Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 N 1.46497 * 109.47468 * 179.97438 * 3 2 1 5 5 C 1.36979 * 120.00018 * 269.65874 * 4 3 2 6 6 H 1.08000 * 119.99963 * 182.10620 * 5 4 3 7 7 C 1.38959 * 120.00321 * 2.37505 * 5 4 3 8 8 N 1.31432 * 119.99874 * 25.11488 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 205.11272 * 7 5 4 10 10 H 1.48500 * 109.46797 * 60.00012 * 9 7 5 11 11 H 1.48493 * 109.47025 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47249 * 300.00105 * 9 7 5 13 13 C 1.34779 * 119.99843 * 89.65018 * 4 3 2 14 14 O 1.21705 * 119.99957 * 174.12687 * 13 4 3 15 15 C 1.46746 * 120.00030 * 354.12482 * 13 4 3 16 16 C 1.38086 * 126.69355 * 353.11351 * 15 13 4 17 17 N 1.34588 * 108.87684 * 179.89066 * 16 15 13 18 18 H 0.96999 * 124.98822 * 180.15362 * 17 16 15 19 19 N 1.40014 * 110.02622 * 0.38272 * 17 16 15 20 20 C 1.36618 * 108.28126 * 359.76736 * 19 17 16 21 21 N 1.32067 * 122.60757 * 180.02562 * 20 19 17 22 22 C 1.33894 * 121.97120 * 359.91770 * 21 20 19 23 23 O 1.21962 * 120.78537 * 180.02562 * 22 21 20 24 24 C 1.47508 * 118.42816 * 0.07461 * 22 21 20 25 25 C 1.39273 * 121.86981 * 179.97438 * 24 22 21 26 26 C 1.37845 * 119.48384 * 179.97438 * 25 24 22 27 27 C 1.38731 * 120.46426 * 359.97438 * 26 25 24 28 28 C 1.37933 * 120.65416 * 0.02562 * 27 26 25 29 29 C 1.38394 * 131.52899 * 179.74091 * 19 17 16 30 30 H 1.09004 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47249 * 299.99984 * 1 2 3 32 32 H 1.08999 * 109.47277 * 59.99690 * 1 2 3 33 33 H 1.08999 * 109.47249 * 240.00016 * 2 1 3 34 34 H 1.09001 * 109.46632 * 119.99641 * 2 1 3 35 35 H 1.09007 * 109.47084 * 60.00259 * 3 2 1 36 36 H 1.08999 * 109.47351 * 300.00265 * 3 2 1 37 37 H 0.96997 * 119.99887 * 180.02562 * 8 7 5 38 38 H 1.08005 * 125.55812 * 0.03424 * 16 15 13 39 39 H 1.07999 * 120.25357 * 359.94904 * 25 24 22 40 40 H 1.08002 * 119.76731 * 179.97438 * 26 25 24 41 41 H 1.08000 * 119.67549 * 180.02562 * 27 26 25 42 42 H 1.08002 * 120.16164 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1894 1.4499 1.1872 6 1 5.2688 1.4843 1.1877 7 6 3.4950 1.4073 2.3901 8 7 2.2921 0.8798 2.4362 9 14 4.2713 2.0996 3.9417 10 1 4.5641 3.5425 3.7472 11 1 3.3331 1.9345 5.0807 12 1 5.5338 1.3729 4.2303 13 6 4.1793 1.4353 -1.1663 14 8 5.3916 1.5433 -1.1693 15 6 3.4519 1.2973 -2.4333 16 6 2.1050 1.0347 -2.5870 17 7 1.8182 0.9853 -3.9011 18 1 0.9379 0.8173 -4.2723 19 7 2.9779 1.2069 -4.6536 20 6 4.0177 1.4054 -3.7900 21 7 5.2500 1.6413 -4.2022 22 6 5.5636 1.7003 -5.5026 23 8 6.7092 1.9191 -5.8592 24 6 4.4905 1.4953 -6.4937 25 6 4.7362 1.5418 -7.8638 26 6 3.6964 1.3427 -8.7466 27 6 2.4137 1.0970 -8.2788 28 6 2.1564 1.0483 -6.9246 29 6 3.1910 1.2473 -6.0204 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9563 -0.8899 37 1 1.8073 0.8505 3.2758 38 1 1.3967 0.8944 -1.7838 39 1 5.7335 1.7328 -8.2316 40 1 3.8817 1.3782 -9.8101 41 1 1.6086 0.9424 -8.9819 42 1 1.1548 0.8561 -6.5691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299155306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = 87.408830 kcal Electronic energy + Delta-G solvation = -29573.811653 eV Core-core repulsion = 25522.575208 eV Total energy + Delta-G solvation = -4051.236446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.58592 -41.08849 -40.05506 -39.11741 -37.46393 -36.65416 -34.88598 -33.92213 -33.17653 -32.18273 -31.40779 -30.70894 -27.67085 -26.58758 -25.39934 -25.13737 -23.99062 -23.22085 -22.26288 -21.48587 -20.29078 -19.71861 -18.86936 -18.60064 -18.08954 -17.59227 -17.31206 -16.96560 -16.40027 -16.02757 -15.74117 -15.70444 -15.59476 -15.36165 -15.22889 -14.96475 -14.45633 -14.03918 -13.85707 -13.77507 -13.56907 -13.20491 -13.12133 -12.69633 -12.61394 -12.52194 -12.31016 -12.22949 -12.07681 -12.05162 -11.89902 -11.67398 -11.31595 -10.68294 -10.41876 -10.30381 -10.14730 -9.69054 -9.65051 -9.03908 -8.28905 -5.71622 -0.63377 -0.40144 -0.22790 0.29529 0.56520 1.44468 1.47782 1.56011 2.03152 2.08127 2.37513 2.47080 2.62248 2.86849 3.14355 3.19268 3.25001 3.35511 3.56708 3.72615 3.87064 3.99979 4.15030 4.16941 4.20675 4.31897 4.44511 4.56062 4.61789 4.67260 4.79833 4.90993 4.92302 5.10274 5.20618 5.29695 5.32465 5.39547 5.48579 5.57504 5.66709 5.75165 6.09685 6.13058 6.20597 6.61313 6.65449 7.16380 7.27584 7.53086 8.16727 8.65458 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.003377 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.388037 B = 8290.588823 C = 9653.944350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.098 3.902 4 N -0.441 5.441 5 C -0.345 4.345 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.848 5.848 9 Si 0.969 3.031 10 H -0.281 1.281 11 H -0.262 1.262 12 H -0.286 1.286 13 C 0.498 3.502 14 O -0.632 6.632 15 C -0.280 4.280 16 C 0.210 3.790 17 N -0.423 5.423 18 H 0.478 0.522 19 N -0.340 5.340 20 C 0.468 3.532 21 N -0.642 5.642 22 C 0.513 3.487 23 O -0.568 6.568 24 C -0.220 4.220 25 C -0.045 4.045 26 C -0.127 4.127 27 C -0.040 4.040 28 C -0.147 4.147 29 C 0.168 3.832 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.277 0.723 38 H 0.277 0.723 39 H 0.134 0.866 40 H 0.174 0.826 41 H 0.191 0.809 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.754 -2.954 -17.883 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C -0.024 4.024 4 N -0.158 5.158 5 C -0.473 4.473 6 H 0.082 0.918 7 C -0.186 4.186 8 N -0.486 5.486 9 Si 0.794 3.206 10 H -0.207 1.207 11 H -0.186 1.186 12 H -0.212 1.212 13 C 0.288 3.712 14 O -0.520 6.520 15 C -0.297 4.297 16 C 0.067 3.933 17 N -0.142 5.142 18 H 0.332 0.668 19 N -0.127 5.127 20 C 0.214 3.786 21 N -0.391 5.391 22 C 0.302 3.698 23 O -0.450 6.450 24 C -0.229 4.229 25 C -0.065 4.065 26 C -0.146 4.146 27 C -0.059 4.059 28 C -0.167 4.167 29 C 0.070 3.930 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.291 0.709 39 H 0.152 0.848 40 H 0.191 0.809 41 H 0.208 0.792 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.229 -2.726 -17.849 27.115 hybrid contribution 0.895 0.238 0.767 1.203 sum -19.333 -2.488 -17.082 25.918 Atomic orbital electron populations 1.21672 0.92856 1.02386 1.02585 1.22049 0.97404 0.96131 1.02162 1.22380 0.78748 0.98754 1.02476 1.43715 1.06764 1.61804 1.03514 1.19432 0.92325 1.51871 0.83641 0.91844 1.25566 0.96966 0.95870 1.00173 1.70138 1.13032 1.37245 1.28183 0.85383 0.78279 0.78737 0.78167 1.20740 1.18604 1.21159 1.17043 0.86462 0.84624 0.83030 1.90679 1.16228 1.57902 1.87219 1.20159 0.93970 1.25492 0.90030 1.25339 0.95985 0.87293 0.84669 1.43766 1.02645 1.67072 1.00725 0.66816 1.45067 1.02630 1.60999 1.04000 1.21523 0.81799 0.85090 0.90194 1.68857 1.15071 1.35464 1.19728 1.19396 0.88925 0.76727 0.84709 1.90673 1.23281 1.49680 1.81334 1.20963 0.92719 1.11547 0.97688 1.21280 1.01552 0.94079 0.89567 1.21726 0.91926 0.99374 1.01535 1.21804 0.97866 0.91825 0.94385 1.21168 0.97928 1.04628 0.92969 1.18154 0.95207 1.01387 0.78232 0.91848 0.92913 0.90245 0.93392 0.90676 0.88449 0.90508 0.91277 0.70859 0.84766 0.80887 0.79193 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.74 71.98 0.70 -1.91 16 2 C -0.14 -4.20 4.69 30.59 0.14 -4.05 16 3 C 0.10 3.53 4.10 86.38 0.35 3.89 16 4 N -0.44 -21.91 2.62 -639.96 -1.68 -23.58 16 5 C -0.35 -19.32 9.47 84.06 0.80 -18.52 16 6 H 0.06 4.04 7.28 -2.91 -0.02 4.02 16 7 C 0.02 0.92 5.00 84.93 0.42 1.34 16 8 N -0.85 -37.78 8.23 21.67 0.18 -37.60 16 9 Si 0.97 40.95 29.62 68.60 2.03 42.99 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.50 26.57 7.59 86.47 0.66 27.22 16 14 O -0.63 -41.80 16.46 -4.36 -0.07 -41.88 16 15 C -0.28 -11.30 6.14 -18.68 -0.11 -11.41 16 16 C 0.21 4.84 8.58 84.23 0.72 5.56 16 17 N -0.42 -6.60 7.02 -56.10 -0.39 -6.99 16 18 H 0.48 1.04 8.61 -213.38 -1.84 -0.80 16 19 N -0.34 -9.39 3.92 -180.45 -0.71 -10.10 16 20 C 0.47 19.77 7.97 136.16 1.09 20.86 16 21 N -0.64 -33.68 10.34 -307.16 -3.18 -36.86 16 22 C 0.51 24.67 7.95 86.83 0.69 25.36 16 23 O -0.57 -30.95 17.46 -5.19 -0.09 -31.04 16 24 C -0.22 -7.33 5.89 -20.03 -0.12 -7.45 16 25 C -0.05 -1.11 9.67 22.43 0.22 -0.90 16 26 C -0.13 -1.62 10.02 22.29 0.22 -1.39 16 27 C -0.04 -0.31 10.02 22.32 0.22 -0.09 16 28 C -0.15 -1.71 9.86 22.34 0.22 -1.49 16 29 C 0.17 4.18 6.66 38.80 0.26 4.44 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 0.80 7.32 -2.39 -0.02 0.79 16 33 H 0.05 1.33 6.29 -2.39 -0.02 1.31 16 34 H 0.07 2.98 6.25 -2.39 -0.01 2.96 16 35 H 0.10 3.85 5.82 -2.38 -0.01 3.84 16 36 H 0.08 2.10 4.77 -2.39 -0.01 2.08 16 37 H 0.28 11.50 8.31 -92.71 -0.77 10.73 16 38 H 0.28 4.81 2.12 -2.91 -0.01 4.80 16 39 H 0.13 3.51 7.81 -2.91 -0.02 3.48 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.18 0.36 7.71 -2.91 -0.02 0.33 16 Total: -1.00 -102.01 345.05 1.86 -100.15 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -0.72 Total: 3.46 kcal Atomic # 6 Polarization: 34.97 SS G_CDS: 6.48 Total: 41.45 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -5.78 Total: -115.14 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -0.16 Total: -72.92 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.99 kcal Total: -102.01 1.86 -100.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299155306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.560 kcal (2) G-P(sol) polarization free energy of solvation -102.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds