Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39576 * 120.14336 * 359.72082 * 16 14 13 18 18 C 1.37957 * 119.84979 * 179.73991 * 17 16 14 19 19 C 1.38362 * 120.14637 * 0.54309 * 18 17 16 20 20 S 1.76199 * 119.85215 * 179.71747 * 19 18 17 21 21 O 1.42100 * 106.40592 * 23.55890 * 20 19 18 22 22 O 1.42098 * 106.39912 * 156.47837 * 20 19 18 23 23 N 1.65595 * 107.21743 * 270.01535 * 20 19 18 24 24 C 1.46507 * 119.99966 * 89.99899 * 23 20 19 25 25 C 1.46497 * 120.00250 * 270.00660 * 23 20 19 26 26 C 1.38357 * 120.28908 * 359.73290 * 19 18 17 27 27 C 1.37959 * 120.14821 * 359.97438 * 26 19 18 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 34 34 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 35 35 H 1.08002 * 120.07437 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.92452 * 180.27132 * 18 17 16 37 37 H 1.08998 * 109.46869 * 0.02562 * 24 23 20 38 38 H 1.09006 * 109.46924 * 120.00272 * 24 23 20 39 39 H 1.09005 * 109.47220 * 240.00098 * 24 23 20 40 40 H 1.09000 * 109.47636 * 89.99778 * 25 23 20 41 41 H 1.09001 * 109.47175 * 210.00150 * 25 23 20 42 42 H 1.09000 * 109.46739 * 329.99313 * 25 23 20 43 43 H 1.08008 * 119.92261 * 180.02562 * 26 19 18 44 44 H 1.07995 * 120.07105 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9793 3.3545 -3.7240 18 6 0.6202 3.9637 -4.9086 19 6 -0.6288 4.5442 -5.0407 20 16 -1.0767 5.3266 -6.5546 21 8 -0.2602 4.7469 -7.5628 22 8 -2.4967 5.3196 -6.6050 23 7 -0.6208 6.9144 -6.4393 24 6 0.7163 7.3261 -6.8744 25 6 -1.5543 7.9074 -5.9021 26 6 -1.5275 4.5132 -3.9891 27 6 -1.1831 3.9020 -2.8012 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4383 34 1 2.2954 2.1150 -1.9977 35 1 1.9561 2.9054 -3.6208 36 1 1.3171 3.9913 -5.7331 37 1 1.2624 6.4572 -7.2415 38 1 0.6277 8.0631 -7.6726 39 1 1.2532 7.7644 -6.0331 40 1 -1.4247 7.9813 -4.8223 41 1 -1.3561 8.8770 -6.3590 42 1 -2.5768 7.6029 -6.1254 43 1 -2.5010 4.9679 -4.0988 44 1 -1.8854 3.8789 -1.9811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273911289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -104.467791 kcal Electronic energy + Delta-G solvation = -27467.630121 eV Core-core repulsion = 23511.224481 eV Total energy + Delta-G solvation = -3956.405640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43296 -39.61342 -38.50679 -37.17049 -37.11883 -36.96625 -34.62610 -33.69328 -32.32874 -32.04694 -29.17865 -28.95659 -25.84601 -25.45811 -24.34129 -23.85924 -22.34295 -21.38984 -20.20696 -20.09666 -19.19412 -18.62958 -18.20861 -17.56559 -17.13891 -16.60089 -16.14849 -15.97424 -15.73975 -15.50795 -15.33047 -15.14003 -14.73194 -14.60262 -14.53614 -14.38749 -14.16339 -13.99025 -13.77807 -13.62886 -13.54364 -13.30367 -13.23260 -12.68322 -12.61264 -12.57426 -12.54920 -12.42016 -12.33154 -12.13125 -11.79782 -11.63630 -11.26761 -11.00262 -10.61496 -10.43576 -10.24593 -10.07344 -9.90976 -8.84287 -6.43614 -0.90994 -0.63688 0.12257 1.45886 1.47860 1.50874 1.68778 1.93630 2.24694 2.41078 2.50135 2.66790 2.90860 3.11706 3.55939 3.64621 3.74418 3.86023 4.10625 4.19073 4.26558 4.35699 4.41083 4.48794 4.52151 4.60289 4.74507 4.77991 4.78737 4.83435 4.88683 4.96671 5.01170 5.04532 5.05593 5.10413 5.15441 5.24538 5.49839 5.52524 5.52782 5.59555 5.65779 6.00262 6.50587 6.68957 7.18286 7.29873 8.53255 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002581 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.001011 B =10845.881033 C =11245.387061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.255 3.745 4 H 0.025 0.975 5 C -0.629 4.629 6 H 0.044 0.956 7 C 0.009 3.991 8 N -0.913 5.913 9 Si 1.061 2.939 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.255 1.255 13 N -0.692 5.692 14 C 0.537 3.463 15 O -0.567 6.567 16 C -0.086 4.086 17 C -0.110 4.110 18 C -0.027 4.027 19 C -0.663 4.663 20 S 2.712 3.288 21 O -0.974 6.974 22 O -0.974 6.974 23 N -1.000 6.000 24 C 0.074 3.926 25 C 0.071 3.929 26 C -0.026 4.026 27 C -0.092 4.092 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.263 0.737 34 H 0.403 0.597 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.167 0.833 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 14.754 -17.047 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C 0.150 3.850 4 H 0.043 0.957 5 C -0.666 4.666 6 H 0.062 0.938 7 C -0.194 4.194 8 N -0.546 5.546 9 Si 0.883 3.117 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.179 1.179 13 N -0.341 5.341 14 C 0.324 3.676 15 O -0.449 6.449 16 C -0.089 4.089 17 C -0.130 4.130 18 C -0.046 4.046 19 C -0.749 4.749 20 S 2.802 3.198 21 O -0.964 6.964 22 O -0.964 6.964 23 N -0.841 5.841 24 C -0.071 4.071 25 C -0.073 4.073 26 C -0.045 4.045 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.185 0.815 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.245 14.055 -15.458 24.737 hybrid contribution 1.061 -0.014 -1.009 1.464 sum -12.184 14.042 -16.466 24.835 Atomic orbital electron populations 1.21783 0.95621 1.00449 1.01350 1.22139 0.95200 0.98304 1.01168 1.18797 0.93804 0.89556 0.82820 0.95711 1.22116 0.91182 1.49125 1.04185 0.93774 1.26632 0.96693 0.91175 1.04907 1.70966 1.14991 1.38550 1.30130 0.83803 0.75885 0.78366 0.73643 1.20631 1.19861 1.17932 1.46093 1.15008 1.55381 1.17611 1.18679 0.82226 0.78860 0.87820 1.90728 1.51334 1.60823 1.41990 1.20437 0.96403 0.98526 0.93573 1.21679 0.99869 0.98925 0.92492 1.21118 0.94237 0.91768 0.97495 1.31346 1.03758 1.17295 1.22520 1.01363 0.72685 0.72582 0.73211 1.93556 1.70408 1.77072 1.55388 1.93544 1.29624 1.86511 1.86766 1.57107 1.24575 1.23889 1.78536 1.21871 0.81031 1.02717 1.01473 1.21876 0.92469 0.93094 0.99865 1.21114 0.98961 0.94141 0.90315 1.21508 0.95210 0.95688 0.98737 0.93938 0.93496 0.92491 0.92754 0.92794 0.92791 0.76068 0.83288 0.81501 0.89793 0.89733 0.90402 0.91431 0.88111 0.90073 0.81516 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.53 71.98 0.61 -4.59 16 2 C -0.13 -5.57 5.37 30.60 0.16 -5.41 16 3 C 0.25 11.77 1.84 44.25 0.08 11.85 16 4 H 0.03 1.26 6.12 -2.39 -0.01 1.24 16 5 C -0.63 -33.19 8.92 25.60 0.23 -32.96 16 6 H 0.04 2.45 7.96 -2.91 -0.02 2.42 16 7 C 0.01 0.52 5.15 84.66 0.44 0.95 16 8 N -0.91 -53.52 13.70 21.45 0.29 -53.22 16 9 Si 1.06 49.16 26.56 68.60 1.82 50.98 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.25 -10.99 6.34 99.48 0.63 -10.35 16 13 N -0.69 -26.82 4.98 -448.98 -2.24 -29.05 16 14 C 0.54 19.76 6.38 86.79 0.55 20.32 16 15 O -0.57 -24.01 13.48 -3.89 -0.05 -24.06 16 16 C -0.09 -2.48 5.87 -20.09 -0.12 -2.60 16 17 C -0.11 -2.60 9.54 22.53 0.21 -2.38 16 18 C -0.03 -0.54 9.50 22.23 0.21 -0.33 16 19 C -0.66 -13.02 5.98 22.33 0.13 -12.89 16 20 S 2.71 49.39 5.68 -56.49 -0.32 49.07 16 21 O -0.97 -22.00 15.83 -128.00 -2.03 -24.03 16 22 O -0.97 -21.94 15.87 -128.00 -2.03 -23.97 16 23 N -1.00 -12.23 3.58 -562.66 -2.02 -14.25 16 24 C 0.07 0.64 10.67 127.77 1.36 2.00 16 25 C 0.07 0.60 10.70 127.77 1.37 1.97 16 26 C -0.03 -0.54 9.50 22.23 0.21 -0.32 16 27 C -0.09 -2.31 9.60 22.53 0.22 -2.10 16 28 H 0.04 1.71 7.89 -2.39 -0.02 1.69 16 29 H 0.05 1.80 5.63 -2.39 -0.01 1.79 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.43 5.77 -2.39 -0.01 2.42 16 33 H 0.26 15.35 8.73 -92.70 -0.81 14.54 16 34 H 0.40 13.73 6.56 -92.70 -0.61 13.12 16 35 H 0.15 3.09 6.41 -2.91 -0.02 3.07 16 36 H 0.17 2.48 7.60 -2.91 -0.02 2.46 16 37 H 0.08 0.80 6.91 -2.39 -0.02 0.78 16 38 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.08 0.47 8.14 -2.38 -0.02 0.46 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16 42 H 0.08 0.77 7.02 -2.39 -0.02 0.75 16 43 H 0.17 2.55 7.60 -2.91 -0.02 2.53 16 44 H 0.15 3.62 7.65 -2.91 -0.02 3.60 16 Total: -1.00 -72.21 368.43 -0.58 -72.79 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.31 Total: 22.22 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.68 Total: -26.48 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -3.96 Total: -96.52 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -4.11 Total: -72.06 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.82 Total: 50.98 kcal Atomic # 16 Polarization: 49.39 SS G_CDS: -0.32 Total: 49.07 kcal Total: -72.21 -0.58 -72.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273911289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.674 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds