151 4.151 17 C 0.131 3.869 18 N -1.117 6.117 19 S 2.699 3.301 20 O -0.962 6.962 21 O -0.953 6.953 22 C -0.677 4.677 23 C -0.017 4.017 24 C -0.139 4.139 25 C -0.065 4.065 26 C -0.144 4.144 27 C -0.021 4.021 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.389 0.611 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.418 0.582 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.407 4.690 13.829 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.287 3.713 15 O -0.429 6.429 16 C -0.193 4.193 17 C 0.006 3.994 18 N -0.878 5.878 19 S 2.788 3.212 20 O -0.953 6.953 21 O -0.943 6.943 22 C -0.764 4.764 23 C -0.036 4.036 24 C -0.158 4.158 25 C -0.083 4.083 26 C -0.163 4.163 27 C -0.040 4.040 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.253 0.747 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.021 5.482 12.925 22.064 hybrid contribution 1.121 -0.945 0.454 1.535 sum -15.899 4.537 13.379 21.269 Atomic orbital electron populations 1.21834 0.98387 0.97999 1.01187 1.21935 0.92581 0.99854 1.02280 1.18795 0.94202 0.89165 0.81055 0.93217 1.21231 0.90742 1.39058 1.06287 0.92102 1.24887 0.98605 0.94816 0.95379 1.69891 1.35136 1.37545 1.09370 0.86459 0.84878 0.78422 0.77403 1.20576 1.21073 1.19869 1.46500 1.14709 1.55647 1.18615 1.20121 0.82992 0.79481 0.88744 1.90687 1.51464 1.60171 1.40541 1.21828 0.97210 1.01821 0.98396 1.21069 0.96177 0.97883 0.84318 1.55498 1.46288 1.67510 1.18509 1.01723 0.72827 0.73226 0.73424 1.93586 1.86328 1.79330 1.36022 1.93610 1.85456 1.60363 1.54849 1.30967 1.23342 1.21247 1.00829 1.21060 0.94789 0.93009 0.94778 1.21364 0.96206 0.98267 0.99958 1.21528 0.98090 0.95721 0.92960 1.21302 0.97641 1.00132 0.97203 1.20928 0.93315 0.91588 0.98186 0.95921 0.94335 0.93110 0.88302 0.95082 0.92550 0.77902 0.88805 0.88478 0.89132 0.90781 0.74748 0.83893 0.84810 0.85224 0.85076 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.40 7.57 -51.93 -0.39 1.01 16 5 C -0.53 -13.68 8.73 -34.44 -0.30 -13.98 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.22 11.29 55.43 0.63 -23.59 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.71 -13.49 5.02 -54.93 -0.28 -13.76 16 14 C 0.50 8.85 6.40 -10.98 -0.07 8.78 16 15 O -0.55 -11.59 13.15 5.56 0.07 -11.52 16 16 C -0.15 -1.78 5.84 -27.88 -0.16 -1.94 16 17 C 0.13 1.53 5.51 -4.05 -0.02 1.50 16 18 N -1.12 -10.39 6.00 -10.62 -0.06 -10.46 16 19 S 2.70 29.75 5.74 -107.50 -0.62 29.14 16 20 O -0.96 -12.23 17.28 -57.17 -0.99 -13.22 16 21 O -0.95 -13.52 16.75 -57.17 -0.96 -14.47 16 22 C -0.68 -7.01 5.95 -39.58 -0.24 -7.24 16 23 C -0.02 -0.18 9.52 -39.58 -0.38 -0.55 16 24 C -0.14 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.06 -0.50 10.05 -39.59 -0.40 -0.90 16 26 C -0.14 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.02 -0.19 9.52 -39.58 -0.38 -0.57 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.77 5.67 -51.93 -0.29 0.48 16 30 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.39 6.34 8.54 -40.82 -0.35 5.99 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.18 7.71 -51.93 -0.40 0.78 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 39 H 0.42 2.85 8.65 -34.47 -0.30 2.56 16 40 H 0.14 1.42 7.61 -52.49 -0.40 1.02 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 1.05 7.62 -52.49 -0.40 0.65 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -33.88 377.26 -10.53 -44.40 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.17 Total: 8.39 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.82 Total: -15.79 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.29 Total: -47.81 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -1.87 Total: -39.21 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 29.75 SS G_CDS: -0.62 Total: 29.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.88 -10.53 -44.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183920487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.276 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds