Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47359 * 2 1 4 4 H 1.08995 * 109.47572 * 54.99306 * 3 2 1 5 5 N 1.46499 * 109.46763 * 294.99391 * 3 2 1 6 6 C 1.34782 * 119.99701 * 84.99981 * 5 3 2 7 7 O 1.21277 * 120.00186 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99936 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47173 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47173 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99892 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00007 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99900 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47215 * 90.00418 * 14 12 10 16 16 H 1.48503 * 109.46865 * 209.99936 * 14 12 10 17 17 H 1.48501 * 109.47174 * 329.99998 * 14 12 10 18 18 C 1.50701 * 109.47081 * 174.99786 * 3 2 1 19 19 C 1.38255 * 119.99838 * 79.99715 * 18 3 2 20 20 C 1.38220 * 119.99681 * 179.97438 * 19 18 3 21 21 C 1.38253 * 120.00047 * 0.02867 * 20 19 18 22 22 C 1.38205 * 119.99905 * 359.97438 * 21 20 19 23 23 S 1.76206 * 119.99994 * 180.02562 * 22 21 20 24 24 N 1.65606 * 107.21550 * 269.97558 * 23 22 21 25 25 O 1.42100 * 106.40135 * 23.51345 * 23 22 21 26 26 O 1.42102 * 106.40418 * 156.43525 * 23 22 21 27 27 C 1.38208 * 119.99804 * 260.01587 * 18 3 2 28 28 H 1.09002 * 109.47506 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47375 * 300.00980 * 1 2 3 30 30 H 1.09003 * 109.46684 * 60.00352 * 1 2 3 31 31 H 1.09000 * 109.47434 * 239.99551 * 2 1 3 32 32 H 1.09003 * 109.46684 * 119.99648 * 2 1 3 33 33 H 0.96999 * 120.00701 * 265.00385 * 5 3 2 34 34 H 1.09005 * 109.47444 * 300.00861 * 8 6 5 35 35 H 1.09009 * 109.46759 * 60.00114 * 8 6 5 36 36 H 1.09001 * 109.47205 * 300.00259 * 9 8 6 37 37 H 1.09002 * 109.47077 * 60.00580 * 9 8 6 38 38 H 0.96998 * 119.99550 * 179.97438 * 13 12 10 39 39 H 1.08000 * 120.00604 * 359.72524 * 19 18 3 40 40 H 1.08002 * 119.99604 * 180.02562 * 20 19 18 41 41 H 1.08005 * 119.99927 * 180.02562 * 21 20 19 42 42 H 0.96999 * 119.99485 * 149.99948 * 24 23 22 43 43 H 0.96993 * 120.00113 * 329.99733 * 24 23 22 44 44 H 1.07992 * 120.00457 * 0.02562 * 27 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6526 2.0974 -1.2519 6 6 0.4352 2.6643 -1.3671 7 8 -0.3392 2.6327 -0.4343 8 6 0.0368 3.3384 -2.6547 9 6 -1.3820 3.8952 -2.5211 10 6 -1.7802 4.5699 -3.8085 11 1 -1.0904 4.5984 -4.6390 12 6 -3.0254 5.1499 -3.9263 13 7 -3.8655 5.1148 -2.9151 14 14 -3.5192 5.9856 -5.5223 15 1 -4.1694 4.9962 -6.4187 16 1 -4.4699 7.0884 -5.2301 17 1 -2.3109 6.5368 -6.1869 18 6 3.5419 1.4442 0.1239 19 6 4.3275 1.2028 -0.9879 20 6 5.7050 1.2050 -0.8743 21 6 6.2973 1.4479 0.3511 22 6 5.5119 1.6891 1.4624 23 16 6.2667 1.9993 3.0241 24 7 6.4521 0.5365 3.7781 25 8 7.5761 2.4777 2.7489 26 8 5.3180 2.7285 3.7906 27 6 4.1339 1.6867 1.3490 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.2720 2.1230 -1.9979 34 1 0.7283 4.1539 -2.8670 35 1 0.0682 2.6142 -3.4688 36 1 -2.0737 3.0800 -2.3086 37 1 -1.4129 4.6195 -1.7071 38 1 -4.7414 5.5232 -2.9979 39 1 3.8649 1.0087 -1.9443 40 1 6.3187 1.0168 -1.7429 41 1 7.3737 1.4499 0.4397 42 1 7.1869 0.3993 4.3963 43 1 5.8259 -0.1829 3.6016 44 1 3.5203 1.8745 2.2176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291757125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -133.933752 kcal Electronic energy + Delta-G solvation = -26894.298443 eV Core-core repulsion = 22936.615063 eV Total energy + Delta-G solvation = -3957.683380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39382 -40.11601 -38.29265 -37.01489 -36.93253 -35.52603 -34.06581 -33.69994 -32.62377 -32.28826 -32.18314 -28.15421 -26.85543 -24.56952 -23.77517 -23.38349 -21.89227 -21.16023 -20.42843 -19.24306 -18.76080 -18.35519 -17.82898 -17.59852 -17.07734 -16.82929 -16.72109 -16.52084 -16.36435 -15.63364 -15.38040 -15.15494 -14.86535 -14.66903 -14.29432 -14.12306 -13.87859 -13.45088 -13.32879 -13.27755 -13.23301 -13.19925 -13.18160 -12.96442 -12.81476 -12.54963 -12.45807 -12.04336 -11.90952 -11.88300 -11.77438 -11.61416 -11.32828 -11.29213 -10.70892 -10.56687 -10.43303 -10.13498 -9.86976 -8.18055 -6.31828 -0.64755 -0.27531 0.16323 1.41571 1.44205 1.55038 1.76485 2.08639 2.25480 2.40486 2.45890 2.75538 3.15058 3.25635 3.58602 3.80024 3.96312 4.01241 4.04310 4.13484 4.19341 4.34491 4.43820 4.52244 4.56716 4.58856 4.72771 4.84062 4.88828 4.98187 5.00329 5.07092 5.14165 5.22846 5.26351 5.27716 5.45403 5.50019 5.58741 5.64970 5.75581 5.86333 6.18255 6.34821 6.60893 6.87113 7.37465 7.39733 8.94452 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002153 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.510238 B =13004.686871 C =13192.523731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.182 3.818 4 H 0.072 0.928 5 N -0.716 5.716 6 C 0.514 3.486 7 O -0.572 6.572 8 C -0.121 4.121 9 C 0.044 3.956 10 C -0.542 4.542 11 H 0.075 0.925 12 C -0.008 4.008 13 N -0.937 5.937 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.256 1.256 18 C -0.114 4.114 19 C -0.053 4.053 20 C -0.129 4.129 21 C -0.023 4.023 22 C -0.673 4.673 23 S 2.724 3.276 24 N -1.230 6.230 25 O -0.991 6.991 26 O -1.001 7.001 27 C -0.026 4.026 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.413 0.587 34 H 0.100 0.900 35 H 0.104 0.896 36 H -0.016 1.016 37 H -0.020 1.020 38 H 0.262 0.738 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.431 0.569 43 H 0.430 0.570 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.323 -16.492 6.935 32.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.077 3.923 4 H 0.090 0.910 5 N -0.370 5.370 6 C 0.302 3.698 7 O -0.450 6.450 8 C -0.160 4.160 9 C 0.007 3.993 10 C -0.580 4.580 11 H 0.093 0.907 12 C -0.205 4.205 13 N -0.577 5.577 14 Si 0.796 3.204 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.180 1.180 18 C -0.115 4.115 19 C -0.071 4.071 20 C -0.148 4.148 21 C -0.042 4.042 22 C -0.762 4.762 23 S 2.813 3.187 24 N -0.910 5.910 25 O -0.981 6.981 26 O -0.990 6.990 27 C -0.046 4.046 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.002 0.998 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.177 0.823 42 H 0.264 0.736 43 H 0.260 0.740 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 26.844 -15.458 7.922 31.973 hybrid contribution -1.089 -0.003 -0.927 1.430 sum 25.754 -15.461 6.994 30.842 Atomic orbital electron populations 1.21772 0.96531 1.00739 1.01268 1.21906 0.95108 0.94450 1.04055 1.19854 0.90037 0.94531 0.87898 0.91030 1.46019 1.16283 1.58092 1.16636 1.21177 0.81273 0.77216 0.90113 1.90681 1.52550 1.59672 1.42138 1.21641 0.99146 1.00945 0.94304 1.18660 0.91208 0.94160 0.95307 1.21723 1.00524 1.35826 0.99952 0.90680 1.26132 0.96761 0.97112 1.00501 1.70179 1.08179 1.46031 1.33352 0.85340 0.78456 0.77905 0.78652 1.19621 1.21306 1.17965 1.19951 0.94232 1.02568 0.94761 1.21624 0.94342 0.92604 0.98535 1.21668 0.94701 0.99756 0.98650 1.21308 1.00892 0.90461 0.91533 1.30497 1.03674 1.20466 1.21554 1.00600 0.72301 0.72753 0.73057 1.52702 1.43684 1.32857 1.61756 1.93558 1.39398 1.79579 1.85518 1.93597 1.64850 1.70845 1.69748 1.20887 0.93051 0.92142 0.98493 0.91968 0.94399 0.94766 0.89736 0.89162 0.74914 0.88217 0.87740 0.99796 1.00138 0.92911 0.82801 0.81492 0.82296 0.73632 0.74017 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.52 71.98 0.61 -3.45 16 2 C -0.12 -2.31 5.59 30.59 0.17 -2.14 16 3 C 0.18 4.09 2.46 44.25 0.11 4.20 16 4 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 5 N -0.72 -17.74 4.98 -446.10 -2.22 -19.96 16 6 C 0.51 18.85 6.40 87.66 0.56 19.41 16 7 O -0.57 -26.50 13.12 -3.02 -0.04 -26.54 16 8 C -0.12 -4.71 5.64 29.85 0.17 -4.54 16 9 C 0.04 2.45 4.26 29.85 0.13 2.57 16 10 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 11 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 12 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 13 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 14 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 C -0.11 -1.94 4.95 -19.87 -0.10 -2.04 16 19 C -0.05 -0.62 9.05 22.27 0.20 -0.42 16 20 C -0.13 -1.22 10.05 22.27 0.22 -1.00 16 21 C -0.02 -0.26 9.52 22.27 0.21 -0.05 16 22 C -0.67 -9.91 5.97 22.27 0.13 -9.78 16 23 S 2.72 41.32 6.28 -56.49 -0.35 40.97 16 24 N -1.23 -7.31 9.52 37.02 0.35 -6.96 16 25 O -0.99 -20.17 17.28 -128.00 -2.21 -22.38 16 26 O -1.00 -24.06 17.29 -128.00 -2.21 -26.28 16 27 C -0.03 -0.45 9.15 22.27 0.20 -0.25 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.21 7.85 -2.39 -0.02 1.19 16 30 H 0.03 1.16 5.65 -2.39 -0.01 1.14 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.41 7.16 6.88 -92.71 -0.64 6.52 16 34 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 35 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 36 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 37 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.15 1.12 6.93 -2.91 -0.02 1.10 16 40 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.16 1.29 7.62 -2.91 -0.02 1.27 16 42 H 0.43 1.10 8.96 -96.75 -0.87 0.23 16 43 H 0.43 0.61 8.96 -96.75 -0.87 -0.26 16 44 H 0.14 2.49 7.60 -2.91 -0.02 2.47 16 Total: -1.00 -89.58 377.63 -2.37 -91.96 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -1.32 Total: 10.19 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.32 Total: -27.99 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.58 Total: -86.28 kcal Atomic # 8 Polarization: -70.73 SS G_CDS: -4.46 Total: -75.19 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 41.32 SS G_CDS: -0.35 Total: 40.97 kcal Total: -89.58 -2.37 -91.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291757125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.978 kcal (2) G-P(sol) polarization free energy of solvation -89.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds