Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21687 * 119.99471 * 0.02562 * 14 13 3 16 16 C 1.46828 * 120.00648 * 180.02562 * 14 13 3 17 17 C 1.38007 * 126.68585 * 0.02562 * 16 14 13 18 18 N 1.34581 * 108.89043 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.99021 * 179.97438 * 18 17 16 20 20 N 1.40014 * 110.02430 * 0.02562 * 18 17 16 21 21 C 1.36623 * 108.24694 * 359.73478 * 20 18 17 22 22 N 1.32082 * 122.61457 * 180.26047 * 21 20 18 23 23 C 1.33875 * 121.96779 * 0.17597 * 22 21 20 24 24 O 1.21971 * 120.78810 * 179.97438 * 23 22 21 25 25 C 1.47507 * 118.42674 * 359.97438 * 23 22 21 26 26 C 1.39273 * 121.83731 * 179.97438 * 25 23 22 27 27 C 1.37862 * 119.48036 * 179.10084 * 26 25 23 28 28 C 1.38729 * 120.44277 * 1.27698 * 27 26 25 29 29 C 1.37940 * 120.66111 * 358.97849 * 28 27 26 30 30 C 1.38407 * 131.56782 * 179.97438 * 20 18 17 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 38 38 H 1.08003 * 125.55518 * 359.94953 * 17 16 14 39 39 H 1.07993 * 120.25625 * 0.03208 * 26 25 23 40 40 H 1.07993 * 119.77170 * 180.25002 * 27 26 25 41 41 H 1.07998 * 119.67031 * 178.99476 * 28 27 26 42 42 H 1.07995 * 120.15196 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4312 16 6 0.0468 3.3214 2.6213 17 6 0.8142 3.4391 3.7623 18 7 0.1092 4.1063 4.6945 19 1 0.4272 4.3186 5.5860 20 7 -1.1510 4.4481 4.1891 21 6 -1.2361 3.9885 2.9054 22 7 -2.3101 4.1627 2.1566 23 6 -3.3921 4.8086 2.6085 24 8 -4.3723 4.9576 1.8981 25 6 -3.3708 5.3359 3.9860 26 6 -4.4566 6.0192 4.5280 27 6 -4.3913 6.4751 5.8274 28 6 -3.2448 6.2802 6.5839 29 6 -2.1602 5.6100 6.0575 30 6 -2.2153 5.1261 4.7575 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.8293 -0.0604 -2.9502 37 1 2.2719 2.1232 1.9977 38 1 1.8169 3.0576 3.8869 39 1 -5.3485 6.1774 3.9400 40 1 -5.2321 7.0019 6.2537 41 1 -3.2012 6.6569 7.5951 42 1 -1.2720 5.4626 6.6539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273822186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = 37.368035 kcal Electronic energy + Delta-G solvation = -28760.267790 eV Core-core repulsion = 24706.861413 eV Total energy + Delta-G solvation = -4053.406377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.54648 -40.93437 -40.13611 -39.13450 -36.90947 -36.69658 -34.62050 -34.10925 -32.81694 -32.18617 -31.35330 -30.70008 -28.78365 -25.56064 -25.39447 -24.93775 -24.20033 -23.35357 -21.75427 -20.99989 -20.71223 -19.94376 -18.94703 -18.31221 -17.62595 -17.53750 -17.24802 -17.07005 -16.88118 -16.06519 -15.92457 -15.71034 -15.55227 -15.40593 -15.19692 -14.79393 -14.55997 -14.22607 -14.07132 -13.67234 -13.38041 -13.21716 -13.09336 -12.76476 -12.64018 -12.63037 -12.53606 -12.24217 -12.05938 -11.96013 -11.67798 -11.48677 -10.92799 -10.69039 -10.43914 -10.31775 -10.17526 -9.76315 -9.47789 -9.03464 -8.05849 -6.22979 -0.59340 -0.41362 -0.25079 0.31312 0.55683 1.51643 1.52916 1.64187 2.01852 2.07156 2.46005 2.57126 2.60558 2.89898 2.97984 3.13143 3.24913 3.34392 3.56293 3.71568 3.97350 4.05284 4.15233 4.21000 4.34358 4.50593 4.57266 4.62551 4.64756 4.78608 4.88349 4.89811 5.16844 5.19317 5.28929 5.36547 5.40669 5.54242 5.64955 5.67443 5.75648 5.90841 6.06419 6.17186 6.27586 6.61316 6.87400 7.15152 7.20896 7.45318 7.82660 9.00155 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.002662 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.248828 B =10514.047731 C =11320.677987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C 0.281 3.719 4 H -0.011 1.011 5 C -0.535 4.535 6 H 0.086 0.914 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.971 3.029 10 H -0.249 1.249 11 H -0.284 1.284 12 H -0.293 1.293 13 N -0.695 5.695 14 C 0.575 3.425 15 O -0.583 6.583 16 C -0.312 4.312 17 C 0.278 3.722 18 N -0.417 5.417 19 H 0.481 0.519 20 N -0.346 5.346 21 C 0.469 3.531 22 N -0.643 5.643 23 C 0.513 3.487 24 O -0.567 6.567 25 C -0.220 4.220 26 C -0.047 4.047 27 C -0.129 4.129 28 C -0.042 4.042 29 C -0.145 4.145 30 C 0.172 3.828 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.261 0.739 37 H 0.408 0.592 38 H 0.291 0.709 39 H 0.132 0.868 40 H 0.170 0.830 41 H 0.189 0.811 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 11.246 32.051 33.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.007 0.993 5 C -0.574 4.574 6 H 0.104 0.896 7 C -0.191 4.191 8 N -0.560 5.560 9 Si 0.796 3.204 10 H -0.173 1.173 11 H -0.210 1.210 12 H -0.220 1.220 13 N -0.346 5.346 14 C 0.363 3.637 15 O -0.463 6.463 16 C -0.329 4.329 17 C 0.133 3.867 18 N -0.134 5.134 19 H 0.335 0.665 20 N -0.132 5.132 21 C 0.215 3.785 22 N -0.392 5.392 23 C 0.303 3.697 24 O -0.449 6.449 25 C -0.229 4.229 26 C -0.067 4.067 27 C -0.147 4.147 28 C -0.061 4.061 29 C -0.166 4.166 30 C 0.074 3.926 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.306 0.694 39 H 0.150 0.850 40 H 0.188 0.812 41 H 0.206 0.794 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.758 11.186 30.428 32.536 hybrid contribution 0.496 0.073 -0.369 0.623 sum -2.262 11.258 30.059 32.178 Atomic orbital electron populations 1.21681 0.97879 0.98585 0.99963 1.21776 0.92766 0.99561 1.01544 1.18311 0.93778 0.88804 0.81378 0.99296 1.21637 0.90957 1.38120 1.06643 0.89602 1.25842 1.03232 0.94734 0.95257 1.70105 1.37041 1.38858 1.09994 0.85313 0.79263 0.77517 0.78277 1.17263 1.20981 1.22014 1.45792 1.14497 1.56596 1.17671 1.17210 0.82146 0.78271 0.86096 1.90873 1.52802 1.60945 1.41699 1.20035 0.93799 1.19948 0.99122 1.24184 0.96929 0.82896 0.82667 1.43720 1.00901 1.51586 1.17187 0.66519 1.45009 1.07066 1.48958 1.12212 1.21675 0.92775 0.86013 0.78012 1.68849 1.02963 1.32505 1.34871 1.19388 0.85331 0.78415 0.86595 1.90697 1.34232 1.58795 1.61199 1.20956 0.96975 1.08395 0.96619 1.21276 0.95935 0.92871 0.96607 1.21714 1.00693 1.00172 0.92164 1.21800 0.90171 0.92621 1.01509 1.21157 1.03132 1.01508 0.90760 1.18043 0.83395 0.95817 0.95378 0.94041 0.96588 0.93884 0.92982 0.91396 0.92962 0.75588 0.69372 0.85037 0.81225 0.79416 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.51 71.98 0.61 -5.37 16 2 C -0.12 -5.75 5.45 30.60 0.17 -5.58 16 3 C 0.28 13.95 2.24 44.25 0.10 14.05 16 4 H -0.01 -0.68 7.58 -2.39 -0.02 -0.69 16 5 C -0.54 -26.36 8.73 25.60 0.22 -26.13 16 6 H 0.09 3.70 7.74 -2.91 -0.02 3.68 16 7 C 0.01 0.45 5.29 84.66 0.45 0.90 16 8 N -0.92 -52.82 11.29 21.45 0.24 -52.58 16 9 Si 0.97 40.27 29.54 68.60 2.03 42.29 16 10 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.69 -25.64 5.01 -449.93 -2.25 -27.90 16 14 C 0.58 23.25 6.36 86.49 0.55 23.80 16 15 O -0.58 -31.76 13.98 -4.31 -0.06 -31.82 16 16 C -0.31 -8.74 6.31 -18.68 -0.12 -8.86 16 17 C 0.28 2.38 11.45 84.22 0.96 3.35 16 18 N -0.42 -2.29 7.02 -56.15 -0.39 -2.68 16 19 H 0.48 -3.25 8.62 -213.38 -1.84 -5.09 16 20 N -0.35 -6.90 3.92 -180.47 -0.71 -7.61 16 21 C 0.47 15.81 7.96 136.14 1.08 16.89 16 22 N -0.64 -29.55 10.32 -307.20 -3.17 -32.72 16 23 C 0.51 22.41 7.95 86.83 0.69 23.10 16 24 O -0.57 -29.07 17.45 -5.22 -0.09 -29.16 16 25 C -0.22 -6.47 5.88 -20.03 -0.12 -6.59 16 26 C -0.05 -1.04 9.67 22.43 0.22 -0.83 16 27 C -0.13 -1.36 10.03 22.30 0.22 -1.13 16 28 C -0.04 -0.22 10.02 22.32 0.22 0.01 16 29 C -0.15 -1.10 9.87 22.34 0.22 -0.88 16 30 C 0.17 3.39 6.66 38.80 0.26 3.65 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.01 0.83 7.84 -2.39 -0.02 0.81 16 33 H 0.04 2.03 5.64 -2.38 -0.01 2.02 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 3.77 5.95 -2.39 -0.01 3.76 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.41 10.14 7.45 -92.71 -0.69 9.45 16 38 H 0.29 -1.49 7.43 -2.91 -0.02 -1.51 16 39 H 0.13 3.18 7.81 -2.91 -0.02 3.15 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.19 -0.77 8.06 -2.91 -0.02 -0.79 16 42 H 0.18 -0.46 7.72 -2.91 -0.02 -0.48 16 Total: -1.00 -110.64 356.74 -0.08 -110.73 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -1.42 Total: 1.07 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 5.75 Total: 30.38 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.28 Total: -123.49 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -0.15 Total: -60.98 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -110.64 -0.08 -110.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273822186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.096 kcal (2) G-P(sol) polarization free energy of solvation -110.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds