Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21687 * 119.99471 * 0.02562 * 14 13 3 16 16 C 1.46828 * 120.00648 * 180.02562 * 14 13 3 17 17 C 1.38007 * 126.68585 * 0.02562 * 16 14 13 18 18 N 1.34581 * 108.89043 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.99021 * 179.97438 * 18 17 16 20 20 N 1.40014 * 110.02430 * 0.02562 * 18 17 16 21 21 C 1.36623 * 108.24694 * 359.73478 * 20 18 17 22 22 N 1.32082 * 122.61457 * 180.26047 * 21 20 18 23 23 C 1.33875 * 121.96779 * 0.17597 * 22 21 20 24 24 O 1.21971 * 120.78810 * 179.97438 * 23 22 21 25 25 C 1.47507 * 118.42674 * 359.97438 * 23 22 21 26 26 C 1.39273 * 121.83731 * 179.97438 * 25 23 22 27 27 C 1.37862 * 119.48036 * 179.10084 * 26 25 23 28 28 C 1.38729 * 120.44277 * 1.27698 * 27 26 25 29 29 C 1.37940 * 120.66111 * 358.97849 * 28 27 26 30 30 C 1.38407 * 131.56782 * 179.97438 * 20 18 17 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 38 38 H 1.08003 * 125.55518 * 359.94953 * 17 16 14 39 39 H 1.07993 * 120.25625 * 0.03208 * 26 25 23 40 40 H 1.07993 * 119.77170 * 180.25002 * 27 26 25 41 41 H 1.07998 * 119.67031 * 178.99476 * 28 27 26 42 42 H 1.07995 * 120.15196 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4312 16 6 0.0468 3.3214 2.6213 17 6 0.8142 3.4391 3.7623 18 7 0.1092 4.1063 4.6945 19 1 0.4272 4.3186 5.5860 20 7 -1.1510 4.4481 4.1891 21 6 -1.2361 3.9885 2.9054 22 7 -2.3101 4.1627 2.1566 23 6 -3.3921 4.8086 2.6085 24 8 -4.3723 4.9576 1.8981 25 6 -3.3708 5.3359 3.9860 26 6 -4.4566 6.0192 4.5280 27 6 -4.3913 6.4751 5.8274 28 6 -3.2448 6.2802 6.5839 29 6 -2.1602 5.6100 6.0575 30 6 -2.2153 5.1261 4.7575 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.8293 -0.0604 -2.9502 37 1 2.2719 2.1232 1.9977 38 1 1.8169 3.0576 3.8869 39 1 -5.3485 6.1774 3.9400 40 1 -5.2321 7.0019 6.2537 41 1 -3.2012 6.6569 7.5951 42 1 -1.2720 5.4626 6.6539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273822186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = 70.534593 kcal Electronic energy + Delta-G solvation = -28758.829580 eV Core-core repulsion = 24706.861413 eV Total energy + Delta-G solvation = -4051.968167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61345 -39.96516 -38.60768 -38.11330 -35.80595 -34.94040 -33.56885 -32.34776 -31.47777 -31.09926 -30.27051 -29.72389 -26.93491 -24.60224 -24.37347 -23.65859 -22.66120 -22.41213 -20.46322 -19.73052 -19.22236 -19.00589 -17.79725 -16.85876 -16.64907 -16.62034 -16.32364 -15.56739 -15.20335 -15.06346 -14.59145 -14.51819 -14.48672 -14.24819 -14.17744 -13.45188 -13.22999 -12.97355 -12.65384 -12.60554 -11.97120 -11.92612 -11.72875 -11.46484 -11.22023 -10.95120 -10.94234 -10.83535 -10.60794 -10.28682 -10.11574 -9.60126 -9.55524 -9.12514 -8.99730 -8.94788 -8.92096 -8.47248 -8.01153 -7.72850 -6.10178 -4.19879 0.23255 0.38045 0.55990 1.04911 1.62879 2.87306 2.89476 3.23744 3.31319 3.33207 3.57740 3.83663 3.91715 4.08640 4.11722 4.16793 4.27489 4.39708 4.51139 4.59283 4.67717 4.73887 4.93057 5.14273 5.21279 5.28986 5.42501 5.63344 5.75458 5.85438 5.98555 6.20564 6.23735 6.49585 6.57255 6.76213 6.77486 7.13072 7.30999 7.44950 7.51398 7.65655 7.78260 7.84099 7.95185 8.22817 8.27698 8.69541 8.82092 9.21332 9.47816 10.95104 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.002662 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.248828 B =10514.047731 C =11320.677987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.574 3.426 15 O -0.512 6.512 16 C -0.244 4.244 17 C 0.195 3.805 18 N -0.470 5.470 19 H 0.448 0.552 20 N -0.348 5.348 21 C 0.487 3.513 22 N -0.561 5.561 23 C 0.533 3.467 24 O -0.495 6.495 25 C -0.189 4.189 26 C -0.024 4.024 27 C -0.147 4.147 28 C -0.060 4.060 29 C -0.166 4.166 30 C 0.191 3.809 31 H 0.021 0.979 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.098 0.902 36 H 0.264 0.736 37 H 0.381 0.619 38 H 0.223 0.777 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 9.961 24.378 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.358 3.642 15 O -0.388 6.388 16 C -0.262 4.262 17 C 0.056 3.944 18 N -0.185 5.185 19 H 0.295 0.705 20 N -0.138 5.138 21 C 0.231 3.769 22 N -0.305 5.305 23 C 0.319 3.681 24 O -0.371 6.371 25 C -0.198 4.198 26 C -0.043 4.043 27 C -0.166 4.166 28 C -0.079 4.079 29 C -0.187 4.187 30 C 0.092 3.908 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.213 0.787 38 H 0.239 0.761 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.728 9.848 22.549 25.509 hybrid contribution 1.644 0.391 1.751 2.433 sum -5.083 10.239 24.300 26.854 Atomic orbital electron populations 1.21851 0.98123 0.98030 1.01597 1.21935 0.92741 0.99717 1.02138 1.18797 0.94056 0.89165 0.80809 0.93011 1.21233 0.90660 1.38996 1.06275 0.92094 1.24887 0.98428 0.94926 0.95472 1.69911 1.34964 1.37505 1.09275 0.86431 0.85065 0.77695 0.78067 1.19851 1.20973 1.20947 1.46277 1.13897 1.56898 1.18573 1.16654 0.83116 0.79336 0.85087 1.90900 1.50853 1.58391 1.38615 1.20747 0.92162 1.14974 0.98268 1.23261 0.96648 0.88327 0.86180 1.43451 1.03726 1.55029 1.16336 0.70489 1.45170 1.05318 1.50023 1.13249 1.21722 0.93170 0.85614 0.76357 1.69112 1.00826 1.29542 1.31055 1.18793 0.86207 0.78684 0.84398 1.90800 1.32153 1.55337 1.58768 1.21319 0.93906 1.05908 0.98710 1.21228 0.96926 0.91557 0.94603 1.21279 0.98873 1.02169 0.94281 1.21142 0.91892 0.95010 0.99898 1.20555 1.01107 1.03954 0.93085 1.17853 0.84382 0.94586 0.93973 0.95997 0.92965 0.94111 0.95132 0.88382 0.92597 0.78697 0.76105 0.83347 0.84569 0.84575 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.84 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -13.27 8.73 -34.44 -0.30 -13.57 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.71 -13.23 5.01 -56.20 -0.28 -13.51 16 14 C 0.57 11.17 6.36 -12.79 -0.08 11.09 16 15 O -0.51 -12.64 13.98 5.20 0.07 -12.57 16 16 C -0.24 -3.54 6.31 -102.80 -0.65 -4.19 16 17 C 0.20 1.43 11.45 -16.43 -0.19 1.24 16 18 N -0.47 -2.85 7.02 30.90 0.22 -2.63 16 19 H 0.45 0.59 8.62 -182.66 -1.58 -0.99 16 20 N -0.35 -3.92 3.92 -8.39 -0.03 -3.95 16 21 C 0.49 7.90 7.96 -154.19 -1.23 6.67 16 22 N -0.56 -11.43 10.32 -10.96 -0.11 -11.55 16 23 C 0.53 10.15 7.95 -12.88 -0.10 10.05 16 24 O -0.49 -10.78 17.45 4.95 0.09 -10.70 16 25 C -0.19 -2.59 5.88 -104.88 -0.62 -3.21 16 26 C -0.02 -0.25 9.67 -39.33 -0.38 -0.63 16 27 C -0.15 -1.03 10.03 -39.54 -0.40 -1.43 16 28 C -0.06 -0.35 10.02 -39.51 -0.40 -0.75 16 29 C -0.17 -1.15 9.87 -39.47 -0.39 -1.54 16 30 C 0.19 2.10 6.66 -83.82 -0.56 1.54 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 33 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.38 5.46 7.45 -40.82 -0.30 5.15 16 38 H 0.22 0.51 7.43 -52.48 -0.39 0.12 16 39 H 0.15 1.52 7.81 -52.49 -0.41 1.11 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 0.46 7.72 -52.49 -0.41 0.06 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -39.76 356.74 -10.16 -49.92 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.72 Total: 1.02 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -5.37 Total: 7.32 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.42 Total: -55.20 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.27 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.76 -10.16 -49.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273822186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.452 kcal (2) G-P(sol) polarization free energy of solvation -39.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds