Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 N 1.46497 * 109.47468 * 179.97438 * 3 2 1 5 5 C 1.36979 * 120.00018 * 269.65874 * 4 3 2 6 6 H 1.08000 * 119.99963 * 182.10620 * 5 4 3 7 7 C 1.38959 * 120.00321 * 2.37505 * 5 4 3 8 8 N 1.31432 * 119.99874 * 25.11488 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 205.11272 * 7 5 4 10 10 H 1.48500 * 109.46797 * 60.00012 * 9 7 5 11 11 H 1.48493 * 109.47025 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47249 * 300.00105 * 9 7 5 13 13 C 1.34779 * 119.99843 * 89.65018 * 4 3 2 14 14 O 1.21705 * 119.99957 * 174.12687 * 13 4 3 15 15 C 1.46746 * 120.00030 * 354.12482 * 13 4 3 16 16 C 1.38086 * 126.69355 * 353.11351 * 15 13 4 17 17 N 1.34588 * 108.87684 * 179.89066 * 16 15 13 18 18 H 0.96999 * 124.98822 * 180.15362 * 17 16 15 19 19 N 1.40014 * 110.02622 * 0.38272 * 17 16 15 20 20 C 1.36618 * 108.28126 * 359.76736 * 19 17 16 21 21 N 1.32067 * 122.60757 * 180.02562 * 20 19 17 22 22 C 1.33894 * 121.97120 * 359.91770 * 21 20 19 23 23 O 1.21962 * 120.78537 * 180.02562 * 22 21 20 24 24 C 1.47508 * 118.42816 * 0.07461 * 22 21 20 25 25 C 1.39273 * 121.86981 * 179.97438 * 24 22 21 26 26 C 1.37845 * 119.48384 * 179.97438 * 25 24 22 27 27 C 1.38731 * 120.46426 * 359.97438 * 26 25 24 28 28 C 1.37933 * 120.65416 * 0.02562 * 27 26 25 29 29 C 1.38394 * 131.52899 * 179.74091 * 19 17 16 30 30 H 1.09004 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47249 * 299.99984 * 1 2 3 32 32 H 1.08999 * 109.47277 * 59.99690 * 1 2 3 33 33 H 1.08999 * 109.47249 * 240.00016 * 2 1 3 34 34 H 1.09001 * 109.46632 * 119.99641 * 2 1 3 35 35 H 1.09007 * 109.47084 * 60.00259 * 3 2 1 36 36 H 1.08999 * 109.47351 * 300.00265 * 3 2 1 37 37 H 0.96997 * 119.99887 * 180.02562 * 8 7 5 38 38 H 1.08005 * 125.55812 * 0.03424 * 16 15 13 39 39 H 1.07999 * 120.25357 * 359.94904 * 25 24 22 40 40 H 1.08002 * 119.76731 * 179.97438 * 26 25 24 41 41 H 1.08000 * 119.67549 * 180.02562 * 27 26 25 42 42 H 1.08002 * 120.16164 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1894 1.4499 1.1872 6 1 5.2688 1.4843 1.1877 7 6 3.4950 1.4073 2.3901 8 7 2.2921 0.8798 2.4362 9 14 4.2713 2.0996 3.9417 10 1 4.5641 3.5425 3.7472 11 1 3.3331 1.9345 5.0807 12 1 5.5338 1.3729 4.2303 13 6 4.1793 1.4353 -1.1663 14 8 5.3916 1.5433 -1.1693 15 6 3.4519 1.2973 -2.4333 16 6 2.1050 1.0347 -2.5870 17 7 1.8182 0.9853 -3.9011 18 1 0.9379 0.8173 -4.2723 19 7 2.9779 1.2069 -4.6536 20 6 4.0177 1.4054 -3.7900 21 7 5.2500 1.6413 -4.2022 22 6 5.5636 1.7003 -5.5026 23 8 6.7092 1.9191 -5.8592 24 6 4.4905 1.4953 -6.4937 25 6 4.7362 1.5418 -7.8638 26 6 3.6964 1.3427 -8.7466 27 6 2.4137 1.0970 -8.2788 28 6 2.1564 1.0483 -6.9246 29 6 3.1910 1.2473 -6.0204 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9563 -0.8899 37 1 1.8073 0.8505 3.2758 38 1 1.3967 0.8944 -1.7838 39 1 5.7335 1.7328 -8.2316 40 1 3.8817 1.3782 -9.8101 41 1 1.6086 0.9424 -8.9819 42 1 1.1548 0.8561 -6.5691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299155306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = 115.338580 kcal Electronic energy + Delta-G solvation = -29572.600529 eV Core-core repulsion = 25522.575208 eV Total energy + Delta-G solvation = -4050.025321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32208 -39.82755 -38.43213 -37.89793 -35.83754 -35.14945 -33.47644 -32.54423 -31.48456 -31.25882 -30.01455 -29.58831 -26.16498 -25.00990 -24.28335 -23.99989 -22.55232 -22.01222 -20.95657 -20.28433 -18.99904 -18.40339 -17.36102 -17.08759 -16.76101 -16.30851 -16.08552 -15.49870 -14.93227 -14.65729 -14.55006 -14.31229 -14.18650 -14.08565 -13.74577 -13.67465 -13.03529 -12.82854 -12.60634 -12.46829 -12.35039 -11.90830 -11.74701 -11.53414 -11.37931 -11.12054 -10.85636 -10.70473 -10.69321 -10.43991 -10.34737 -10.19072 -9.92620 -9.41366 -8.93924 -8.78369 -8.60578 -8.42822 -7.86546 -7.64468 -6.46468 -3.79523 0.48030 0.58938 0.92536 1.34404 1.97133 3.06572 3.18546 3.22951 3.23985 3.33349 3.88542 4.08188 4.11222 4.16528 4.33784 4.36113 4.54446 4.73796 4.84710 4.86525 4.91248 5.03065 5.03915 5.25319 5.37928 5.50920 5.53668 5.63047 5.67995 5.75925 5.88388 5.90341 6.03185 6.10527 6.20807 6.29105 6.41547 6.52157 6.63864 6.65169 7.10800 7.12986 7.36198 7.61019 8.01370 8.10020 8.44718 8.54784 9.13487 9.32987 9.97159 10.51660 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.003377 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.388037 B = 8290.588823 C = 9653.944350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.102 3.898 4 N -0.435 5.435 5 C -0.291 4.291 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.512 3.488 14 O -0.558 6.558 15 C -0.221 4.221 16 C 0.137 3.863 17 N -0.478 5.478 18 H 0.444 0.556 19 N -0.349 5.349 20 C 0.486 3.514 21 N -0.563 5.563 22 C 0.532 3.468 23 O -0.504 6.504 24 C -0.191 4.191 25 C -0.024 4.024 26 C -0.151 4.151 27 C -0.062 4.062 28 C -0.167 4.167 29 C 0.193 3.807 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.248 0.752 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 -1.851 -14.808 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C -0.021 4.021 4 N -0.153 5.153 5 C -0.419 4.419 6 H 0.128 0.872 7 C -0.173 4.173 8 N -0.505 5.505 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.301 3.699 14 O -0.440 6.440 15 C -0.237 4.237 16 C 0.000 4.000 17 N -0.196 5.196 18 H 0.290 0.710 19 N -0.137 5.137 20 C 0.232 3.768 21 N -0.309 5.309 22 C 0.318 3.682 23 O -0.381 6.381 24 C -0.201 4.201 25 C -0.044 4.044 26 C -0.170 4.170 27 C -0.081 4.081 28 C -0.189 4.189 29 C 0.093 3.907 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.263 0.737 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.428 -1.583 -14.708 19.321 hybrid contribution -1.211 -0.045 -0.063 1.213 sum -13.639 -1.627 -14.771 20.171 Atomic orbital electron populations 1.21711 0.96960 1.00702 1.00810 1.22191 0.94047 0.98483 1.03537 1.22141 0.81689 0.96766 1.01531 1.43607 1.04807 1.62352 1.04576 1.19781 0.93642 1.47093 0.81358 0.87214 1.25172 0.96254 0.96639 0.99210 1.70078 1.13525 1.39528 1.27398 0.86062 0.78973 0.80164 0.80040 1.19908 1.21099 1.19770 1.16357 0.86801 0.85527 0.81231 1.90752 1.12820 1.54668 1.85809 1.20742 0.91423 1.19570 0.91959 1.25258 0.98599 0.92845 0.83263 1.43695 1.02559 1.71369 1.01935 0.71009 1.45230 1.02553 1.62323 1.03609 1.21794 0.81273 0.84440 0.89329 1.69130 1.11745 1.32572 1.17426 1.18825 0.88064 0.77424 0.83858 1.90769 1.20773 1.46017 1.80494 1.21352 0.92947 1.08274 0.97558 1.21191 1.00308 0.92454 0.90404 1.21228 0.92564 1.02876 1.00360 1.21106 0.97306 0.95435 0.94216 1.20557 0.97541 1.07556 0.93205 1.17886 0.94863 0.99290 0.78620 0.93449 0.91811 0.94826 0.94479 0.86545 0.86771 0.94240 0.92103 0.73718 0.83521 0.84763 0.84740 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.74 37.16 0.36 -1.38 16 2 C -0.14 -2.35 4.69 -26.73 -0.13 -2.47 16 3 C 0.10 1.89 4.10 -4.05 -0.02 1.87 16 4 N -0.44 -10.22 2.62 -116.26 -0.30 -10.52 16 5 C -0.29 -7.53 9.47 -14.98 -0.14 -7.68 16 6 H 0.11 3.09 7.28 -52.49 -0.38 2.70 16 7 C 0.03 0.71 5.00 -17.46 -0.09 0.62 16 8 N -0.87 -19.31 8.23 55.50 0.46 -18.85 16 9 Si 0.92 19.34 29.62 -169.99 -5.04 14.31 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.51 12.62 7.59 -12.82 -0.10 12.52 16 14 O -0.56 -16.41 16.46 5.18 0.09 -16.33 16 15 C -0.22 -4.34 6.14 -102.79 -0.63 -4.97 16 16 C 0.14 1.84 8.58 -16.40 -0.14 1.70 16 17 N -0.48 -5.06 7.02 30.92 0.22 -4.85 16 18 H 0.44 2.44 8.61 -182.66 -1.57 0.86 16 19 N -0.35 -5.19 3.92 -8.39 -0.03 -5.22 16 20 C 0.49 9.78 7.97 -154.19 -1.23 8.55 16 21 N -0.56 -13.27 10.34 -10.95 -0.11 -13.39 16 22 C 0.53 11.46 7.95 -12.88 -0.10 11.36 16 23 O -0.50 -12.03 17.46 4.95 0.09 -11.95 16 24 C -0.19 -3.09 5.89 -104.88 -0.62 -3.71 16 25 C -0.02 -0.30 9.67 -39.34 -0.38 -0.68 16 26 C -0.15 -1.34 10.02 -39.54 -0.40 -1.73 16 27 C -0.06 -0.48 10.02 -39.51 -0.40 -0.88 16 28 C -0.17 -1.56 9.86 -39.47 -0.39 -1.95 16 29 C 0.19 2.66 6.66 -83.83 -0.56 2.10 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.30 7.32 -51.93 -0.38 -0.08 16 33 H 0.04 0.57 6.29 -51.93 -0.33 0.24 16 34 H 0.12 2.35 6.25 -51.93 -0.32 2.02 16 35 H 0.11 2.31 5.82 -51.93 -0.30 2.01 16 36 H 0.04 0.61 4.77 -51.93 -0.25 0.36 16 37 H 0.27 5.76 8.31 -40.82 -0.34 5.42 16 38 H 0.25 2.84 2.12 -52.48 -0.11 2.73 16 39 H 0.15 1.76 7.81 -52.49 -0.41 1.35 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.78 7.71 -52.49 -0.40 0.38 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -35.96 345.05 -9.68 -45.64 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.29 Total: 2.68 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: -4.95 Total: 13.27 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.22 Total: -52.83 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: 0.17 Total: -28.27 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.04 Total: 14.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.96 -9.68 -45.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299155306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.980 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds