Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 H 1.09004 * 109.46841 * 305.00209 * 3 2 1 5 5 C 1.52995 * 109.47120 * 184.99645 * 3 2 1 6 6 N 1.46501 * 109.47212 * 184.99650 * 5 3 2 7 7 S 1.65596 * 120.00083 * 164.99807 * 6 5 3 8 8 C 1.81406 * 104.44777 * 65.00628 * 7 6 5 9 9 O 1.42094 * 104.27865 * 181.07623 * 7 6 5 10 10 O 1.42099 * 104.28113 * 308.93793 * 7 6 5 11 11 N 1.46494 * 109.46941 * 64.99642 * 3 2 1 12 12 C 1.34779 * 120.00276 * 275.27467 * 11 3 2 13 13 O 1.21545 * 120.00206 * 359.72823 * 12 11 3 14 14 C 1.47890 * 120.00090 * 179.72377 * 12 11 3 15 15 C 1.39924 * 120.02345 * 359.73036 * 14 12 11 16 16 C 1.38329 * 120.35512 * 179.71446 * 15 14 12 17 17 C 1.37753 * 120.41246 * 0.55821 * 16 15 14 18 18 C 1.40752 * 120.03875 * 359.71871 * 17 16 15 19 19 C 1.41439 * 120.17871 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99545 * 24.44035 * 19 18 17 21 21 C 1.39939 * 120.00394 * 204.44133 * 19 18 17 22 22 N 1.30826 * 119.99591 * 17.87943 * 21 19 18 23 23 Si 1.86795 * 120.00089 * 197.88145 * 21 19 18 24 24 H 1.48504 * 109.47106 * 89.99856 * 23 21 19 25 25 H 1.48504 * 109.47005 * 209.99706 * 23 21 19 26 26 H 1.48495 * 109.47362 * 329.99708 * 23 21 19 27 27 C 1.38991 * 120.02309 * 179.97438 * 14 12 11 28 28 H 1.08998 * 109.47005 * 300.00095 * 1 2 3 29 29 H 1.09002 * 109.46552 * 60.00146 * 1 2 3 30 30 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47249 * 240.00389 * 2 1 3 32 32 H 1.08997 * 109.46929 * 119.99613 * 2 1 3 33 33 H 1.08993 * 109.47318 * 305.00182 * 5 3 2 34 34 H 1.09006 * 109.47000 * 65.00132 * 5 3 2 35 35 H 0.96995 * 119.99800 * 345.00989 * 6 5 3 36 36 H 1.08998 * 109.47030 * 59.99413 * 8 7 6 37 37 H 1.08996 * 109.47256 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.46952 * 299.99991 * 8 7 6 39 39 H 0.97004 * 119.99955 * 95.00258 * 11 3 2 40 40 H 1.07998 * 119.81984 * 359.97438 * 15 14 12 41 41 H 1.07994 * 119.79307 * 180.26072 * 16 15 14 42 42 H 1.07998 * 119.97899 * 179.74656 * 17 16 15 43 43 H 0.97004 * 119.99686 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.20595 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0631 2.8169 -0.0059 7 16 5.6727 3.0925 0.2685 8 6 6.4982 2.4786 -1.2256 9 8 5.7771 4.5072 0.3502 10 8 5.9840 2.2692 1.3841 11 7 1.6524 2.0975 1.2517 12 6 0.4330 2.6596 1.3688 13 8 -0.3433 2.6274 0.4341 14 6 0.0394 3.3154 2.6345 15 6 0.9305 3.3477 3.7129 16 6 0.5717 3.9644 4.8979 17 6 -0.6706 4.5437 5.0343 18 6 -1.5825 4.5160 3.9625 19 6 -2.8586 5.1103 4.0991 20 1 -3.0120 5.9002 4.8195 21 6 -3.9224 4.6748 3.3010 22 7 -3.8537 3.5181 2.6937 23 14 -5.4405 5.7451 3.1028 24 1 -5.2611 6.6476 1.9373 25 1 -6.6290 4.8824 2.8826 26 1 -5.6383 6.5560 4.3310 27 6 -1.2178 3.8956 2.7555 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9954 0.8312 0.6660 34 1 3.8500 1.0378 -1.0960 35 1 3.4500 3.5642 -0.0873 36 1 6.1335 3.0275 -2.0938 37 1 7.5745 2.6222 -1.1312 38 1 6.2824 1.4174 -1.3499 39 1 2.2719 2.1232 1.9978 40 1 1.9052 2.8923 3.6179 41 1 1.2682 3.9877 5.7230 42 1 -0.9449 5.0197 5.9641 43 1 -4.5909 3.2164 2.1402 44 1 -1.9100 3.8699 1.9270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295603120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -123.800380 kcal Electronic energy + Delta-G solvation = -27683.477479 eV Core-core repulsion = 23726.233515 eV Total energy + Delta-G solvation = -3957.243964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12543 -39.06914 -38.14065 -37.62841 -36.93559 -35.62567 -34.80261 -33.50526 -31.67766 -31.23547 -30.21133 -29.06282 -27.18705 -24.71118 -23.99229 -22.82566 -21.84652 -21.18825 -20.26426 -19.52421 -18.58858 -17.92781 -17.53575 -17.29320 -17.02970 -16.73223 -16.41430 -16.24320 -15.69276 -15.44546 -15.08802 -14.66915 -14.57499 -14.32054 -14.26523 -14.04372 -13.92414 -13.78578 -13.48968 -13.37807 -13.14779 -13.07185 -12.95589 -12.89129 -12.80947 -12.52380 -12.39439 -12.18777 -12.01521 -11.84813 -11.80605 -11.69259 -11.49605 -11.07979 -10.69684 -10.37522 -9.95545 -9.46237 -9.38262 -8.66929 -6.38302 -0.60740 0.41622 1.00662 1.35872 1.47576 1.50020 1.81617 2.15409 2.19655 2.34387 2.80021 2.98015 3.32892 3.62526 3.70525 3.99404 4.08414 4.14822 4.20368 4.28299 4.41073 4.44637 4.47512 4.57271 4.65902 4.81650 4.86066 4.96087 5.01004 5.06751 5.08569 5.10994 5.19282 5.28195 5.32298 5.51254 5.54240 5.65782 5.87028 5.93717 6.01608 6.05121 6.28862 6.52900 6.72224 6.88010 6.94353 7.41511 8.29676 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002966 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.883927 B = 9437.664876 C =10313.580880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.134 3.866 4 H 0.082 0.918 5 C 0.107 3.893 6 N -1.123 6.123 7 S 2.620 3.380 8 C -0.648 4.648 9 O -1.008 7.008 10 O -0.997 6.997 11 N -0.710 5.710 12 C 0.565 3.435 13 O -0.571 6.571 14 C -0.139 4.139 15 C -0.203 4.203 16 C -0.098 4.098 17 C -0.221 4.221 18 C 0.067 3.933 19 C -0.498 4.498 20 H 0.081 0.919 21 C 0.031 3.969 22 N -0.822 5.822 23 Si 0.983 3.017 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.253 1.253 27 C -0.128 4.128 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.418 0.582 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.407 0.593 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.287 0.713 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.362 -7.943 -10.672 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.028 3.972 4 H 0.100 0.900 5 C -0.019 4.019 6 N -0.882 5.882 7 S 2.716 3.284 8 C -0.802 4.802 9 O -0.999 6.999 10 O -0.987 6.987 11 N -0.364 5.364 12 C 0.355 3.645 13 O -0.452 6.452 14 C -0.142 4.142 15 C -0.223 4.223 16 C -0.116 4.116 17 C -0.241 4.241 18 C 0.065 3.935 19 C -0.527 4.527 20 H 0.100 0.900 21 C -0.184 4.184 22 N -0.447 5.447 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.176 1.176 27 C -0.148 4.148 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.252 0.748 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.244 0.756 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.202 -7.921 -10.673 22.538 hybrid contribution -1.282 0.621 -0.128 1.430 sum 16.920 -7.299 -10.801 21.359 Atomic orbital electron populations 1.21739 0.97300 1.00263 1.00898 1.21926 0.94805 0.95184 1.04479 1.21413 0.94675 0.94216 0.86878 0.90012 1.21871 0.92228 0.82337 1.05451 1.55452 1.27085 1.14213 1.91486 1.04319 0.73593 0.72902 0.77550 1.30302 1.14765 1.15227 1.19931 1.93574 1.85886 1.32342 1.88081 1.93567 1.83962 1.70810 1.50314 1.45843 1.15388 1.57672 1.17451 1.18445 0.81777 0.77246 0.87061 1.90684 1.52537 1.60567 1.41375 1.19885 0.96172 1.03549 0.94642 1.20828 0.99403 1.08017 0.94025 1.20891 0.95829 0.97435 0.97435 1.21374 0.96462 1.08245 0.97976 1.17958 0.93687 0.90936 0.90907 1.19854 0.94141 1.18762 1.19976 0.90047 1.26828 1.03507 0.95288 0.92808 1.69888 1.33540 1.17800 1.23492 0.85193 0.75973 0.78583 0.79923 1.19044 1.19285 1.17598 1.21433 0.94513 1.01101 0.97799 0.95954 0.93907 0.92537 0.87241 0.90593 0.88583 0.85660 0.74784 0.83406 0.83856 0.82590 0.75552 0.85329 0.84975 0.87638 0.90283 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.51 71.98 0.61 -3.61 16 2 C -0.13 -2.39 5.61 30.60 0.17 -2.22 16 3 C 0.13 2.76 2.39 44.99 0.11 2.87 16 4 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 5 C 0.11 1.24 5.69 86.38 0.49 1.73 16 6 N -1.12 -16.39 5.63 -187.50 -1.06 -17.45 16 7 S 2.62 39.13 6.10 -56.49 -0.34 38.78 16 8 C -0.65 -2.41 10.89 113.37 1.23 -1.17 16 9 O -1.01 -25.19 18.08 -127.65 -2.31 -27.50 16 10 O -1.00 -22.02 17.50 -127.65 -2.23 -24.25 16 11 N -0.71 -20.57 4.64 -445.37 -2.07 -22.63 16 12 C 0.57 23.44 6.33 86.80 0.55 23.99 16 13 O -0.57 -27.15 13.45 -3.86 -0.05 -27.21 16 14 C -0.14 -6.60 5.87 -20.13 -0.12 -6.72 16 15 C -0.20 -8.36 9.55 22.70 0.22 -8.14 16 16 C -0.10 -4.11 10.01 22.18 0.22 -3.89 16 17 C -0.22 -10.72 9.78 22.77 0.22 -10.49 16 18 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 19 C -0.50 -27.56 9.05 23.47 0.21 -27.35 16 20 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 21 C 0.03 1.63 5.14 85.25 0.44 2.06 16 22 N -0.82 -45.81 10.96 21.82 0.24 -45.57 16 23 Si 0.98 40.00 29.59 68.60 2.03 42.03 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 27 C -0.13 -7.13 8.24 23.01 0.19 -6.94 16 28 H 0.02 0.83 5.63 -2.39 -0.01 0.82 16 29 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.00 7.69 -2.39 -0.02 0.98 16 34 H 0.13 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.42 7.42 8.54 -96.75 -0.83 6.59 16 36 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.16 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.41 10.65 6.62 -92.70 -0.61 10.03 16 40 H 0.13 4.23 6.38 -2.91 -0.02 4.21 16 41 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 44 H 0.10 6.26 5.74 -2.91 -0.02 6.24 16 Total: -1.00 -82.98 375.23 -1.76 -84.74 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.40 Total: 35.31 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 4.43 Total: -36.25 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.88 Total: -85.65 kcal Atomic # 8 Polarization: -74.36 SS G_CDS: -4.59 Total: -78.95 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 39.13 SS G_CDS: -0.34 Total: 38.78 kcal Total: -82.98 -1.76 -84.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295603120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.063 kcal (2) G-P(sol) polarization free energy of solvation -82.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds