Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 N 1.46502 * 109.46841 * 120.00174 * 2 1 3 5 5 C 1.46499 * 120.00039 * 299.99283 * 4 2 1 6 6 C 1.34779 * 120.00171 * 120.00337 * 4 2 1 7 7 O 1.21555 * 120.00043 * 4.29895 * 6 4 2 8 8 C 1.47838 * 120.00102 * 184.30632 * 6 4 2 9 9 C 1.39579 * 120.14776 * 148.06516 * 8 6 4 10 10 C 1.37952 * 119.85617 * 180.02562 * 9 8 6 11 11 C 1.38357 * 120.14481 * 0.02562 * 10 9 8 12 12 S 1.76203 * 119.85320 * 179.97438 * 11 10 9 13 13 O 1.42097 * 106.40333 * 336.45937 * 12 11 10 14 14 O 1.42107 * 106.40238 * 203.54218 * 12 11 10 15 15 N 1.65594 * 107.21825 * 90.00503 * 12 11 10 16 16 C 1.46496 * 120.00243 * 64.99577 * 15 12 11 17 17 C 1.50701 * 109.47128 * 164.72809 * 16 15 12 18 18 H 1.08001 * 120.00187 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00229 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00378 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47238 * 59.99887 * 21 19 17 23 23 H 1.48502 * 109.47498 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46867 * 300.00086 * 21 19 17 25 25 C 1.38358 * 120.29325 * 0.23435 * 11 10 9 26 26 C 1.37962 * 120.14286 * 359.48579 * 25 11 10 27 27 H 1.09008 * 109.47176 * 60.00273 * 1 2 3 28 28 H 1.09003 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47349 * 300.00592 * 1 2 3 30 30 H 1.09003 * 109.47320 * 239.99809 * 2 1 3 31 31 H 1.09005 * 109.47128 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46884 * 299.99596 * 3 2 1 33 33 H 1.08993 * 109.46755 * 60.00137 * 3 2 1 34 34 H 1.08996 * 109.47373 * 274.53408 * 5 4 2 35 35 H 1.09008 * 109.46513 * 34.53166 * 5 4 2 36 36 H 1.09002 * 109.46987 * 154.52901 * 5 4 2 37 37 H 1.08000 * 120.07111 * 359.97438 * 9 8 6 38 38 H 1.07999 * 119.92837 * 180.02562 * 10 9 8 39 39 H 0.97010 * 119.99740 * 244.72464 * 15 12 11 40 40 H 1.09004 * 109.47359 * 284.72556 * 16 15 12 41 41 H 1.09001 * 109.47399 * 44.73098 * 16 15 12 42 42 H 0.96999 * 120.00221 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.93070 * 179.74395 * 25 11 10 44 44 H 1.07994 * 120.07426 * 180.25519 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7931 -1.7865 1.0726 7 8 3.1515 -2.1564 -0.0285 8 6 3.2071 -2.5387 2.2761 9 6 3.3955 -3.9200 2.2090 10 6 3.7814 -4.6160 3.3358 11 6 3.9811 -3.9478 4.5308 12 16 4.4733 -4.8445 5.9655 13 8 4.0549 -6.1873 5.7626 14 8 4.0702 -4.0654 7.0835 15 7 6.1290 -4.8683 5.9847 16 6 6.8777 -3.6195 6.1456 17 6 8.3074 -3.9335 6.5037 18 1 8.6264 -4.9607 6.6021 19 6 9.2082 -2.9096 6.7069 20 7 8.8197 -1.6587 6.5877 21 14 10.9802 -3.2988 7.1515 22 1 11.5956 -4.1085 6.0694 23 1 11.7390 -2.0329 7.3157 24 1 11.0147 -4.0646 8.4234 25 6 3.7909 -2.5794 4.6054 26 6 3.4107 -1.8706 3.4845 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9562 0.8900 34 1 2.3705 0.5856 2.8228 35 1 0.6570 0.2257 2.5024 36 1 1.7022 -1.0092 3.2450 37 1 3.2387 -4.4430 1.2772 38 1 3.9279 -5.6848 3.2852 39 1 6.6030 -5.7097 5.8933 40 1 6.8520 -3.0575 5.2120 41 1 6.4264 -3.0250 6.9400 42 1 9.4533 -0.9384 6.7309 43 1 3.9445 -2.0644 5.5422 44 1 3.2665 -0.8020 3.5431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263981587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -69.426269 kcal Electronic energy + Delta-G solvation = -27404.919218 eV Core-core repulsion = 23450.033093 eV Total energy + Delta-G solvation = -3954.886126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80415 -38.60609 -36.81310 -36.75456 -35.41879 -34.68090 -33.39847 -32.19390 -31.24148 -30.80926 -27.60573 -27.48088 -26.78441 -24.68818 -22.97016 -22.50380 -21.65530 -19.67608 -19.18005 -17.82062 -17.67755 -17.30114 -16.71023 -15.96708 -15.93352 -15.53249 -15.05765 -14.85242 -14.73002 -14.46387 -14.23186 -13.79282 -13.56450 -13.50275 -13.36958 -13.09777 -12.95254 -12.63795 -12.51181 -12.44824 -12.19574 -12.11251 -11.86518 -11.67696 -11.65955 -11.57537 -11.26203 -11.13649 -10.95630 -10.82900 -10.72242 -10.17159 -10.07481 -9.49639 -9.38625 -9.11812 -8.97777 -8.94526 -8.28358 -6.21345 -4.25963 0.36191 0.91958 1.22993 2.45134 2.60204 3.25363 3.29874 3.31630 3.40001 3.68579 4.13797 4.18589 4.32079 4.47256 4.56671 4.67695 4.69368 4.82622 4.88934 4.91466 5.11190 5.15936 5.18664 5.19615 5.24239 5.36141 5.41478 5.42505 5.50309 5.56814 5.77180 5.84975 5.85909 5.94944 6.04568 6.07892 6.23727 6.37189 6.68026 7.00073 7.22760 7.28234 7.73521 7.76350 7.84409 8.12809 8.77630 9.39200 10.88991 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.003029 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.241760 B = 9241.817363 C =10522.502482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.161 4.161 4 N -0.605 5.605 5 C 0.052 3.948 6 C 0.560 3.440 7 O -0.531 6.531 8 C -0.087 4.087 9 C -0.088 4.088 10 C -0.026 4.026 11 C -0.647 4.647 12 S 2.689 3.311 13 O -0.977 6.977 14 O -0.959 6.959 15 N -1.101 6.101 16 C 0.245 3.755 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.020 4.020 26 C -0.125 4.125 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.412 0.588 40 H 0.022 0.978 41 H 0.040 0.960 42 H 0.267 0.733 43 H 0.150 0.850 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 4.448 -10.438 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.338 5.338 5 C -0.090 4.090 6 C 0.349 3.651 7 O -0.408 6.408 8 C -0.090 4.090 9 C -0.108 4.108 10 C -0.045 4.045 11 C -0.732 4.732 12 S 2.776 3.224 13 O -0.967 6.967 14 O -0.949 6.949 15 N -0.864 5.864 16 C 0.122 3.878 17 C -0.570 4.570 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.039 4.039 26 C -0.143 4.143 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.247 0.753 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.168 0.832 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.710 4.303 -10.417 20.156 hybrid contribution 1.338 0.154 -0.449 1.419 sum -15.372 4.457 -10.866 19.345 Atomic orbital electron populations 1.22152 0.94732 1.02562 1.02536 1.21118 0.94125 0.93342 0.88741 1.22141 1.02024 0.95302 1.02488 1.47804 1.50665 1.27850 1.07509 1.22545 1.01351 1.00939 0.84179 1.18429 0.77987 0.79955 0.88772 1.90777 1.54859 1.67988 1.27200 1.20095 1.00829 0.94785 0.93327 1.21252 0.97965 0.92589 0.99000 1.20896 0.92647 1.00401 0.90553 1.31502 1.14363 1.07410 1.19930 1.01978 0.73368 0.73055 0.74003 1.93535 1.81768 1.34670 1.86713 1.93574 1.81909 1.72007 1.47380 1.55434 1.23587 1.17845 1.89503 1.19110 0.92282 0.79448 0.96927 1.21148 0.93410 0.93481 1.49004 0.91603 1.24962 0.99346 0.94834 0.94984 1.69917 1.35676 0.98673 1.48569 0.86466 0.83602 0.77688 0.79133 1.20071 1.21110 1.19989 1.21016 0.91395 0.92036 0.99471 1.21977 0.99308 1.01311 0.91741 0.91191 0.92191 0.92096 0.87969 0.92023 0.91274 0.92158 0.91600 0.90863 0.88693 0.84336 0.83599 0.75337 0.95983 0.94256 0.92382 0.83186 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.16 37.15 0.34 -0.72 16 2 C 0.13 1.12 3.25 -67.93 -0.22 0.90 16 3 C -0.16 -1.15 9.19 37.16 0.34 -0.80 16 4 N -0.61 -6.13 2.76 -175.05 -0.48 -6.62 16 5 C 0.05 0.39 7.88 59.85 0.47 0.86 16 6 C 0.56 7.52 7.44 -12.33 -0.09 7.43 16 7 O -0.53 -8.72 16.09 5.32 0.09 -8.63 16 8 C -0.09 -1.18 5.47 -104.97 -0.57 -1.75 16 9 C -0.09 -1.21 9.60 -39.19 -0.38 -1.58 16 10 C -0.03 -0.37 9.50 -39.64 -0.38 -0.74 16 11 C -0.65 -10.16 5.95 -39.49 -0.24 -10.39 16 12 S 2.69 47.62 5.74 -107.50 -0.62 47.00 16 13 O -0.98 -18.04 17.27 -57.17 -0.99 -19.03 16 14 O -0.96 -19.42 16.73 -57.17 -0.96 -20.38 16 15 N -1.10 -21.42 5.99 -11.66 -0.07 -21.49 16 16 C 0.25 5.86 5.98 -5.20 -0.03 5.82 16 17 C -0.53 -13.92 9.27 -34.44 -0.32 -14.24 16 18 H 0.07 1.65 7.65 -52.49 -0.40 1.25 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 21 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.02 -0.30 9.50 -39.64 -0.38 -0.67 16 26 C -0.12 -1.58 7.44 -39.18 -0.29 -1.87 16 27 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.34 6.69 -51.93 -0.35 -0.01 16 30 H 0.10 1.07 6.91 -51.93 -0.36 0.71 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.07 0.43 7.44 -51.93 -0.39 0.04 16 35 H 0.07 0.40 6.45 -51.92 -0.33 0.07 16 36 H 0.09 0.74 4.72 -51.93 -0.24 0.50 16 37 H 0.14 1.69 7.96 -52.49 -0.42 1.28 16 38 H 0.15 1.82 7.60 -52.49 -0.40 1.42 16 39 H 0.41 7.31 8.54 -34.47 -0.29 7.02 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.15 2.13 7.60 -52.49 -0.40 1.73 16 44 H 0.15 1.46 4.80 -52.49 -0.25 1.21 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -33.81 374.61 -9.39 -43.20 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.88 Total: 5.09 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.84 Total: -16.19 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.18 Total: -52.22 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.86 Total: -48.04 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.62 Total: 47.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.81 -9.39 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263981587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.230 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds