Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47359 * 2 1 4 4 H 1.08995 * 109.47572 * 54.99306 * 3 2 1 5 5 N 1.46499 * 109.46763 * 294.99391 * 3 2 1 6 6 C 1.34782 * 119.99701 * 84.99981 * 5 3 2 7 7 O 1.21277 * 120.00186 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99936 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47173 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47173 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99892 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00007 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99900 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47215 * 90.00418 * 14 12 10 16 16 H 1.48503 * 109.46865 * 209.99936 * 14 12 10 17 17 H 1.48501 * 109.47174 * 329.99998 * 14 12 10 18 18 C 1.50701 * 109.47081 * 174.99786 * 3 2 1 19 19 C 1.38255 * 119.99838 * 79.99715 * 18 3 2 20 20 C 1.38220 * 119.99681 * 179.97438 * 19 18 3 21 21 C 1.38253 * 120.00047 * 0.02867 * 20 19 18 22 22 C 1.38205 * 119.99905 * 359.97438 * 21 20 19 23 23 S 1.76206 * 119.99994 * 180.02562 * 22 21 20 24 24 N 1.65606 * 107.21550 * 269.97558 * 23 22 21 25 25 O 1.42100 * 106.40135 * 23.51345 * 23 22 21 26 26 O 1.42102 * 106.40418 * 156.43525 * 23 22 21 27 27 C 1.38208 * 119.99804 * 260.01587 * 18 3 2 28 28 H 1.09002 * 109.47506 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47375 * 300.00980 * 1 2 3 30 30 H 1.09003 * 109.46684 * 60.00352 * 1 2 3 31 31 H 1.09000 * 109.47434 * 239.99551 * 2 1 3 32 32 H 1.09003 * 109.46684 * 119.99648 * 2 1 3 33 33 H 0.96999 * 120.00701 * 265.00385 * 5 3 2 34 34 H 1.09005 * 109.47444 * 300.00861 * 8 6 5 35 35 H 1.09009 * 109.46759 * 60.00114 * 8 6 5 36 36 H 1.09001 * 109.47205 * 300.00259 * 9 8 6 37 37 H 1.09002 * 109.47077 * 60.00580 * 9 8 6 38 38 H 0.96998 * 119.99550 * 179.97438 * 13 12 10 39 39 H 1.08000 * 120.00604 * 359.72524 * 19 18 3 40 40 H 1.08002 * 119.99604 * 180.02562 * 20 19 18 41 41 H 1.08005 * 119.99927 * 180.02562 * 21 20 19 42 42 H 0.96999 * 119.99485 * 149.99948 * 24 23 22 43 43 H 0.96993 * 120.00113 * 329.99733 * 24 23 22 44 44 H 1.07992 * 120.00457 * 0.02562 * 27 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6526 2.0974 -1.2519 6 6 0.4352 2.6643 -1.3671 7 8 -0.3392 2.6327 -0.4343 8 6 0.0368 3.3384 -2.6547 9 6 -1.3820 3.8952 -2.5211 10 6 -1.7802 4.5699 -3.8085 11 1 -1.0904 4.5984 -4.6390 12 6 -3.0254 5.1499 -3.9263 13 7 -3.8655 5.1148 -2.9151 14 14 -3.5192 5.9856 -5.5223 15 1 -4.1694 4.9962 -6.4187 16 1 -4.4699 7.0884 -5.2301 17 1 -2.3109 6.5368 -6.1869 18 6 3.5419 1.4442 0.1239 19 6 4.3275 1.2028 -0.9879 20 6 5.7050 1.2050 -0.8743 21 6 6.2973 1.4479 0.3511 22 6 5.5119 1.6891 1.4624 23 16 6.2667 1.9993 3.0241 24 7 6.4521 0.5365 3.7781 25 8 7.5761 2.4777 2.7489 26 8 5.3180 2.7285 3.7906 27 6 4.1339 1.6867 1.3490 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.2720 2.1230 -1.9979 34 1 0.7283 4.1539 -2.8670 35 1 0.0682 2.6142 -3.4688 36 1 -2.0737 3.0800 -2.3086 37 1 -1.4129 4.6195 -1.7071 38 1 -4.7414 5.5232 -2.9979 39 1 3.8649 1.0087 -1.9443 40 1 6.3187 1.0168 -1.7429 41 1 7.3737 1.4499 0.4397 42 1 7.1869 0.3993 4.3963 43 1 5.8259 -0.1829 3.6016 44 1 3.5203 1.8745 2.2176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291757125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -102.702083 kcal Electronic energy + Delta-G solvation = -26892.944136 eV Core-core repulsion = 22936.615063 eV Total energy + Delta-G solvation = -3956.329073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42726 -39.04056 -37.53018 -36.20117 -35.86789 -33.64523 -33.47092 -32.37776 -31.71023 -31.43825 -30.73710 -26.72310 -25.33550 -23.87489 -22.69022 -22.02115 -20.84297 -19.78716 -19.73854 -18.50497 -17.78565 -17.28459 -16.94431 -16.42369 -16.08181 -15.83092 -15.60532 -15.37133 -14.89277 -14.63333 -14.43709 -13.94876 -13.83436 -13.57221 -13.20035 -12.79331 -12.60451 -12.51277 -12.46716 -12.40559 -12.20735 -12.18999 -12.02016 -11.49204 -11.30491 -11.17116 -11.12564 -10.95052 -10.88167 -10.80356 -10.60670 -9.96834 -9.86802 -9.67577 -9.41193 -9.17409 -9.00347 -8.81795 -8.33225 -5.97369 -4.01777 -0.03426 0.34739 0.79192 2.67273 2.98413 3.20495 3.31926 3.32234 3.38366 3.40701 3.48418 3.98038 4.27193 4.42296 4.46412 4.52450 4.67998 4.91336 4.98527 5.04519 5.17702 5.33011 5.37693 5.44141 5.50950 5.51506 5.56810 5.68597 5.76345 5.81935 5.99471 6.01613 6.17768 6.20206 6.22971 6.34080 6.56072 6.58957 6.67556 6.86115 7.72660 7.79943 7.84544 8.05554 8.37114 8.73169 9.06668 9.61855 11.13504 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002153 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.510238 B =13004.686871 C =13192.523731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.181 3.819 4 H 0.100 0.900 5 N -0.740 5.740 6 C 0.511 3.489 7 O -0.524 6.524 8 C -0.131 4.131 9 C 0.038 3.962 10 C -0.528 4.528 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.103 4.103 19 C -0.054 4.054 20 C -0.135 4.135 21 C -0.020 4.020 22 C -0.674 4.674 23 S 2.702 3.298 24 N -1.249 6.249 25 O -0.964 6.964 26 O -0.957 6.957 27 C -0.011 4.011 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.421 0.579 43 H 0.417 0.583 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.359 -15.168 9.317 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.075 3.925 4 H 0.118 0.882 5 N -0.395 5.395 6 C 0.300 3.700 7 O -0.399 6.399 8 C -0.170 4.170 9 C 0.001 3.999 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.105 4.105 19 C -0.072 4.072 20 C -0.154 4.154 21 C -0.039 4.039 22 C -0.761 4.761 23 S 2.790 3.210 24 N -0.923 5.923 25 O -0.953 6.953 26 O -0.946 6.946 27 C -0.031 4.031 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.229 0.771 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.251 0.749 43 H 0.245 0.755 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.802 -14.101 10.310 29.524 hybrid contribution -0.227 -0.344 -1.722 1.770 sum 23.575 -14.445 8.589 28.952 Atomic orbital electron populations 1.21832 0.93950 1.00660 1.04050 1.21944 0.97696 0.94864 1.01885 1.19861 0.88246 0.94445 0.89900 0.88216 1.46352 1.17938 1.59814 1.15371 1.21521 0.80118 0.77051 0.91294 1.90685 1.50695 1.57621 1.40864 1.21884 1.03119 0.99612 0.92435 1.18889 0.87539 0.96421 0.97087 1.21214 1.00007 1.36248 0.99127 0.92669 1.25023 0.96644 0.96291 0.96427 1.69995 1.07610 1.44671 1.30488 0.86596 0.78410 0.79228 0.83727 1.20686 1.21209 1.19913 1.20192 0.95888 1.00609 0.93804 1.21372 0.93870 0.93465 0.98495 1.21308 0.94881 1.01271 0.97955 1.20952 0.99950 0.91449 0.91597 1.30633 1.04175 1.20007 1.21328 1.01563 0.73591 0.72460 0.73354 1.53133 1.43018 1.33961 1.62139 1.93598 1.38293 1.78338 1.85097 1.93642 1.63748 1.68778 1.68455 1.20861 0.92458 0.91378 0.98418 0.93595 0.91914 0.91614 0.91904 0.91491 0.77075 0.90300 0.90328 0.95812 0.95795 0.92940 0.84898 0.84621 0.84017 0.74922 0.75547 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.52 37.16 0.32 -1.70 16 2 C -0.13 -1.32 5.59 -26.73 -0.15 -1.47 16 3 C 0.18 2.09 2.46 -69.08 -0.17 1.92 16 4 H 0.10 1.36 7.44 -51.93 -0.39 0.97 16 5 N -0.74 -9.56 4.98 -54.93 -0.27 -9.84 16 6 C 0.51 9.20 6.40 -10.98 -0.07 9.12 16 7 O -0.52 -11.38 13.12 5.56 0.07 -11.31 16 8 C -0.13 -2.56 5.64 -27.88 -0.16 -2.71 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 11 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.10 -0.98 4.95 -104.63 -0.52 -1.50 16 19 C -0.05 -0.41 9.05 -39.58 -0.36 -0.77 16 20 C -0.14 -0.92 10.05 -39.58 -0.40 -1.32 16 21 C -0.02 -0.15 9.52 -39.59 -0.38 -0.52 16 22 C -0.67 -5.49 5.97 -39.58 -0.24 -5.73 16 23 S 2.70 21.46 6.28 -107.50 -0.68 20.78 16 24 N -1.25 -4.66 9.52 60.35 0.57 -4.09 16 25 O -0.96 -10.27 17.28 -57.17 -0.99 -11.26 16 26 O -0.96 -11.29 17.29 -57.17 -0.99 -12.27 16 27 C -0.01 -0.11 9.15 -39.58 -0.36 -0.47 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 30 H 0.06 1.08 5.65 -51.93 -0.29 0.79 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.39 3.98 6.88 -40.82 -0.28 3.70 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.13 0.80 6.93 -52.49 -0.36 0.43 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.81 7.62 -52.48 -0.40 0.41 16 42 H 0.42 0.89 8.96 -34.47 -0.31 0.58 16 43 H 0.42 0.69 8.96 -34.47 -0.31 0.38 16 44 H 0.15 1.24 7.60 -52.49 -0.40 0.85 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -38.91 377.63 -9.95 -48.86 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.07 Total: 1.23 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.01 Total: -17.82 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.04 Total: -40.47 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.90 Total: -34.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 21.46 SS G_CDS: -0.68 Total: 20.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.91 -9.95 -48.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291757125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.845 kcal (2) G-P(sol) polarization free energy of solvation -38.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds