Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09004 * 109.47167 * 304.99879 * 3 2 1 5 5 C 1.52997 * 109.47067 * 184.99932 * 3 2 1 6 6 N 1.46503 * 109.47378 * 64.99724 * 3 2 1 7 7 S 1.65599 * 119.99905 * 215.00386 * 6 3 2 8 8 O 1.42100 * 104.27692 * 181.07204 * 7 6 3 9 9 O 1.42100 * 104.27498 * 308.92691 * 7 6 3 10 10 C 1.81397 * 104.45445 * 64.99826 * 7 6 3 11 11 C 1.50688 * 109.47487 * 179.97438 * 10 7 6 12 12 C 1.38346 * 119.95989 * 269.72912 * 11 10 7 13 13 C 1.38318 * 120.16664 * 179.72421 * 12 11 10 14 14 C 1.38070 * 120.08467 * 0.54659 * 13 12 11 15 15 C 1.39011 * 119.91790 * 359.72625 * 14 13 12 16 16 N 1.39528 * 120.08838 * 180.02562 * 15 14 13 17 17 C 1.34782 * 119.99879 * 324.87351 * 16 15 14 18 18 O 1.21736 * 119.99833 * 4.59962 * 17 16 15 19 19 C 1.46176 * 119.99750 * 184.60706 * 17 16 15 20 20 H 1.07996 * 119.99878 * 359.97438 * 19 17 16 21 21 C 1.40124 * 119.99581 * 179.97438 * 19 17 16 22 22 N 1.30636 * 120.00284 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99697 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47296 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47111 * 120.00128 * 23 21 19 26 26 H 1.48502 * 109.47458 * 240.00363 * 23 21 19 27 27 C 1.38042 * 119.96011 * 89.99854 * 11 10 7 28 28 H 1.08997 * 109.47076 * 300.00437 * 1 2 3 29 29 H 1.08997 * 109.46784 * 60.00598 * 1 2 3 30 30 H 1.09002 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47076 * 239.99563 * 2 1 3 32 32 H 1.09006 * 109.46900 * 119.99596 * 2 1 3 33 33 H 1.08999 * 109.47650 * 59.99708 * 5 3 2 34 34 H 1.08995 * 109.47453 * 299.99550 * 5 3 2 35 35 H 1.08997 * 109.47176 * 179.97438 * 5 3 2 36 36 H 0.96998 * 119.99551 * 35.00340 * 6 3 2 37 37 H 1.09007 * 109.46895 * 300.00541 * 10 7 6 38 38 H 1.09002 * 109.46847 * 59.99357 * 10 7 6 39 39 H 1.07998 * 119.91870 * 359.97438 * 12 11 10 40 40 H 1.08006 * 119.95472 * 180.27176 * 13 12 11 41 41 H 1.07997 * 120.04537 * 179.70389 * 14 13 12 42 42 H 0.97002 * 120.00307 * 144.86628 * 16 15 14 43 43 H 0.96993 * 119.99990 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.03961 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0975 1.2518 7 16 1.2557 3.7053 1.2566 8 8 0.9662 3.9907 2.6182 9 8 2.3410 4.3360 0.5906 10 6 -0.2512 3.8028 0.2515 11 6 -0.7162 5.2344 0.1808 12 6 -1.5998 5.7214 1.1274 13 6 -2.0250 7.0363 1.0699 14 6 -1.5774 7.8649 0.0603 15 6 -0.6939 7.3778 -0.8960 16 7 -0.2389 8.2122 -1.9175 17 6 -1.0585 9.1456 -2.4406 18 8 -2.1664 9.3174 -1.9663 19 6 -0.6170 9.9514 -3.5775 20 1 0.3660 9.7991 -3.9980 21 6 -1.4693 10.9214 -4.1216 22 7 -2.6582 11.1059 -3.6126 23 14 -0.9050 11.9517 -5.5740 24 1 0.4719 11.5509 -5.9599 25 1 -1.8229 11.7350 -6.7210 26 1 -0.9154 13.3877 -5.1961 27 6 -0.2643 6.0568 -0.8316 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8533 0.9569 -1.0570 34 1 3.9995 0.9053 0.7161 35 1 3.9281 2.4719 -0.1262 36 1 1.6282 1.5895 2.0777 37 1 -0.0413 3.4384 -0.7542 38 1 -1.0305 3.1899 0.7046 39 1 -1.9554 5.0743 1.9156 40 1 -2.7115 7.4141 1.8133 41 1 -1.9135 8.8902 0.0133 42 1 0.6673 8.1206 -2.2512 43 1 -3.2480 11.7777 -3.9891 44 1 0.4224 5.6749 -1.5725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274775361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = -99.386473 kcal Electronic energy + Delta-G solvation = -27226.457047 eV Core-core repulsion = 23270.271749 eV Total energy + Delta-G solvation = -3956.185298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.38611 -37.81926 -37.20592 -37.02358 -35.95214 -33.78606 -32.52032 -32.29616 -32.07602 -29.79963 -29.23624 -27.19110 -26.21019 -24.09281 -22.14600 -21.88858 -21.48081 -19.94895 -19.27851 -17.89492 -17.61343 -16.69975 -16.57192 -15.98414 -15.64071 -15.54724 -15.28782 -14.73657 -14.52633 -14.32892 -14.08365 -13.80002 -13.62023 -13.17561 -13.03220 -12.91427 -12.65664 -12.45387 -12.29784 -12.11511 -12.08927 -12.01766 -11.98070 -11.77223 -11.42017 -11.34422 -11.33154 -11.17530 -11.08349 -10.93653 -10.72897 -10.63015 -10.33124 -9.84200 -9.35126 -8.93415 -8.39956 -7.76480 -7.19342 -6.38156 -4.85345 0.08087 1.80819 1.89284 2.60148 3.04360 3.13026 3.17536 3.66676 3.95719 4.05939 4.15960 4.22571 4.37533 4.48217 4.56826 4.60917 4.65257 4.75980 4.91162 5.09065 5.21827 5.25932 5.35187 5.40092 5.51920 5.53706 5.56116 5.58581 5.60270 5.83322 5.87713 5.92134 6.01738 6.04057 6.23213 6.38273 6.70388 6.73225 6.99959 7.03174 7.24703 7.31562 7.68990 8.00823 8.13403 8.82060 9.17274 10.34018 10.52819 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002538 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.510026 B =11028.285955 C =11691.228074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.130 4.130 3 C 0.147 3.853 4 H 0.083 0.917 5 C -0.174 4.174 6 N -1.118 6.118 7 S 2.604 3.396 8 O -0.955 6.955 9 O -0.947 6.947 10 C -0.569 4.569 11 C -0.085 4.085 12 C -0.148 4.148 13 C -0.101 4.101 14 C -0.116 4.116 15 C 0.193 3.807 16 N -0.700 5.700 17 C 0.543 3.457 18 O -0.560 6.560 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.086 3.914 22 N -0.759 5.759 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.159 4.159 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.148 0.852 42 H 0.395 0.605 43 H 0.272 0.728 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -21.396 6.718 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.169 4.169 3 C 0.040 3.960 4 H 0.101 0.899 5 C -0.232 4.232 6 N -0.876 5.876 7 S 2.698 3.302 8 O -0.945 6.945 9 O -0.937 6.937 10 C -0.697 4.697 11 C -0.088 4.088 12 C -0.169 4.169 13 C -0.120 4.120 14 C -0.138 4.138 15 C 0.094 3.906 16 N -0.343 5.343 17 C 0.350 3.650 18 O -0.442 6.442 19 C -0.573 4.573 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.387 5.387 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.182 4.182 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.229 0.771 43 H 0.082 0.918 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.986 -20.328 7.215 22.674 hybrid contribution 0.087 -0.248 -1.036 1.068 sum 7.072 -20.577 6.179 22.619 Atomic orbital electron populations 1.21851 0.95413 1.02118 1.02342 1.21861 0.96491 0.95434 1.03091 1.20836 0.95693 0.94300 0.85141 0.89876 1.22331 0.94908 1.03900 1.02109 1.55877 1.84585 1.31081 1.16101 1.05381 0.76762 0.72703 0.75345 1.93591 1.86139 1.82650 1.32131 1.93597 1.49197 1.73785 1.77141 1.29467 1.21472 1.02277 1.16476 1.18423 1.01203 0.90956 0.98188 1.20844 0.99777 0.96636 0.99630 1.21019 0.99465 0.93295 0.98173 1.21673 0.98091 1.02099 0.91914 1.17927 0.94954 0.89207 0.88507 1.44154 1.16775 1.36878 1.36476 1.18417 0.83883 0.78716 0.84012 1.90612 1.21290 1.68881 1.63443 1.20890 1.02511 1.19239 1.14632 0.90845 1.25754 0.94109 0.96384 0.97289 1.69989 1.06261 1.26794 1.35644 0.86214 0.79700 0.79559 0.80761 1.18589 1.20010 1.19960 1.20823 1.04874 0.92514 0.99964 0.92342 0.92357 0.92396 0.90503 0.91167 0.91573 0.92164 0.90687 0.75085 0.84681 0.84389 0.86303 0.85920 0.83451 0.77098 0.91752 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.80 37.16 0.36 -0.45 16 2 C -0.13 -0.63 5.53 -26.73 -0.15 -0.78 16 3 C 0.15 0.99 2.68 -67.93 -0.18 0.81 16 4 H 0.08 0.51 7.15 -51.93 -0.37 0.14 16 5 C -0.17 -1.25 9.52 37.16 0.35 -0.90 16 6 N -1.12 -8.68 4.81 -4.89 -0.02 -8.70 16 7 S 2.60 30.71 5.36 -107.50 -0.58 30.13 16 8 O -0.95 -14.19 18.08 -57.54 -1.04 -15.23 16 9 O -0.95 -14.25 17.11 -57.54 -0.98 -15.24 16 10 C -0.57 -6.07 6.09 36.00 0.22 -5.85 16 11 C -0.08 -1.32 5.14 -104.66 -0.54 -1.86 16 12 C -0.15 -2.35 9.70 -39.51 -0.38 -2.73 16 13 C -0.10 -1.77 10.04 -39.61 -0.40 -2.17 16 14 C -0.12 -2.47 8.69 -39.36 -0.34 -2.82 16 15 C 0.19 4.08 6.30 -83.77 -0.53 3.55 16 16 N -0.70 -15.77 5.32 -11.19 -0.06 -15.83 16 17 C 0.54 14.90 7.58 -13.07 -0.10 14.80 16 18 O -0.56 -17.16 12.44 5.16 0.06 -17.09 16 19 C -0.54 -14.52 9.54 -35.69 -0.34 -14.86 16 20 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 21 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 22 N -0.76 -21.79 11.82 55.55 0.66 -21.13 16 23 Si 0.91 19.36 29.56 -169.99 -5.02 14.33 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 C -0.16 -2.81 9.62 -39.35 -0.38 -3.19 16 28 H 0.06 0.29 7.75 -51.93 -0.40 -0.11 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.71 7.42 -51.93 -0.39 0.33 16 36 H 0.42 2.50 8.80 -34.47 -0.30 2.20 16 37 H 0.13 1.13 7.39 -51.92 -0.38 0.74 16 38 H 0.14 1.10 8.08 -51.92 -0.42 0.68 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.15 3.53 6.22 -52.49 -0.33 3.21 16 42 H 0.40 7.69 8.80 -40.82 -0.36 7.33 16 43 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 44 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -36.80 382.32 -10.02 -46.82 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.30 Total: 10.43 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.49 Total: -14.24 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.57 Total: -45.67 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.96 Total: -47.57 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 30.71 SS G_CDS: -0.58 Total: 30.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.80 -10.02 -46.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274775361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.566 kcal (2) G-P(sol) polarization free energy of solvation -36.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds