Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47350 * 179.97438 * 16 14 13 18 18 C 1.33443 * 122.72020 * 124.73349 * 17 16 14 19 19 S 1.76174 * 108.06304 * 179.97438 * 18 17 16 20 20 C 1.70965 * 90.34151 * 0.27375 * 19 18 17 21 21 N 1.38995 * 124.94386 * 179.87963 * 20 19 18 22 22 C 1.34777 * 119.99989 * 359.95329 * 21 20 19 23 23 O 1.21283 * 120.00213 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.99681 * 180.02562 * 22 21 20 25 25 C 1.52992 * 109.47476 * 60.00398 * 24 22 21 26 26 C 1.53008 * 109.46913 * 180.02562 * 24 22 21 27 27 N 1.29625 * 110.10994 * 359.83915 * 20 19 18 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 35 35 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 36 36 H 1.08002 * 125.96236 * 0.03079 * 18 17 16 37 37 H 0.97004 * 119.99730 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47473 * 300.00029 * 24 22 21 39 39 H 1.09001 * 109.47014 * 299.99767 * 25 24 22 40 40 H 1.08999 * 109.47071 * 59.99385 * 25 24 22 41 41 H 1.09000 * 109.47696 * 179.97438 * 25 24 22 42 42 H 1.08996 * 109.47060 * 60.00016 * 26 24 22 43 43 H 1.08996 * 109.46753 * 179.97438 * 26 24 22 44 44 H 1.08999 * 109.46840 * 300.00129 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 -1.3412 4.0486 -2.2634 18 6 -1.5816 5.3451 -2.4684 19 16 -3.2673 5.6587 -2.0635 20 6 -3.4844 4.0143 -1.6492 21 7 -4.6741 3.4584 -1.1938 22 6 -5.7680 4.2325 -1.0499 23 8 -5.7144 5.4140 -1.3183 24 6 -7.0578 3.6298 -0.5556 25 6 -6.8415 3.0334 0.8366 26 6 -8.1336 4.7155 -0.4844 27 7 -2.3781 3.3613 -1.8223 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0608 2.9500 34 1 0.7239 4.1957 -2.7823 35 1 -0.0720 2.6967 -3.3193 36 1 -0.8677 6.0745 -2.8217 37 1 -4.7170 2.5134 -0.9792 38 1 -7.3786 2.8454 -1.2411 39 1 -6.0752 2.2599 0.7854 40 1 -6.5208 3.8178 1.5220 41 1 -7.7745 2.5979 1.1943 42 1 -8.2877 5.1400 -1.4764 43 1 -9.0666 4.2795 -0.1273 44 1 -7.8131 5.5002 0.2009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187961777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -108.693982 kcal Electronic energy + Delta-G solvation = -27147.246735 eV Core-core repulsion = 23190.657834 eV Total energy + Delta-G solvation = -3956.588901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82754 -41.39360 -40.36633 -37.54908 -36.22357 -35.63503 -35.46474 -33.42511 -32.55987 -29.70515 -28.91327 -28.06537 -26.39890 -25.28536 -24.11439 -22.80795 -22.14040 -21.38521 -20.33178 -19.30897 -18.79713 -18.45823 -18.16096 -17.77042 -17.27994 -16.95459 -16.77406 -16.29775 -15.86597 -15.55320 -15.17442 -14.88637 -14.71843 -14.54869 -14.18682 -14.02982 -13.78989 -13.42757 -13.34732 -13.27648 -13.19429 -13.04069 -12.94912 -12.75889 -12.54591 -12.42364 -12.14294 -12.13661 -12.07653 -11.95041 -11.74038 -11.40910 -11.16618 -11.01615 -10.79152 -10.72842 -10.50515 -10.18945 -9.31856 -8.26136 -6.43011 -0.29648 0.13617 0.81052 1.11011 1.41725 1.45600 1.50138 1.53096 1.53912 1.79704 2.25949 2.51672 3.03283 3.25917 3.46459 3.89640 3.94563 4.03656 4.14881 4.32473 4.38147 4.38391 4.42084 4.51943 4.59887 4.63733 4.72258 4.73807 4.81366 4.86589 4.92017 5.02899 5.08123 5.12769 5.24595 5.25835 5.34076 5.41689 5.53550 5.69243 5.82207 6.01600 6.19536 6.63285 6.65198 6.79427 7.09856 7.30337 8.80425 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.002505 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.084630 B =11173.401860 C =12101.345394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.128 4.128 3 C 0.228 3.772 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.981 3.019 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.263 1.263 13 O -0.366 6.366 14 C 0.446 3.554 15 O -0.531 6.531 16 C -0.032 4.032 17 C 0.081 3.919 18 C -0.296 4.296 19 S 0.243 5.757 20 C 0.223 3.777 21 N -0.618 5.618 22 C 0.512 3.488 23 O -0.533 6.533 24 C -0.096 4.096 25 C -0.150 4.150 26 C -0.133 4.133 27 N -0.513 5.513 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.270 0.730 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.209 0.791 37 H 0.431 0.569 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.150 7.157 -9.393 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.804 3.196 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.188 1.188 13 O -0.283 6.283 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.071 4.071 17 C -0.051 4.051 18 C -0.436 4.436 19 S 0.493 5.507 20 C -0.144 4.144 21 N -0.269 5.269 22 C 0.300 3.700 23 O -0.409 6.409 24 C -0.117 4.117 25 C -0.207 4.207 26 C -0.191 4.191 27 N -0.235 5.235 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.226 0.774 37 H 0.272 0.728 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.051 8.169 -8.932 25.155 hybrid contribution 1.812 -1.133 0.636 2.230 sum -20.239 7.036 -8.295 22.977 Atomic orbital electron populations 1.21643 0.96243 1.00185 0.99974 1.21843 0.94385 0.98217 1.02137 1.20284 0.94379 0.89172 0.78738 0.98021 1.21333 0.90604 1.39871 1.06875 0.91452 1.25828 1.04275 0.93926 0.94380 1.70026 1.37498 1.38021 1.09867 0.85262 0.77678 0.78784 0.77863 1.19365 1.20347 1.18777 1.86447 1.36130 1.63345 1.42346 1.24026 0.79444 0.76589 0.90971 1.90611 1.55420 1.58699 1.37343 1.19995 0.91758 1.01816 0.93560 1.19266 0.93737 0.90818 1.01271 1.27553 1.03465 0.99843 1.12711 1.84604 1.02181 1.04590 1.59331 1.23684 0.90654 0.96729 1.03371 1.43060 1.05920 1.14887 1.63013 1.22095 0.85604 0.86315 0.75963 1.90625 1.83614 1.16893 1.49757 1.21396 0.89247 1.00839 1.00186 1.21894 1.04423 1.00913 0.93517 1.21677 0.97515 0.97188 1.02719 1.66009 0.98400 1.39542 1.19599 0.92314 0.95147 0.94319 0.93619 0.89792 0.92122 0.83091 0.84643 0.77410 0.72821 0.84776 0.91750 0.93053 0.88348 0.92362 0.88943 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.57 71.98 0.62 -5.02 16 2 C -0.13 -6.61 5.49 30.60 0.17 -6.45 16 3 C 0.23 12.67 2.25 29.85 0.07 12.73 16 4 H 0.00 0.13 7.16 -2.39 -0.02 0.11 16 5 C -0.55 -31.57 8.90 25.60 0.23 -31.34 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -53.33 11.30 21.45 0.24 -53.09 16 9 Si 0.98 43.29 29.54 68.60 2.03 45.31 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 O -0.37 -17.74 9.81 -51.43 -0.50 -18.24 16 14 C 0.45 19.02 6.38 71.23 0.45 19.47 16 15 O -0.53 -26.09 12.58 21.96 0.28 -25.81 16 16 C -0.03 -0.93 6.30 29.10 0.18 -0.74 16 17 C 0.08 2.45 5.63 41.45 0.23 2.69 16 18 C -0.30 -7.27 11.05 66.73 0.74 -6.53 16 19 S 0.24 6.16 20.22 -56.49 -1.14 5.02 16 20 C 0.22 6.40 8.19 179.21 1.47 7.87 16 21 N -0.62 -13.58 5.30 -313.65 -1.66 -15.24 16 22 C 0.51 9.99 7.12 87.66 0.62 10.61 16 23 O -0.53 -13.40 13.45 -3.04 -0.04 -13.44 16 24 C -0.10 -1.03 3.26 -11.54 -0.04 -1.07 16 25 C -0.15 -1.46 9.09 71.98 0.65 -0.81 16 26 C -0.13 -1.41 8.48 71.98 0.61 -0.80 16 27 N -0.51 -17.06 9.73 -189.60 -1.84 -18.91 16 28 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.03 1.48 7.80 -2.39 -0.02 1.46 16 30 H 0.04 1.72 6.06 -2.39 -0.01 1.71 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 4.74 5.95 -2.39 -0.01 4.72 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.15 3.31 8.03 -2.38 -0.02 3.29 16 35 H 0.14 3.36 8.14 -2.38 -0.02 3.34 16 36 H 0.21 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.43 7.75 8.24 -92.71 -0.76 6.98 16 38 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.65 7.56 -2.39 -0.02 0.63 16 40 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 Total: -1.00 -77.20 377.40 4.07 -73.13 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.26 Total: 19.36 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.46 Total: 1.91 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -3.26 Total: -87.24 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -0.27 Total: -57.49 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -1.14 Total: 5.02 kcal Total: -77.20 4.07 -73.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187961777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.563 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds