Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09004 * 109.47167 * 304.99879 * 3 2 1 5 5 C 1.52997 * 109.47067 * 184.99932 * 3 2 1 6 6 N 1.46503 * 109.47378 * 64.99724 * 3 2 1 7 7 S 1.65599 * 119.99905 * 215.00386 * 6 3 2 8 8 O 1.42100 * 104.27692 * 181.07204 * 7 6 3 9 9 O 1.42100 * 104.27498 * 308.92691 * 7 6 3 10 10 C 1.81397 * 104.45445 * 64.99826 * 7 6 3 11 11 C 1.50688 * 109.47487 * 179.97438 * 10 7 6 12 12 C 1.38346 * 119.95989 * 269.72912 * 11 10 7 13 13 C 1.38318 * 120.16664 * 179.72421 * 12 11 10 14 14 C 1.38070 * 120.08467 * 0.54659 * 13 12 11 15 15 C 1.39011 * 119.91790 * 359.72625 * 14 13 12 16 16 N 1.39528 * 120.08838 * 180.02562 * 15 14 13 17 17 C 1.34782 * 119.99879 * 324.87351 * 16 15 14 18 18 O 1.21736 * 119.99833 * 4.59962 * 17 16 15 19 19 C 1.46176 * 119.99750 * 184.60706 * 17 16 15 20 20 H 1.07996 * 119.99878 * 359.97438 * 19 17 16 21 21 C 1.40124 * 119.99581 * 179.97438 * 19 17 16 22 22 N 1.30636 * 120.00284 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99697 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47296 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47111 * 120.00128 * 23 21 19 26 26 H 1.48502 * 109.47458 * 240.00363 * 23 21 19 27 27 C 1.38042 * 119.96011 * 89.99854 * 11 10 7 28 28 H 1.08997 * 109.47076 * 300.00437 * 1 2 3 29 29 H 1.08997 * 109.46784 * 60.00598 * 1 2 3 30 30 H 1.09002 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47076 * 239.99563 * 2 1 3 32 32 H 1.09006 * 109.46900 * 119.99596 * 2 1 3 33 33 H 1.08999 * 109.47650 * 59.99708 * 5 3 2 34 34 H 1.08995 * 109.47453 * 299.99550 * 5 3 2 35 35 H 1.08997 * 109.47176 * 179.97438 * 5 3 2 36 36 H 0.96998 * 119.99551 * 35.00340 * 6 3 2 37 37 H 1.09007 * 109.46895 * 300.00541 * 10 7 6 38 38 H 1.09002 * 109.46847 * 59.99357 * 10 7 6 39 39 H 1.07998 * 119.91870 * 359.97438 * 12 11 10 40 40 H 1.08006 * 119.95472 * 180.27176 * 13 12 11 41 41 H 1.07997 * 120.04537 * 179.70389 * 14 13 12 42 42 H 0.97002 * 120.00307 * 144.86628 * 16 15 14 43 43 H 0.96993 * 119.99990 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.03961 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0975 1.2518 7 16 1.2557 3.7053 1.2566 8 8 0.9662 3.9907 2.6182 9 8 2.3410 4.3360 0.5906 10 6 -0.2512 3.8028 0.2515 11 6 -0.7162 5.2344 0.1808 12 6 -1.5998 5.7214 1.1274 13 6 -2.0250 7.0363 1.0699 14 6 -1.5774 7.8649 0.0603 15 6 -0.6939 7.3778 -0.8960 16 7 -0.2389 8.2122 -1.9175 17 6 -1.0585 9.1456 -2.4406 18 8 -2.1664 9.3174 -1.9663 19 6 -0.6170 9.9514 -3.5775 20 1 0.3660 9.7991 -3.9980 21 6 -1.4693 10.9214 -4.1216 22 7 -2.6582 11.1059 -3.6126 23 14 -0.9050 11.9517 -5.5740 24 1 0.4719 11.5509 -5.9599 25 1 -1.8229 11.7350 -6.7210 26 1 -0.9154 13.3877 -5.1961 27 6 -0.2643 6.0568 -0.8316 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8533 0.9569 -1.0570 34 1 3.9995 0.9053 0.7161 35 1 3.9281 2.4719 -0.1262 36 1 1.6282 1.5895 2.0777 37 1 -0.0413 3.4384 -0.7542 38 1 -1.0305 3.1899 0.7046 39 1 -1.9554 5.0743 1.9156 40 1 -2.7115 7.4141 1.8133 41 1 -1.9135 8.8902 0.0133 42 1 0.6673 8.1206 -2.2512 43 1 -3.2480 11.7777 -3.9891 44 1 0.4224 5.6749 -1.5725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274775361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -127.536680 kcal Electronic energy + Delta-G solvation = -27227.677732 eV Core-core repulsion = 23270.271749 eV Total energy + Delta-G solvation = -3957.405982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96128 -38.99294 -38.46595 -37.94416 -36.98981 -35.55796 -34.56459 -33.63186 -32.57828 -30.84787 -30.32840 -28.58057 -28.00341 -24.52635 -23.77721 -23.31193 -21.99950 -21.44383 -20.38386 -19.51119 -18.75812 -18.01932 -17.61647 -17.35601 -17.11688 -16.91402 -16.42758 -15.99974 -15.73653 -15.21653 -14.97441 -14.87737 -14.82696 -14.46079 -14.23932 -14.19011 -13.69219 -13.63981 -13.59481 -13.22014 -13.17687 -13.09924 -12.84879 -12.82198 -12.79495 -12.63840 -12.54042 -12.34884 -12.25322 -12.00452 -11.96765 -11.68425 -11.51584 -11.10042 -10.84880 -10.48050 -9.96255 -9.65741 -8.86386 -8.38880 -6.96888 -0.87326 0.41494 0.44689 1.38466 1.39425 1.57474 1.79638 2.19652 2.33915 2.72617 2.77954 2.94055 3.21483 3.39592 3.54264 3.77571 3.86015 4.09463 4.14340 4.21385 4.28071 4.40122 4.42251 4.51777 4.59892 4.63809 4.77758 4.78776 4.87601 5.01385 5.06429 5.12501 5.24037 5.26863 5.36921 5.43722 5.46457 5.47506 5.54059 5.55491 5.75168 5.84944 6.13277 6.17148 6.34126 6.75973 7.29422 8.31822 8.54549 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002538 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.510026 B =11028.285955 C =11691.228074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.124 4.124 3 C 0.139 3.861 4 H 0.092 0.908 5 C -0.177 4.177 6 N -1.102 6.102 7 S 2.616 3.384 8 O -0.989 6.989 9 O -0.986 6.986 10 C -0.564 4.564 11 C -0.081 4.081 12 C -0.143 4.143 13 C -0.103 4.103 14 C -0.150 4.150 15 C 0.156 3.844 16 N -0.695 5.695 17 C 0.529 3.471 18 O -0.605 6.605 19 C -0.564 4.564 20 H 0.092 0.908 21 C 0.029 3.971 22 N -0.812 5.812 23 Si 1.002 2.998 24 H -0.246 1.246 25 H -0.267 1.267 26 H -0.268 1.268 27 C -0.159 4.159 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.425 0.575 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.105 0.895 42 H 0.407 0.593 43 H 0.278 0.722 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -24.357 6.140 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.163 4.163 3 C 0.033 3.967 4 H 0.110 0.890 5 C -0.236 4.236 6 N -0.864 5.864 7 S 2.711 3.289 8 O -0.979 6.979 9 O -0.975 6.975 10 C -0.693 4.693 11 C -0.083 4.083 12 C -0.162 4.162 13 C -0.121 4.121 14 C -0.172 4.172 15 C 0.059 3.941 16 N -0.339 5.339 17 C 0.336 3.664 18 O -0.490 6.490 19 C -0.600 4.600 20 H 0.111 0.889 21 C -0.187 4.187 22 N -0.441 5.441 23 Si 0.821 3.179 24 H -0.169 1.169 25 H -0.192 1.192 26 H -0.193 1.193 27 C -0.181 4.181 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.262 0.738 37 H 0.183 0.817 38 H 0.194 0.806 39 H 0.176 0.824 40 H 0.162 0.838 41 H 0.124 0.876 42 H 0.243 0.757 43 H 0.088 0.912 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.884 -23.337 6.682 25.523 hybrid contribution -0.156 0.472 -0.730 0.883 sum 7.728 -22.865 5.953 24.859 Atomic orbital electron populations 1.21916 0.95368 1.02541 1.02498 1.21826 0.96462 0.93941 1.04035 1.21088 0.95423 0.95597 0.84630 0.89002 1.22360 0.95462 1.02434 1.03338 1.55485 1.84084 1.29550 1.17280 1.04714 0.76544 0.73318 0.74326 1.93547 1.86555 1.83739 1.34042 1.93562 1.51029 1.75352 1.77589 1.29510 1.21639 0.99565 1.18576 1.18878 0.99764 0.93124 0.96574 1.21354 0.98704 0.96028 1.00161 1.21280 0.99448 0.93958 0.97415 1.21482 1.00165 1.01104 0.94411 1.18217 0.96590 0.90662 0.88662 1.43714 1.16812 1.36471 1.36897 1.18764 0.83851 0.79475 0.84308 1.90574 1.23257 1.70453 1.64739 1.21425 1.03654 1.19908 1.15006 0.88945 1.27014 0.93781 0.97405 1.00510 1.70144 1.08069 1.28030 1.37888 0.84899 0.79799 0.77195 0.75997 1.16911 1.19175 1.19286 1.21090 1.04677 0.91168 1.01130 0.92171 0.92210 0.91977 0.89359 0.90497 0.89948 0.91583 0.93376 0.73816 0.81682 0.80595 0.82399 0.83758 0.87643 0.75716 0.91188 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 9.80 71.98 0.71 -0.35 16 2 C -0.12 -0.75 5.53 30.59 0.17 -0.58 16 3 C 0.14 1.43 2.68 44.99 0.12 1.55 16 4 H 0.09 0.80 7.15 -2.38 -0.02 0.78 16 5 C -0.18 -2.19 9.52 71.98 0.69 -1.50 16 6 N -1.10 -13.94 4.81 -169.39 -0.82 -14.75 16 7 S 2.62 55.49 5.36 -56.49 -0.30 55.18 16 8 O -0.99 -27.44 18.08 -127.65 -2.31 -29.75 16 9 O -0.99 -28.53 17.11 -127.65 -2.18 -30.72 16 10 C -0.56 -9.76 6.09 71.23 0.43 -9.33 16 11 C -0.08 -2.31 5.14 -19.89 -0.10 -2.41 16 12 C -0.14 -4.18 9.70 22.31 0.22 -3.96 16 13 C -0.10 -3.62 10.04 22.25 0.22 -3.40 16 14 C -0.15 -6.76 8.69 22.42 0.19 -6.56 16 15 C 0.16 6.83 6.30 38.30 0.24 7.07 16 16 N -0.69 -32.78 5.32 -307.53 -1.63 -34.42 16 17 C 0.53 30.62 7.58 86.30 0.65 31.27 16 18 O -0.60 -39.59 12.44 -4.46 -0.06 -39.64 16 19 C -0.56 -31.43 9.54 24.79 0.24 -31.19 16 20 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 21 C 0.03 1.59 5.50 85.33 0.47 2.06 16 22 N -0.81 -48.60 11.82 21.85 0.26 -48.34 16 23 Si 1.00 39.97 29.56 68.60 2.03 42.00 16 24 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 25 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 27 C -0.16 -5.47 9.62 22.42 0.22 -5.25 16 28 H 0.06 0.36 7.75 -2.39 -0.02 0.34 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.87 7.42 -2.39 -0.02 0.85 16 36 H 0.43 3.88 8.80 -96.75 -0.85 3.03 16 37 H 0.17 1.96 7.39 -2.39 -0.02 1.94 16 38 H 0.18 1.79 8.08 -2.39 -0.02 1.77 16 39 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.11 5.59 6.22 -2.91 -0.02 5.57 16 42 H 0.41 16.42 8.80 -92.71 -0.82 15.60 16 43 H 0.28 14.97 8.29 -92.71 -0.77 14.20 16 44 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -86.01 382.32 -1.18 -87.20 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.63 Total: 35.81 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.46 Total: -22.57 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -2.19 Total: -97.51 kcal Atomic # 8 Polarization: -95.56 SS G_CDS: -4.55 Total: -100.11 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: 55.49 SS G_CDS: -0.30 Total: 55.18 kcal Total: -86.01 -1.18 -87.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274775361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.339 kcal (2) G-P(sol) polarization free energy of solvation -86.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds