Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 N 1.46502 * 109.46841 * 120.00174 * 2 1 3 5 5 C 1.46499 * 120.00039 * 299.99283 * 4 2 1 6 6 C 1.34779 * 120.00171 * 120.00337 * 4 2 1 7 7 O 1.21555 * 120.00043 * 4.29895 * 6 4 2 8 8 C 1.47838 * 120.00102 * 184.30632 * 6 4 2 9 9 C 1.39579 * 120.14776 * 148.06516 * 8 6 4 10 10 C 1.37952 * 119.85617 * 180.02562 * 9 8 6 11 11 C 1.38357 * 120.14481 * 0.02562 * 10 9 8 12 12 S 1.76203 * 119.85320 * 179.97438 * 11 10 9 13 13 O 1.42097 * 106.40333 * 336.45937 * 12 11 10 14 14 O 1.42107 * 106.40238 * 203.54218 * 12 11 10 15 15 N 1.65594 * 107.21825 * 90.00503 * 12 11 10 16 16 C 1.46496 * 120.00243 * 64.99577 * 15 12 11 17 17 C 1.50701 * 109.47128 * 164.72809 * 16 15 12 18 18 H 1.08001 * 120.00187 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00229 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00378 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47238 * 59.99887 * 21 19 17 23 23 H 1.48502 * 109.47498 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.46867 * 300.00086 * 21 19 17 25 25 C 1.38358 * 120.29325 * 0.23435 * 11 10 9 26 26 C 1.37962 * 120.14286 * 359.48579 * 25 11 10 27 27 H 1.09008 * 109.47176 * 60.00273 * 1 2 3 28 28 H 1.09003 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47349 * 300.00592 * 1 2 3 30 30 H 1.09003 * 109.47320 * 239.99809 * 2 1 3 31 31 H 1.09005 * 109.47128 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46884 * 299.99596 * 3 2 1 33 33 H 1.08993 * 109.46755 * 60.00137 * 3 2 1 34 34 H 1.08996 * 109.47373 * 274.53408 * 5 4 2 35 35 H 1.09008 * 109.46513 * 34.53166 * 5 4 2 36 36 H 1.09002 * 109.46987 * 154.52901 * 5 4 2 37 37 H 1.08000 * 120.07111 * 359.97438 * 9 8 6 38 38 H 1.07999 * 119.92837 * 180.02562 * 10 9 8 39 39 H 0.97010 * 119.99740 * 244.72464 * 15 12 11 40 40 H 1.09004 * 109.47359 * 284.72556 * 16 15 12 41 41 H 1.09001 * 109.47399 * 44.73098 * 16 15 12 42 42 H 0.96999 * 120.00221 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.93070 * 179.74395 * 25 11 10 44 44 H 1.07994 * 120.07426 * 180.25519 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7931 -1.7865 1.0726 7 8 3.1515 -2.1564 -0.0285 8 6 3.2071 -2.5387 2.2761 9 6 3.3955 -3.9200 2.2090 10 6 3.7814 -4.6160 3.3358 11 6 3.9811 -3.9478 4.5308 12 16 4.4733 -4.8445 5.9655 13 8 4.0549 -6.1873 5.7626 14 8 4.0702 -4.0654 7.0835 15 7 6.1290 -4.8683 5.9847 16 6 6.8777 -3.6195 6.1456 17 6 8.3074 -3.9335 6.5037 18 1 8.6264 -4.9607 6.6021 19 6 9.2082 -2.9096 6.7069 20 7 8.8197 -1.6587 6.5877 21 14 10.9802 -3.2988 7.1515 22 1 11.5956 -4.1085 6.0694 23 1 11.7390 -2.0329 7.3157 24 1 11.0147 -4.0646 8.4234 25 6 3.7909 -2.5794 4.6054 26 6 3.4107 -1.8706 3.4845 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9562 0.8900 34 1 2.3705 0.5856 2.8228 35 1 0.6570 0.2257 2.5024 36 1 1.7022 -1.0092 3.2450 37 1 3.2387 -4.4430 1.2772 38 1 3.9279 -5.6848 3.2852 39 1 6.6030 -5.7097 5.8933 40 1 6.8520 -3.0575 5.2120 41 1 6.4264 -3.0250 6.9400 42 1 9.4533 -0.9384 6.7309 43 1 3.9445 -2.0644 5.5422 44 1 3.2665 -0.8020 3.5431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263981587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -93.245478 kcal Electronic energy + Delta-G solvation = -27405.952097 eV Core-core repulsion = 23450.033093 eV Total energy + Delta-G solvation = -3955.919004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78356 -39.65454 -38.32112 -37.65889 -36.94977 -36.47508 -34.25052 -34.11823 -32.35202 -31.77580 -28.72341 -28.23921 -28.12076 -25.73426 -24.51780 -23.96337 -22.55665 -20.65893 -20.47868 -19.30613 -18.84543 -18.61118 -17.76470 -17.62868 -17.22719 -16.79390 -16.43421 -16.02011 -15.78686 -15.62902 -15.20515 -14.97086 -14.78922 -14.61094 -14.37372 -14.18576 -14.10129 -13.99501 -13.84541 -13.58066 -13.25763 -13.16307 -13.14761 -13.03105 -12.87901 -12.73410 -12.56506 -12.29872 -12.19672 -12.11929 -12.04028 -11.78959 -11.43460 -11.15568 -10.82385 -10.52906 -10.16637 -10.11161 -9.81840 -8.24107 -6.35367 -0.81773 -0.49321 0.13454 1.38519 1.46048 1.47714 1.55370 1.76466 2.09534 2.38345 2.43990 2.76844 3.11139 3.22591 3.28608 3.67314 3.73112 3.89555 4.06303 4.09325 4.17596 4.24207 4.29396 4.42209 4.54778 4.60359 4.64395 4.71340 4.77726 4.81053 4.83441 4.90283 4.91581 4.97496 5.01824 5.24039 5.28506 5.30831 5.32293 5.47392 5.58788 5.75334 5.98365 6.13004 6.30944 6.78033 6.87547 7.33952 8.86625 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.003029 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.241760 B = 9241.817363 C =10522.502482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 C -0.156 4.156 4 N -0.596 5.596 5 C 0.041 3.959 6 C 0.554 3.446 7 O -0.571 6.571 8 C -0.090 4.090 9 C -0.092 4.092 10 C -0.030 4.030 11 C -0.657 4.657 12 S 2.708 3.292 13 O -0.983 6.983 14 O -0.987 6.987 15 N -1.102 6.102 16 C 0.258 3.742 17 C -0.551 4.551 18 H 0.074 0.926 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.035 4.035 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.419 0.581 40 H 0.013 0.987 41 H 0.018 0.982 42 H 0.269 0.731 43 H 0.151 0.849 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.902 5.292 -10.866 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 C -0.214 4.214 4 N -0.328 5.328 5 C -0.100 4.100 6 C 0.343 3.657 7 O -0.451 6.451 8 C -0.093 4.093 9 C -0.112 4.112 10 C -0.049 4.049 11 C -0.745 4.745 12 S 2.799 3.201 13 O -0.973 6.973 14 O -0.977 6.977 15 N -0.864 5.864 16 C 0.133 3.867 17 C -0.591 4.591 18 H 0.092 0.908 19 C -0.190 4.190 20 N -0.562 5.562 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.054 4.054 26 C -0.132 4.132 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.179 0.821 39 H 0.255 0.745 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.168 0.832 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.341 5.132 -10.797 21.062 hybrid contribution 1.395 -0.052 -0.393 1.450 sum -15.946 5.080 -11.191 20.132 Atomic orbital electron populations 1.22107 0.92701 1.02310 1.04142 1.21289 0.95652 0.93766 0.87248 1.22105 1.00855 0.94285 1.04116 1.47957 1.49025 1.26574 1.09218 1.22787 1.03423 1.01226 0.82533 1.18465 0.78446 0.80785 0.88032 1.90757 1.56749 1.69328 1.28298 1.20299 1.00307 0.94976 0.93747 1.21450 0.97557 0.92970 0.99225 1.21086 0.92441 1.01234 0.90111 1.31097 1.16287 1.07868 1.19277 1.01159 0.72323 0.72664 0.73940 1.93520 1.81450 1.35319 1.87013 1.93532 1.82033 1.72538 1.49611 1.55271 1.24257 1.16884 1.89995 1.18699 0.91810 0.80645 0.95501 1.21599 0.94645 0.94018 1.48794 0.90835 1.25834 1.03579 0.94697 0.94875 1.70028 1.37092 0.99557 1.49530 0.85441 0.78558 0.77575 0.79089 1.19213 1.20851 1.19373 1.21178 0.92005 0.91864 1.00347 1.22258 0.97726 1.02661 0.90547 0.89591 0.93357 0.90490 0.90402 0.93791 0.89642 0.90558 0.89984 0.88198 0.89045 0.83176 0.82127 0.74524 0.96959 0.96437 0.92258 0.83161 0.80256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.16 71.98 0.66 -0.99 16 2 C 0.12 1.94 3.25 44.99 0.15 2.09 16 3 C -0.16 -1.87 9.19 71.98 0.66 -1.21 16 4 N -0.60 -11.16 2.76 -826.00 -2.28 -13.44 16 5 C 0.04 0.50 7.88 127.77 1.01 1.50 16 6 C 0.55 14.57 7.44 86.78 0.65 15.22 16 7 O -0.57 -18.94 16.09 -3.89 -0.06 -19.01 16 8 C -0.09 -2.36 5.47 -20.09 -0.11 -2.47 16 9 C -0.09 -2.47 9.60 22.53 0.22 -2.25 16 10 C -0.03 -0.82 9.50 22.23 0.21 -0.61 16 11 C -0.66 -20.52 5.95 22.33 0.13 -20.39 16 12 S 2.71 96.53 5.74 -56.49 -0.32 96.21 16 13 O -0.98 -35.94 17.27 -128.00 -2.21 -38.15 16 14 O -0.99 -40.64 16.73 -128.00 -2.14 -42.78 16 15 N -1.10 -43.30 5.99 -190.79 -1.14 -44.44 16 16 C 0.26 12.53 5.98 85.63 0.51 13.05 16 17 C -0.55 -29.00 9.27 25.60 0.24 -28.76 16 18 H 0.07 3.65 7.65 -2.91 -0.02 3.62 16 19 C 0.01 0.56 5.46 84.65 0.46 1.02 16 20 N -0.92 -51.92 13.29 21.45 0.28 -51.64 16 21 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.03 -1.01 9.50 22.23 0.21 -0.80 16 26 C -0.11 -2.74 7.44 22.53 0.17 -2.57 16 27 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.58 6.69 -2.39 -0.02 0.57 16 30 H 0.08 1.64 6.91 -2.39 -0.02 1.62 16 31 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 34 H 0.08 0.78 7.44 -2.39 -0.02 0.77 16 35 H 0.10 0.72 6.45 -2.38 -0.02 0.70 16 36 H 0.09 1.21 4.72 -2.39 -0.01 1.20 16 37 H 0.15 3.60 7.96 -2.91 -0.02 3.57 16 38 H 0.16 3.88 7.60 -2.91 -0.02 3.86 16 39 H 0.42 14.90 8.54 -96.74 -0.83 14.07 16 40 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.02 0.93 7.75 -2.39 -0.02 0.91 16 42 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.15 4.30 7.60 -2.91 -0.02 4.28 16 44 H 0.18 3.11 4.80 -2.91 -0.01 3.10 16 Total: -1.00 -72.68 374.61 -0.48 -73.16 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.21 Total: 23.46 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 5.16 Total: -27.17 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -3.14 Total: -109.52 kcal Atomic # 8 Polarization: -95.52 SS G_CDS: -4.41 Total: -99.94 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 96.53 SS G_CDS: -0.32 Total: 96.21 kcal Total: -72.68 -0.48 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263981587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.088 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds