Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 N 1.46496 * 109.47167 * 180.02562 * 17 16 14 19 19 S 1.65597 * 120.00212 * 164.99965 * 18 17 16 20 20 O 1.42104 * 106.40423 * 178.54091 * 19 18 17 21 21 O 1.42107 * 106.40239 * 311.45389 * 19 18 17 22 22 C 1.76200 * 107.22011 * 64.99609 * 19 18 17 23 23 C 1.38235 * 119.99772 * 269.72688 * 22 19 18 24 24 C 1.38240 * 119.99455 * 179.76245 * 23 22 19 25 25 C 1.38230 * 119.99887 * 0.51374 * 24 23 22 26 26 C 1.38236 * 120.00471 * 359.74096 * 25 24 23 27 27 C 1.38230 * 119.99766 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 30 30 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 35 35 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 36 36 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 37 37 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 38 38 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 39 39 H 0.97001 * 119.99832 * 344.99543 * 18 17 16 40 40 H 1.07996 * 119.99850 * 359.97438 * 23 22 19 41 41 H 1.07999 * 119.99716 * 180.22507 * 24 23 22 42 42 H 1.08008 * 119.99767 * 179.72003 * 25 24 23 43 43 H 1.08000 * 120.00058 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.99924 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 7 -1.7649 4.5610 3.7685 19 16 -3.0757 5.5724 3.8022 20 8 -3.2069 6.0146 5.1463 21 8 -2.9255 6.4606 2.7031 22 6 -4.4995 4.5927 3.4594 23 6 -4.9265 4.4267 2.1552 24 6 -6.0408 3.6541 1.8859 25 6 -6.7340 3.0562 2.9216 26 6 -6.3100 3.2266 4.2263 27 6 -5.1931 3.9952 4.4952 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 2.2720 2.1230 1.9979 35 1 0.0655 2.6181 3.4660 36 1 0.7332 4.1557 2.8675 37 1 -1.4048 4.6303 1.7038 38 1 -2.0718 3.0925 2.3026 39 1 -1.2535 4.4027 4.5774 40 1 -4.3877 4.8978 1.3465 41 1 -6.3723 3.5214 0.8666 42 1 -7.6072 2.4562 2.7115 43 1 -6.8520 2.7598 5.0355 44 1 -4.8621 4.1286 5.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183920487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -120.966624 kcal Electronic energy + Delta-G solvation = -27120.903071 eV Core-core repulsion = 23163.781988 eV Total energy + Delta-G solvation = -3957.121083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69204 -40.02939 -38.40084 -37.25160 -37.01418 -36.37018 -34.25699 -32.91223 -32.28149 -32.00030 -31.05624 -28.81463 -25.36895 -24.32328 -24.19932 -23.68958 -21.90413 -21.06897 -20.61132 -19.30075 -18.83331 -18.34302 -17.70085 -17.07698 -17.07329 -16.91287 -16.70016 -16.03621 -15.98708 -15.56799 -15.36264 -15.23335 -14.70163 -14.54723 -14.48973 -14.04812 -13.76735 -13.49608 -13.34191 -13.29038 -13.26642 -13.17829 -13.12549 -12.92243 -12.67206 -12.65871 -12.47027 -12.22129 -12.14757 -11.99233 -11.77271 -11.54773 -11.01357 -10.64307 -10.55972 -10.46331 -10.38802 -10.03500 -9.55708 -8.14033 -6.30751 -0.68895 -0.18544 0.30832 1.45434 1.46590 1.56322 1.89401 1.93740 2.39246 2.48847 2.72749 2.82258 3.15692 3.28524 3.72573 3.84455 3.94589 4.10462 4.15784 4.18756 4.38495 4.39442 4.51384 4.53904 4.61937 4.63884 4.71393 4.82011 4.92426 4.95557 5.07274 5.10797 5.11428 5.27505 5.31117 5.38893 5.48340 5.60384 5.68255 5.84708 5.87213 5.97717 6.08660 6.21660 6.78737 7.06231 7.37116 7.66920 8.91009 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.002425 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.660755 B =11541.762432 C =12417.509284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.706 5.706 14 C 0.497 3.503 15 O -0.589 6.589 16 C -0.137 4.137 17 C 0.135 3.865 18 N -1.103 6.103 19 S 2.716 3.284 20 O -0.979 6.979 21 O -0.991 6.991 22 C -0.686 4.686 23 C -0.042 4.042 24 C -0.150 4.150 25 C -0.064 4.064 26 C -0.144 4.144 27 C -0.033 4.033 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.432 0.568 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.670 3.978 16.402 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.355 5.355 14 C 0.284 3.716 15 O -0.470 6.470 16 C -0.178 4.178 17 C 0.008 3.992 18 N -0.866 5.866 19 S 2.807 3.193 20 O -0.969 6.969 21 O -0.981 6.981 22 C -0.775 4.775 23 C -0.061 4.061 24 C -0.168 4.168 25 C -0.082 4.082 26 C -0.163 4.163 27 C -0.052 4.052 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.270 0.730 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.254 4.801 15.565 23.728 hybrid contribution 1.097 -0.734 -0.352 1.366 sum -16.157 4.067 15.213 22.562 Atomic orbital electron populations 1.21674 0.96831 0.99066 1.00452 1.21776 0.93889 0.99184 1.01178 1.18335 0.93398 0.89218 0.81726 0.98419 1.21611 0.91698 1.38620 1.06527 0.91026 1.25746 1.03054 0.94567 0.95159 1.70049 1.36928 1.38488 1.09907 0.85420 0.79504 0.78817 0.77036 1.19739 1.21503 1.18961 1.46255 1.15897 1.55875 1.17490 1.21079 0.81777 0.78538 0.90255 1.90680 1.52430 1.61314 1.42593 1.21787 0.97362 1.02904 0.95743 1.20911 0.96318 0.97424 0.84557 1.55147 1.46163 1.66850 1.18399 1.00938 0.73043 0.73036 0.72251 1.93556 1.86720 1.80012 1.36643 1.93562 1.86146 1.62307 1.56037 1.30733 1.23320 1.22085 1.01337 1.21169 0.95949 0.94241 0.94780 1.21656 0.95832 0.97987 1.01370 1.21941 0.98537 0.95107 0.92583 1.21715 0.97059 0.99284 0.98232 1.21234 0.93825 0.91699 0.98466 0.93827 0.93192 0.95660 0.91366 0.94019 0.92719 0.75991 0.85045 0.86059 0.91169 0.90870 0.73014 0.84761 0.83346 0.82231 0.82125 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.52 71.98 0.61 -4.63 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.58 2.24 44.24 0.10 13.68 16 4 H 0.00 -0.12 7.57 -2.39 -0.02 -0.14 16 5 C -0.55 -28.00 8.73 25.60 0.22 -27.78 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -51.64 11.29 21.45 0.24 -51.40 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.71 -26.39 5.02 -446.09 -2.24 -28.63 16 14 C 0.50 17.11 6.40 87.66 0.56 17.67 16 15 O -0.59 -25.33 13.15 -3.03 -0.04 -25.37 16 16 C -0.14 -2.88 5.84 29.85 0.17 -2.71 16 17 C 0.13 2.99 5.51 86.38 0.48 3.46 16 18 N -1.10 -18.91 6.00 -187.51 -1.12 -20.03 16 19 S 2.72 59.24 5.74 -56.49 -0.32 58.91 16 20 O -0.98 -24.14 17.28 -128.00 -2.21 -26.35 16 21 O -0.99 -28.98 16.75 -128.00 -2.14 -31.12 16 22 C -0.69 -13.88 5.95 22.27 0.13 -13.75 16 23 C -0.04 -0.88 9.52 22.27 0.21 -0.66 16 24 C -0.15 -2.50 10.05 22.27 0.22 -2.27 16 25 C -0.06 -0.83 10.05 22.27 0.22 -0.60 16 26 C -0.14 -1.88 10.05 22.27 0.22 -1.66 16 27 C -0.03 -0.55 9.52 22.27 0.21 -0.33 16 28 H 0.04 1.63 8.14 -2.38 -0.02 1.62 16 29 H 0.05 1.98 5.67 -2.39 -0.01 1.97 16 30 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 31 H 0.07 3.67 5.95 -2.38 -0.01 3.66 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.41 12.41 8.54 -92.70 -0.79 11.62 16 35 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.87 7.71 -2.39 -0.02 1.85 16 38 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.43 4.79 8.65 -96.75 -0.84 3.96 16 40 H 0.13 2.89 7.61 -2.91 -0.02 2.86 16 41 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.15 2.00 7.62 -2.91 -0.02 1.98 16 Total: -1.00 -75.94 377.26 -2.42 -78.36 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.60 Total: 26.13 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.99 Total: -23.92 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -3.12 Total: -100.06 kcal Atomic # 8 Polarization: -78.45 SS G_CDS: -4.40 Total: -82.85 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 59.24 SS G_CDS: -0.32 Total: 58.91 kcal Total: -75.94 -2.42 -78.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183920487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.608 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds