Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.53005 * 109.47330 * 240.00273 * 2 1 3 5 5 C 1.53000 * 109.47251 * 120.00164 * 2 1 3 6 6 C 1.50700 * 109.47128 * 59.99918 * 5 2 1 7 7 O 1.21277 * 119.99609 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00141 * 179.97438 * 6 5 2 9 9 N 1.40097 * 120.00162 * 179.97438 * 8 6 5 10 10 S 1.65601 * 119.99665 * 123.92570 * 9 8 6 11 11 O 1.42092 * 106.40592 * 301.19285 * 10 9 8 12 12 O 1.42107 * 106.39949 * 168.26930 * 10 9 8 13 13 C 1.76202 * 107.21609 * 54.73361 * 10 9 8 14 14 C 1.37640 * 120.12652 * 246.68814 * 13 10 9 15 15 C 1.38620 * 120.24482 * 180.32056 * 14 13 10 16 16 C 1.38656 * 120.50177 * 359.67227 * 15 14 13 17 17 C 1.37604 * 120.24757 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12820 * 66.38705 * 13 10 9 19 19 C 1.41402 * 120.24688 * 359.97438 * 18 13 10 20 20 H 1.08003 * 119.99381 * 338.86380 * 19 18 13 21 21 C 1.39942 * 120.00482 * 158.85778 * 19 18 13 22 22 N 1.30820 * 119.99663 * 330.54184 * 21 19 18 23 23 Si 1.86794 * 119.99852 * 150.53622 * 21 19 18 24 24 H 1.48510 * 109.47190 * 265.01180 * 23 21 19 25 25 H 1.48498 * 109.47414 * 25.01442 * 23 21 19 26 26 H 1.48502 * 109.47091 * 145.01436 * 23 21 19 27 27 H 1.08999 * 109.47340 * 299.99842 * 1 2 3 28 28 H 1.09004 * 109.46912 * 60.00096 * 1 2 3 29 29 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47724 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47462 * 300.00556 * 3 2 1 32 32 H 1.09005 * 109.47150 * 60.00168 * 3 2 1 33 33 H 1.09005 * 109.46500 * 300.00205 * 4 2 1 34 34 H 1.08996 * 109.46617 * 59.99870 * 4 2 1 35 35 H 1.08996 * 109.47269 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46943 * 300.00236 * 5 2 1 37 37 H 1.08996 * 109.47086 * 180.02562 * 5 2 1 38 38 H 0.97002 * 119.99685 * 0.02562 * 8 6 5 39 39 H 0.96993 * 120.00030 * 303.93431 * 9 8 6 40 40 H 1.07993 * 119.87788 * 0.02562 * 14 13 10 41 41 H 1.07993 * 119.74746 * 179.69845 * 15 14 13 42 42 H 1.07997 * 119.87445 * 180.02562 * 16 15 14 43 43 H 1.08005 * 120.12639 * 180.02562 * 17 16 15 44 44 H 0.96999 * 119.99798 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2492 7 8 0.8408 -2.5388 0.3393 8 7 1.8637 -2.9722 2.2597 9 7 1.3963 -4.2929 2.2600 10 16 2.4690 -5.5508 2.3573 11 8 3.3393 -5.4233 1.2414 12 8 1.6978 -6.7168 2.6124 13 6 3.4568 -5.2839 3.7918 14 6 4.7998 -5.0102 3.6646 15 6 5.5806 -4.8064 4.7917 16 6 5.0187 -4.8689 6.0578 17 6 3.6771 -5.1350 6.2084 18 6 2.8747 -5.3436 5.0713 19 6 1.4947 -5.6172 5.2139 20 1 0.8222 -5.4470 4.3861 21 6 1.0005 -6.1085 6.4274 22 7 1.7652 -6.8393 7.1972 23 14 -0.7510 -5.7206 6.9481 24 1 -0.7513 -4.5307 7.8367 25 1 -1.5746 -5.4400 5.7447 26 1 -1.3196 -6.8828 7.6770 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7209 1.2494 38 1 2.4214 -2.6549 2.9872 39 1 0.4445 -4.4705 2.2030 40 1 5.2477 -4.9587 2.6833 41 1 6.6344 -4.5970 4.6828 42 1 5.6364 -4.7081 6.9290 43 1 3.2414 -5.1828 7.1955 44 1 1.4227 -7.1795 8.0386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279937939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -79.718389 kcal Electronic energy + Delta-G solvation = -28442.407434 eV Core-core repulsion = 24487.075009 eV Total energy + Delta-G solvation = -3955.332425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02148 -37.71206 -36.87110 -36.32649 -35.07265 -34.96852 -34.10089 -30.69398 -30.37161 -29.70450 -27.52254 -27.20429 -27.14672 -25.67165 -21.85279 -21.35080 -21.06177 -19.47922 -18.69667 -17.84434 -17.58728 -17.25010 -16.69160 -15.94549 -15.53129 -15.17395 -14.77834 -14.52755 -14.39974 -14.38850 -14.22958 -13.45420 -13.28333 -12.89020 -12.86825 -12.32893 -12.20002 -12.06380 -11.89819 -11.77383 -11.64492 -11.47050 -11.33555 -11.28328 -11.19901 -11.16927 -11.09756 -10.83064 -10.81891 -10.68401 -10.65608 -10.51437 -10.00181 -9.50518 -9.41848 -9.27499 -8.58393 -8.18100 -7.85587 -7.33142 -4.88248 1.15224 2.21946 2.59226 2.72000 2.77734 2.86593 2.91637 3.01377 3.63194 4.12173 4.23178 4.56039 4.58848 4.78224 4.81525 5.15528 5.19373 5.40388 5.44310 5.50410 5.50730 5.58286 5.74116 5.84633 5.89322 5.96573 6.07407 6.10260 6.11472 6.19122 6.32120 6.32717 6.50987 6.60351 6.63750 6.78726 6.94783 7.16267 7.28014 7.38879 7.47776 7.61616 7.70284 7.75120 8.13973 8.29891 8.47571 8.50885 9.61720 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.004054 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.986628 B = 6905.248256 C = 7583.654397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.157 4.157 5 C -0.128 4.128 6 C 0.515 3.485 7 O -0.523 6.523 8 N -0.501 5.501 9 N -0.910 5.910 10 S 2.696 3.304 11 O -0.985 6.985 12 O -0.949 6.949 13 C -0.789 4.789 14 C 0.007 3.993 15 C -0.258 4.258 16 C -0.069 4.069 17 C -0.169 4.169 18 C 0.181 3.819 19 C -0.441 4.441 20 H 0.092 0.908 21 C 0.087 3.913 22 N -0.744 5.744 23 Si 0.908 3.092 24 H -0.262 1.262 25 H -0.253 1.253 26 H -0.271 1.271 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.420 0.580 39 H 0.418 0.582 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 12.626 -3.867 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.050 4.050 3 C -0.199 4.199 4 C -0.214 4.214 5 C -0.170 4.170 6 C 0.301 3.699 7 O -0.398 6.398 8 N -0.253 5.253 9 N -0.758 5.758 10 S 2.793 3.207 11 O -0.974 6.974 12 O -0.938 6.938 13 C -0.886 4.886 14 C -0.013 4.013 15 C -0.279 4.279 16 C -0.088 4.088 17 C -0.189 4.189 18 C 0.176 3.824 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.139 4.139 22 N -0.364 5.364 23 Si 0.731 3.269 24 H -0.187 1.187 25 H -0.176 1.176 26 H -0.196 1.196 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.262 0.738 39 H 0.255 0.745 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.365 11.472 -4.938 12.564 hybrid contribution -0.514 0.417 1.561 1.695 sum -1.880 11.889 -3.377 12.502 Atomic orbital electron populations 1.22129 0.94125 1.04237 1.00708 1.20263 0.96378 0.94406 0.93995 1.21895 1.00974 0.95228 1.01790 1.22143 1.00260 1.03048 0.95921 1.21777 1.03005 0.91356 1.00835 1.21063 0.80626 0.87297 0.80953 1.90565 1.37691 1.76907 1.34645 1.44478 1.53281 1.01960 1.25556 1.55797 1.21053 1.05560 1.93340 1.01564 0.72955 0.71942 0.74197 1.93463 1.66286 1.85964 1.51736 1.93597 1.70831 1.42836 1.86494 1.29505 1.06854 1.38049 1.14153 1.20248 0.91889 0.91557 0.97603 1.20434 0.98238 1.16386 0.92813 1.20851 0.95136 0.96919 0.95889 1.21293 0.93343 1.05708 0.98576 1.16907 0.91988 0.84110 0.89371 1.19965 0.93267 1.34855 0.98669 0.88970 1.26033 1.01039 0.91483 0.95346 1.69882 1.38879 1.17542 1.10080 0.86259 0.81019 0.79472 0.80186 1.18675 1.17580 1.19558 0.93505 0.93184 0.89657 0.92568 0.92456 0.92672 0.89525 0.93204 0.93307 0.88440 0.88249 0.73810 0.74502 0.87390 0.88680 0.88802 0.86714 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.18 37.16 0.30 -1.40 16 2 C -0.05 -0.52 0.77 -154.51 -0.12 -0.64 16 3 C -0.14 -1.16 8.47 37.16 0.31 -0.84 16 4 C -0.16 -1.85 8.18 37.16 0.30 -1.55 16 5 C -0.13 -1.32 4.77 -27.88 -0.13 -1.46 16 6 C 0.51 7.44 7.36 -10.98 -0.08 7.36 16 7 O -0.52 -8.98 11.68 5.56 0.06 -8.92 16 8 N -0.50 -7.62 6.26 31.22 0.20 -7.42 16 9 N -0.91 -16.36 5.57 60.35 0.34 -16.02 16 10 S 2.70 58.22 5.16 -107.50 -0.55 57.67 16 11 O -0.98 -22.77 16.97 -57.17 -0.97 -23.74 16 12 O -0.95 -23.23 16.30 -57.17 -0.93 -24.16 16 13 C -0.79 -17.73 5.94 -38.87 -0.23 -17.96 16 14 C 0.01 0.15 9.54 -39.66 -0.38 -0.23 16 15 C -0.26 -5.27 10.05 -39.29 -0.39 -5.66 16 16 C -0.07 -1.44 10.02 -39.66 -0.40 -1.84 16 17 C -0.17 -3.89 8.77 -38.87 -0.34 -4.23 16 18 C 0.18 4.30 5.59 -106.82 -0.60 3.71 16 19 C -0.44 -10.43 7.76 -37.74 -0.29 -10.73 16 20 H 0.09 2.08 5.76 -52.48 -0.30 1.78 16 21 C 0.09 1.96 4.88 -17.34 -0.08 1.88 16 22 N -0.74 -17.20 11.49 55.55 0.64 -16.56 16 23 Si 0.91 16.67 29.65 -169.99 -5.04 11.63 16 24 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 25 H -0.25 -4.63 7.11 56.52 0.40 -4.23 16 26 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.16 5.51 -51.93 -0.29 0.87 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 1.27 5.51 -51.93 -0.29 0.99 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.42 5.52 8.83 -182.60 -1.61 3.90 16 39 H 0.42 6.99 8.96 -176.26 -1.58 5.41 16 40 H 0.11 2.15 7.32 -52.49 -0.38 1.77 16 41 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.11 2.64 6.35 -52.48 -0.33 2.31 16 44 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -30.70 370.60 -11.37 -42.08 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.57 Total: 13.45 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: -2.13 Total: -33.60 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 1.17 Total: -40.01 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.84 Total: -56.81 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.04 Total: 11.63 kcal Atomic # 16 Polarization: 58.22 SS G_CDS: -0.55 Total: 57.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.70 -11.37 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279937939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.642 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds