Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39576 * 120.14336 * 359.72082 * 16 14 13 18 18 C 1.37957 * 119.84979 * 179.73991 * 17 16 14 19 19 C 1.38362 * 120.14637 * 0.54309 * 18 17 16 20 20 S 1.76199 * 119.85215 * 179.71747 * 19 18 17 21 21 O 1.42100 * 106.40592 * 23.55890 * 20 19 18 22 22 O 1.42098 * 106.39912 * 156.47837 * 20 19 18 23 23 N 1.65595 * 107.21743 * 270.01535 * 20 19 18 24 24 C 1.46507 * 119.99966 * 89.99899 * 23 20 19 25 25 C 1.46497 * 120.00250 * 270.00660 * 23 20 19 26 26 C 1.38357 * 120.28908 * 359.73290 * 19 18 17 27 27 C 1.37959 * 120.14821 * 359.97438 * 26 19 18 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 34 34 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 35 35 H 1.08002 * 120.07437 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.92452 * 180.27132 * 18 17 16 37 37 H 1.08998 * 109.46869 * 0.02562 * 24 23 20 38 38 H 1.09006 * 109.46924 * 120.00272 * 24 23 20 39 39 H 1.09005 * 109.47220 * 240.00098 * 24 23 20 40 40 H 1.09000 * 109.47636 * 89.99778 * 25 23 20 41 41 H 1.09001 * 109.47175 * 210.00150 * 25 23 20 42 42 H 1.09000 * 109.46739 * 329.99313 * 25 23 20 43 43 H 1.08008 * 119.92261 * 180.02562 * 26 19 18 44 44 H 1.07995 * 120.07105 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9793 3.3545 -3.7240 18 6 0.6202 3.9637 -4.9086 19 6 -0.6288 4.5442 -5.0407 20 16 -1.0767 5.3266 -6.5546 21 8 -0.2602 4.7469 -7.5628 22 8 -2.4967 5.3196 -6.6050 23 7 -0.6208 6.9144 -6.4393 24 6 0.7163 7.3261 -6.8744 25 6 -1.5543 7.9074 -5.9021 26 6 -1.5275 4.5132 -3.9891 27 6 -1.1831 3.9020 -2.8012 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4383 34 1 2.2954 2.1150 -1.9977 35 1 1.9561 2.9054 -3.6208 36 1 1.3171 3.9913 -5.7331 37 1 1.2624 6.4572 -7.2415 38 1 0.6277 8.0631 -7.6726 39 1 1.2532 7.7644 -6.0331 40 1 -1.4247 7.9813 -4.8223 41 1 -1.3561 8.8770 -6.3590 42 1 -2.5768 7.6029 -6.1254 43 1 -2.5010 4.9679 -4.0988 44 1 -1.8854 3.8789 -1.9811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273911289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -80.080444 kcal Electronic energy + Delta-G solvation = -27466.572606 eV Core-core repulsion = 23511.224481 eV Total energy + Delta-G solvation = -3955.348125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14311 -38.38368 -37.63335 -36.56671 -36.15593 -35.39369 -32.83770 -32.08574 -31.32339 -30.79382 -28.53014 -27.36016 -25.12010 -24.43354 -23.02013 -22.39714 -20.87591 -19.77955 -19.37023 -18.57493 -18.13559 -17.68497 -16.85695 -16.57250 -15.89318 -15.22179 -15.14862 -14.99625 -14.83573 -14.51980 -14.11572 -13.82798 -13.53543 -13.51624 -13.17641 -13.09135 -13.02263 -12.79326 -12.59947 -12.52812 -12.39882 -12.30582 -11.99743 -11.96053 -11.78979 -11.48094 -11.23287 -10.89200 -10.78613 -10.50667 -9.94725 -9.90075 -9.63442 -9.50609 -9.45574 -9.31586 -9.26989 -8.33591 -8.25377 -6.69541 -4.29227 -0.05143 0.31311 1.05775 2.46438 2.87208 3.35214 3.37852 3.40595 3.55042 3.68656 3.77389 3.92715 4.35619 4.37427 4.48349 4.59095 4.86538 4.93801 4.96559 5.00254 5.04641 5.15544 5.17167 5.34969 5.36851 5.37280 5.48813 5.63271 5.76789 5.85176 5.99875 6.02607 6.03635 6.10279 6.20457 6.50717 6.61095 6.72395 6.84794 6.95256 7.24101 7.28328 7.54951 8.15858 8.28725 8.56528 8.78050 9.35700 10.68650 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002581 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.001011 B =10845.881033 C =11245.387061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.043 0.957 5 C -0.633 4.633 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.883 5.883 9 Si 1.029 2.971 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.535 3.465 15 O -0.537 6.537 16 C -0.063 4.063 17 C -0.111 4.111 18 C -0.027 4.027 19 C -0.668 4.668 20 S 2.695 3.305 21 O -0.953 6.953 22 O -0.954 6.954 23 N -1.005 6.005 24 C 0.084 3.916 25 C 0.081 3.919 26 C -0.029 4.029 27 C -0.087 4.087 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.272 0.728 34 H 0.393 0.607 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 13.452 -15.767 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.061 0.939 5 C -0.670 4.670 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.514 5.514 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.337 5.337 14 C 0.319 3.681 15 O -0.417 6.417 16 C -0.066 4.066 17 C -0.130 4.130 18 C -0.047 4.047 19 C -0.755 4.755 20 S 2.785 3.215 21 O -0.943 6.943 22 O -0.944 6.944 23 N -0.844 5.844 24 C -0.061 4.061 25 C -0.064 4.064 26 C -0.048 4.048 27 C -0.107 4.107 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.162 0.838 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.942 12.750 -14.151 22.482 hybrid contribution 0.661 0.257 -1.254 1.441 sum -11.281 13.007 -15.406 23.104 Atomic orbital electron populations 1.21905 0.97378 0.99062 1.01908 1.22241 0.93712 0.99526 1.01598 1.19100 0.96006 0.88588 0.81605 0.93930 1.21948 0.89505 1.50484 1.05014 0.91897 1.25606 0.96589 0.91564 1.02079 1.70876 1.13838 1.36087 1.30627 0.84231 0.76091 0.77675 0.76442 1.20751 1.20631 1.19863 1.46293 1.14014 1.54945 1.18432 1.18216 0.83254 0.79767 0.86831 1.90756 1.50655 1.59769 1.40506 1.20717 0.94866 0.96430 0.94627 1.21549 0.99821 0.99027 0.92638 1.20829 0.93720 0.92650 0.97475 1.31052 1.03987 1.18161 1.22341 1.01945 0.73500 0.72128 0.73892 1.93584 1.70064 1.75998 1.54701 1.93572 1.28300 1.85905 1.86627 1.57263 1.23527 1.25003 1.78608 1.21629 0.81933 1.02313 1.00264 1.21637 0.93038 0.92695 0.99022 1.20874 0.97946 0.94817 0.91190 1.21435 0.95794 0.95562 0.97885 0.92920 0.93406 0.94914 0.93058 0.91631 0.91790 0.77248 0.84302 0.83863 0.89479 0.91438 0.91793 0.92374 0.90351 0.89694 0.83832 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.53 37.16 0.32 -2.58 16 2 C -0.13 -2.88 5.37 -26.73 -0.14 -3.03 16 3 C 0.25 5.78 1.84 -69.08 -0.13 5.65 16 4 H 0.04 1.07 6.12 -51.93 -0.32 0.75 16 5 C -0.63 -16.49 8.92 -34.44 -0.31 -16.79 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.88 -25.42 13.70 55.43 0.76 -24.67 16 9 Si 1.03 24.35 26.56 -169.99 -4.51 19.84 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.12 6.34 56.52 0.36 -5.77 16 13 N -0.69 -13.39 4.98 -55.88 -0.28 -13.67 16 14 C 0.53 9.91 6.38 -12.33 -0.08 9.83 16 15 O -0.54 -11.38 13.48 5.32 0.07 -11.30 16 16 C -0.06 -0.93 5.87 -104.97 -0.62 -1.55 16 17 C -0.11 -1.38 9.54 -39.19 -0.37 -1.76 16 18 C -0.03 -0.30 9.50 -39.64 -0.38 -0.68 16 19 C -0.67 -7.30 5.98 -39.49 -0.24 -7.53 16 20 S 2.70 27.42 5.68 -107.50 -0.61 26.81 16 21 O -0.95 -11.70 15.83 -57.17 -0.91 -12.60 16 22 O -0.95 -11.65 15.87 -57.17 -0.91 -12.55 16 23 N -1.00 -7.49 3.58 -129.20 -0.46 -7.95 16 24 C 0.08 0.48 10.67 59.85 0.64 1.12 16 25 C 0.08 0.46 10.70 59.85 0.64 1.10 16 26 C -0.03 -0.32 9.50 -39.64 -0.38 -0.70 16 27 C -0.09 -1.15 9.60 -39.19 -0.38 -1.52 16 28 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 29 H 0.05 0.94 5.63 -51.93 -0.29 0.65 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.50 5.77 -51.93 -0.30 1.20 16 33 H 0.27 7.72 8.73 -40.82 -0.36 7.37 16 34 H 0.39 6.72 6.56 -40.82 -0.27 6.46 16 35 H 0.14 1.53 6.41 -52.49 -0.34 1.19 16 36 H 0.14 1.26 7.60 -52.49 -0.40 0.86 16 37 H 0.09 0.52 6.91 -51.93 -0.36 0.16 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 42 H 0.08 0.50 7.02 -51.93 -0.36 0.14 16 43 H 0.14 1.27 7.60 -52.48 -0.40 0.87 16 44 H 0.15 1.87 7.65 -52.49 -0.40 1.46 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -33.65 368.43 -8.80 -42.45 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.99 Total: 5.26 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.51 Total: -17.16 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.02 Total: -46.29 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.74 Total: -36.46 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.51 Total: 19.84 kcal Atomic # 16 Polarization: 27.42 SS G_CDS: -0.61 Total: 26.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.65 -8.80 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273911289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.632 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds