Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 N 1.46498 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.37102 * 119.99699 * 263.85885 * 4 3 2 6 6 H 1.08003 * 120.00435 * 186.83984 * 5 4 3 7 7 C 1.38948 * 120.00090 * 6.83579 * 5 4 3 8 8 N 1.31409 * 119.99977 * 27.79612 * 7 5 4 9 9 Si 1.86799 * 120.00211 * 207.79459 * 7 5 4 10 10 H 1.48504 * 109.46831 * 94.98317 * 9 7 5 11 11 H 1.48495 * 109.47190 * 214.98237 * 9 7 5 12 12 H 1.48499 * 109.47342 * 334.98440 * 9 7 5 13 13 C 1.34778 * 120.00504 * 83.85834 * 4 3 2 14 14 O 1.21289 * 119.99886 * 180.02562 * 13 4 3 15 15 C 1.50697 * 119.99656 * 0.02562 * 13 4 3 16 16 C 1.50703 * 109.46972 * 179.97438 * 15 13 4 17 17 C 1.38296 * 119.96147 * 269.97414 * 16 15 13 18 18 C 1.38263 * 120.15409 * 180.02562 * 17 16 15 19 19 C 1.38127 * 120.06870 * 359.74391 * 18 17 16 20 20 C 1.38892 * 119.92487 * 0.53187 * 19 18 17 21 21 N 1.39675 * 120.07350 * 179.74802 * 20 19 18 22 22 S 1.65598 * 120.00002 * 286.04500 * 21 20 19 23 23 C 1.81401 * 104.45006 * 293.92894 * 22 21 20 24 24 O 1.42097 * 104.27901 * 177.86013 * 22 21 20 25 25 O 1.42107 * 104.27910 * 50.00178 * 22 21 20 26 26 C 1.38079 * 119.96213 * 89.99590 * 16 15 13 27 27 H 1.09003 * 109.46768 * 300.00773 * 1 2 3 28 28 H 1.08998 * 109.47027 * 59.99833 * 1 2 3 29 29 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47365 * 239.99218 * 2 1 3 31 31 H 1.09010 * 109.46837 * 119.99510 * 2 1 3 32 32 H 1.08995 * 109.47504 * 59.99898 * 3 2 1 33 33 H 1.08997 * 109.46765 * 299.99826 * 3 2 1 34 34 H 0.97006 * 120.00232 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47436 * 59.99658 * 15 13 4 36 36 H 1.09006 * 109.46886 * 299.99883 * 15 13 4 37 37 H 1.08010 * 119.92765 * 359.97438 * 17 16 15 38 38 H 1.08000 * 119.97166 * 179.97438 * 18 17 16 39 39 H 1.08009 * 120.04108 * 180.27983 * 19 18 17 40 40 H 0.97004 * 119.99976 * 106.04646 * 21 20 19 41 41 H 1.08994 * 109.47212 * 316.25682 * 23 22 21 42 42 H 1.09008 * 109.47055 * 76.25482 * 23 22 21 43 43 H 1.09004 * 109.47517 * 196.25144 * 23 22 21 44 44 H 1.08001 * 120.04089 * 0.02603 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5692 1.1797 6 1 5.2653 1.6803 1.1708 7 6 3.5041 1.5550 2.3874 8 7 2.3651 0.9074 2.4879 9 14 4.1998 2.4562 3.8684 10 1 3.6000 3.8123 3.9492 11 1 3.8790 1.6986 5.1045 12 1 5.6735 2.5743 3.7286 13 6 4.1785 1.3177 -1.1614 14 8 5.3914 1.3172 -1.1617 15 6 3.4245 1.1789 -2.4587 16 6 4.4034 1.0570 -3.5981 17 6 4.8516 2.1924 -4.2480 18 6 5.7493 2.0852 -5.2942 19 6 6.2055 0.8430 -5.6900 20 6 5.7530 -0.2998 -5.0432 21 7 6.2083 -1.5579 -5.4444 22 16 5.6577 -2.2262 -6.8559 23 6 3.8938 -2.5261 -6.5570 24 8 6.3620 -3.4560 -6.9594 25 8 5.8322 -1.1985 -7.8218 26 6 4.8515 -0.1883 -3.9921 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 1.8857 0.8971 3.3311 35 1 2.7981 2.0578 -2.6108 36 1 2.7975 0.2880 -2.4210 37 1 4.4990 3.1652 -3.9383 38 1 6.0971 2.9738 -5.7999 39 1 6.9102 0.7600 -6.5043 40 1 6.8470 -2.0401 -4.8961 41 1 3.7616 -2.9567 -5.5645 42 1 3.3494 -1.5838 -6.6197 43 1 3.5106 -3.2178 -7.3072 44 1 4.5005 -1.0747 -3.4846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264469488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -70.119882 kcal Electronic energy + Delta-G solvation = -27711.810164 eV Core-core repulsion = 23756.893961 eV Total energy + Delta-G solvation = -3954.916203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67687 -38.42847 -37.25936 -36.16363 -35.53179 -34.92621 -32.65828 -31.91910 -31.32838 -29.70546 -29.19518 -27.50126 -25.71569 -24.26507 -22.40245 -21.69857 -20.79872 -19.67429 -18.93526 -17.94079 -17.18185 -16.94322 -16.48671 -16.18042 -16.11455 -15.38000 -15.31789 -14.59317 -14.24346 -13.91333 -13.76063 -13.69625 -13.56638 -13.40818 -13.01195 -12.85051 -12.73598 -12.36392 -12.29899 -12.17936 -12.03850 -11.88026 -11.59903 -11.47625 -11.38750 -11.14848 -11.10866 -11.02428 -10.87598 -10.43426 -10.35886 -10.15934 -9.97344 -9.70193 -8.89886 -8.71987 -8.58646 -8.24151 -7.79803 -6.42248 -3.79547 0.01059 1.40617 1.56126 2.46505 3.11690 3.24264 3.29585 3.56706 3.79275 3.84003 4.00417 4.12445 4.52565 4.75103 4.84369 4.97659 5.06271 5.08431 5.16323 5.31656 5.44513 5.52026 5.63220 5.67623 5.81573 5.84820 5.94357 5.97381 6.12752 6.18235 6.20676 6.35225 6.50829 6.54682 6.58532 6.72411 6.76823 6.79388 6.86834 7.20413 7.22430 7.42635 7.66993 8.05736 8.46938 9.15296 9.40796 9.96444 10.58744 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.002822 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.486132 B = 9921.342921 C =10485.070786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.124 3.876 4 N -0.442 5.442 5 C -0.310 4.310 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.913 3.087 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.443 3.557 14 O -0.585 6.585 15 C -0.099 4.099 16 C -0.036 4.036 17 C -0.096 4.096 18 C -0.113 4.113 19 C -0.110 4.110 20 C 0.113 3.887 21 N -1.061 6.061 22 S 2.611 3.389 23 C -0.671 4.671 24 O -0.961 6.961 25 O -0.951 6.951 26 C -0.103 4.103 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.423 0.577 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 -3.036 -14.156 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.000 4.000 4 N -0.160 5.160 5 C -0.437 4.437 6 H 0.122 0.878 7 C -0.170 4.170 8 N -0.500 5.500 9 Si 0.740 3.260 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.231 3.769 14 O -0.470 6.470 15 C -0.139 4.139 16 C -0.038 4.038 17 C -0.114 4.114 18 C -0.132 4.132 19 C -0.130 4.130 20 C 0.019 3.981 21 N -0.816 5.816 22 S 2.704 3.296 23 C -0.821 4.821 24 O -0.951 6.951 25 O -0.941 6.941 26 C -0.124 4.124 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.423 -3.209 -14.882 15.415 hybrid contribution -0.291 0.123 1.638 1.668 sum -2.714 -3.086 -13.244 13.867 Atomic orbital electron populations 1.21612 0.97239 1.00108 1.00641 1.21900 0.94022 0.98324 1.02186 1.21527 0.80794 0.96825 1.00833 1.43824 1.05205 1.61512 1.05445 1.19711 0.94001 1.47844 0.82146 0.87795 1.25136 0.96445 0.96707 0.98707 1.70126 1.17103 1.36159 1.26581 0.86116 0.79741 0.79738 0.80413 1.20489 1.21188 1.19405 1.19698 0.87957 0.84721 0.84509 1.90541 1.13766 1.55964 1.86725 1.20721 0.97070 1.03684 0.92449 1.19364 0.96986 0.92601 0.94823 1.21123 0.96923 0.98301 0.95078 1.20992 0.97710 0.97068 0.97406 1.21396 0.99614 0.91637 1.00396 1.17133 0.98535 0.83917 0.98542 1.53079 1.57858 1.26158 1.44507 1.04958 0.77435 0.73803 0.73362 1.30520 1.27037 1.12234 1.12339 1.93617 1.70434 1.45792 1.85302 1.93618 1.84934 1.57268 1.58253 1.21194 0.97056 0.97950 0.96228 0.92662 0.94403 0.94052 0.95124 0.88151 0.88093 0.94948 0.92304 0.89491 0.89245 0.85884 0.85651 0.85208 0.73858 0.84988 0.85018 0.85339 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.13 -2.38 5.69 -26.73 -0.15 -2.53 16 3 C 0.12 2.54 4.35 -4.04 -0.02 2.52 16 4 N -0.44 -10.53 2.64 -114.82 -0.30 -10.83 16 5 C -0.31 -8.20 9.42 -14.93 -0.14 -8.34 16 6 H 0.10 2.97 7.32 -52.48 -0.38 2.59 16 7 C 0.03 0.83 4.85 -17.47 -0.08 0.74 16 8 N -0.86 -20.81 8.78 55.50 0.49 -20.32 16 9 Si 0.91 19.79 29.63 -169.99 -5.04 14.75 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.44 10.08 7.57 -10.99 -0.08 9.99 16 14 O -0.59 -15.49 15.62 5.55 0.09 -15.40 16 15 C -0.10 -1.66 4.44 -29.03 -0.13 -1.79 16 16 C -0.04 -0.58 4.37 -104.66 -0.46 -1.03 16 17 C -0.10 -1.39 9.69 -39.55 -0.38 -1.77 16 18 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 19 C -0.11 -1.47 9.15 -39.38 -0.36 -1.83 16 20 C 0.11 1.48 5.76 -83.79 -0.48 1.00 16 21 N -1.06 -11.34 5.60 32.41 0.18 -11.16 16 22 S 2.61 26.01 6.08 -107.50 -0.65 25.35 16 23 C -0.67 -4.60 10.87 101.05 1.10 -3.50 16 24 O -0.96 -12.25 18.08 -57.54 -1.04 -13.29 16 25 O -0.95 -12.37 16.76 -57.54 -0.96 -13.33 16 26 C -0.10 -1.49 9.62 -39.38 -0.38 -1.86 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.54 6.49 -51.93 -0.34 0.20 16 31 H 0.10 2.25 6.41 -51.92 -0.33 1.92 16 32 H 0.10 2.27 5.83 -51.93 -0.30 1.97 16 33 H 0.03 0.57 6.70 -51.93 -0.35 0.22 16 34 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 35 H 0.09 1.29 7.36 -51.93 -0.38 0.91 16 36 H 0.09 1.37 6.38 -51.93 -0.33 1.03 16 37 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.63 7.74 -52.48 -0.41 1.22 16 40 H 0.42 3.98 8.92 -34.47 -0.31 3.68 16 41 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -33.69 374.72 -9.27 -42.96 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.07 Total: 7.67 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.60 Total: -12.05 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.37 Total: -42.31 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.92 Total: -42.02 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.04 Total: 14.75 kcal Atomic # 16 Polarization: 26.01 SS G_CDS: -0.65 Total: 25.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.69 -9.27 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264469488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.157 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds