Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47350 * 179.97438 * 16 14 13 18 18 C 1.33443 * 122.72020 * 124.73349 * 17 16 14 19 19 S 1.76174 * 108.06304 * 179.97438 * 18 17 16 20 20 C 1.70965 * 90.34151 * 0.27375 * 19 18 17 21 21 N 1.38995 * 124.94386 * 179.87963 * 20 19 18 22 22 C 1.34777 * 119.99989 * 359.95329 * 21 20 19 23 23 O 1.21283 * 120.00213 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.99681 * 180.02562 * 22 21 20 25 25 C 1.52992 * 109.47476 * 60.00398 * 24 22 21 26 26 C 1.53008 * 109.46913 * 180.02562 * 24 22 21 27 27 N 1.29625 * 110.10994 * 359.83915 * 20 19 18 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 35 35 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 36 36 H 1.08002 * 125.96236 * 0.03079 * 18 17 16 37 37 H 0.97004 * 119.99730 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47473 * 300.00029 * 24 22 21 39 39 H 1.09001 * 109.47014 * 299.99767 * 25 24 22 40 40 H 1.08999 * 109.47071 * 59.99385 * 25 24 22 41 41 H 1.09000 * 109.47696 * 179.97438 * 25 24 22 42 42 H 1.08996 * 109.47060 * 60.00016 * 26 24 22 43 43 H 1.08996 * 109.46753 * 179.97438 * 26 24 22 44 44 H 1.08999 * 109.46840 * 300.00129 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 -1.3412 4.0486 -2.2634 18 6 -1.5816 5.3451 -2.4684 19 16 -3.2673 5.6587 -2.0635 20 6 -3.4844 4.0143 -1.6492 21 7 -4.6741 3.4584 -1.1938 22 6 -5.7680 4.2325 -1.0499 23 8 -5.7144 5.4140 -1.3183 24 6 -7.0578 3.6298 -0.5556 25 6 -6.8415 3.0334 0.8366 26 6 -8.1336 4.7155 -0.4844 27 7 -2.3781 3.3613 -1.8223 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0608 2.9500 34 1 0.7239 4.1957 -2.7823 35 1 -0.0720 2.6967 -3.3193 36 1 -0.8677 6.0745 -2.8217 37 1 -4.7170 2.5134 -0.9792 38 1 -7.3786 2.8454 -1.2411 39 1 -6.0752 2.2599 0.7854 40 1 -6.5208 3.8178 1.5220 41 1 -7.7745 2.5979 1.1943 42 1 -8.2877 5.1400 -1.4764 43 1 -9.0666 4.2795 -0.1273 44 1 -7.8131 5.5002 0.2009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187961777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -87.512065 kcal Electronic energy + Delta-G solvation = -27146.328218 eV Core-core repulsion = 23190.657834 eV Total energy + Delta-G solvation = -3955.670385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90013 -39.99335 -38.98472 -35.78729 -35.20145 -35.03617 -33.44222 -31.63659 -31.12282 -28.33076 -27.58721 -27.06092 -25.50936 -23.47587 -22.95640 -21.36024 -21.07022 -19.66045 -19.20565 -18.23056 -17.38236 -17.09670 -16.61625 -16.45942 -16.15696 -15.44928 -15.13032 -15.02163 -14.71440 -14.47111 -13.97128 -13.82633 -13.28330 -13.14021 -12.96480 -12.81396 -12.76141 -12.52053 -12.41691 -11.75664 -11.65917 -11.63129 -11.45475 -11.36533 -11.22987 -11.10180 -10.97503 -10.88498 -10.59844 -10.25863 -10.16850 -9.72554 -9.64663 -9.45983 -9.27551 -9.11874 -8.74553 -8.41138 -8.28767 -6.15062 -4.21951 0.73245 1.15039 1.84825 1.98385 2.38040 2.92617 3.17184 3.27910 3.31365 3.34077 3.89863 4.02703 4.35379 4.37834 4.42538 4.44739 4.83388 5.12889 5.15981 5.16650 5.25700 5.35544 5.37423 5.46127 5.53282 5.65475 5.69948 5.74763 5.80813 5.88467 6.19521 6.30747 6.38778 6.54814 6.64152 6.95205 7.04930 7.24682 7.34573 7.45989 7.66233 7.79775 7.84813 8.03190 8.21864 8.72425 8.97620 9.43195 10.91616 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.002505 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.084630 B =11173.401860 C =12101.345394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.045 0.955 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.359 6.359 14 C 0.454 3.546 15 O -0.500 6.500 16 C -0.044 4.044 17 C 0.112 3.888 18 C -0.308 4.308 19 S 0.226 5.774 20 C 0.239 3.761 21 N -0.621 5.621 22 C 0.515 3.485 23 O -0.505 6.505 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.135 4.135 27 N -0.478 5.478 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.178 0.822 37 H 0.424 0.576 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 7.091 -8.274 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.276 6.276 14 C 0.295 3.705 15 O -0.388 6.388 16 C -0.084 4.084 17 C -0.020 4.020 18 C -0.448 4.448 19 S 0.476 5.524 20 C -0.128 4.128 21 N -0.271 5.271 22 C 0.301 3.699 23 O -0.379 6.379 24 C -0.126 4.126 25 C -0.209 4.209 26 C -0.192 4.192 27 N -0.200 5.200 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.195 0.805 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.694 8.110 -7.799 24.438 hybrid contribution 1.833 -1.185 0.273 2.200 sum -19.861 6.925 -7.526 22.339 Atomic orbital electron populations 1.21832 0.98214 0.98724 1.00971 1.22001 0.92731 0.99380 1.03155 1.20615 0.94800 0.88741 0.78758 0.93682 1.21024 0.89808 1.38885 1.06160 0.91414 1.24889 0.99165 0.94836 0.95102 1.69893 1.35402 1.37877 1.09469 0.86350 0.83997 0.78452 0.77427 1.20024 1.21084 1.19946 1.86454 1.34292 1.62760 1.44087 1.22837 0.80906 0.77459 0.89302 1.90626 1.54948 1.57702 1.35525 1.19864 0.91086 1.00927 0.96532 1.19130 0.93758 0.89812 0.99323 1.27186 1.02834 1.00192 1.14617 1.84661 1.02319 1.05434 1.59940 1.23349 0.90183 0.95923 1.03368 1.42879 1.06559 1.14302 1.63340 1.21239 0.84983 0.86641 0.76990 1.90650 1.83208 1.15550 1.48471 1.21286 0.91581 1.00280 0.99440 1.21874 1.03268 1.01415 0.94299 1.21662 0.96614 0.97534 1.03419 1.66023 0.97470 1.38175 1.18325 0.95135 0.93068 0.94511 0.94097 0.87540 0.92408 0.86555 0.86775 0.80488 0.73713 0.87595 0.91670 0.91563 0.90624 0.91656 0.91426 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.57 37.16 0.32 -2.86 16 2 C -0.13 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 6.03 2.25 -27.88 -0.06 5.97 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.72 8.90 -34.44 -0.31 -15.02 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.39 11.30 55.43 0.63 -24.77 16 9 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.36 -8.60 9.81 -39.26 -0.39 -8.99 16 14 C 0.45 9.62 6.38 36.00 0.23 9.85 16 15 O -0.50 -11.94 12.58 -18.75 -0.24 -12.18 16 16 C -0.04 -0.67 6.30 -29.04 -0.18 -0.86 16 17 C 0.11 1.76 5.63 -84.20 -0.47 1.29 16 18 C -0.31 -4.05 11.05 29.06 0.32 -3.73 16 19 S 0.23 2.96 20.22 -107.50 -2.17 0.78 16 20 C 0.24 3.45 8.19 -87.35 -0.72 2.73 16 21 N -0.62 -6.90 5.30 -13.07 -0.07 -6.97 16 22 C 0.51 5.16 7.12 -10.98 -0.08 5.08 16 23 O -0.50 -6.39 13.45 5.56 0.07 -6.31 16 24 C -0.10 -0.65 3.26 -91.77 -0.30 -0.95 16 25 C -0.15 -0.84 9.09 37.15 0.34 -0.50 16 26 C -0.13 -0.81 8.48 37.16 0.32 -0.49 16 27 N -0.48 -7.99 9.73 -11.28 -0.11 -8.10 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 30 H 0.04 0.81 6.06 -51.93 -0.31 0.50 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.12 1.43 8.03 -51.93 -0.42 1.02 16 35 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 37 H 0.42 3.85 8.24 -40.82 -0.34 3.52 16 38 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -34.45 377.40 -8.76 -43.21 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.31 Total: 2.87 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.84 Total: -1.43 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.45 Total: -39.83 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.55 Total: -27.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.17 Total: 0.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.45 -8.76 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187961777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.300 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds