Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46845 * 2 1 4 4 H 1.08999 * 109.47305 * 54.99585 * 3 2 1 5 5 C 1.52998 * 109.47016 * 174.99594 * 3 2 1 6 6 N 1.46505 * 109.47040 * 294.99507 * 3 2 1 7 7 S 1.65605 * 119.99826 * 145.00190 * 6 3 2 8 8 O 1.42100 * 106.40154 * 178.54224 * 7 6 3 9 9 O 1.42099 * 106.40278 * 311.46077 * 7 6 3 10 10 C 1.76203 * 107.21820 * 65.00045 * 7 6 3 11 11 C 1.38371 * 119.84617 * 269.72465 * 10 7 6 12 12 C 1.37933 * 120.15013 * 179.72268 * 11 10 7 13 13 C 1.39652 * 119.84384 * 0.57121 * 12 11 10 14 14 C 1.47724 * 120.14892 * 179.68128 * 13 12 11 15 15 O 1.21588 * 120.00246 * 139.01663 * 14 13 12 16 16 N 1.34778 * 120.00273 * 319.01872 * 14 13 12 17 17 C 1.46497 * 120.00009 * 7.78242 * 16 14 13 18 18 C 1.36869 * 120.00043 * 187.78897 * 16 14 13 19 19 H 1.07999 * 119.99977 * 317.58714 * 18 16 14 20 20 C 1.39050 * 120.00353 * 137.59271 * 18 16 14 21 21 N 1.31369 * 120.00108 * 44.63632 * 20 18 16 22 22 Si 1.86800 * 120.00205 * 224.64309 * 20 18 16 23 23 H 1.48506 * 109.47039 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47348 * 119.99389 * 22 20 18 25 25 H 1.48501 * 109.47106 * 239.99711 * 22 20 18 26 26 C 1.39643 * 119.70025 * 359.70394 * 13 12 11 27 27 C 1.37938 * 119.84591 * 0.02562 * 26 13 12 28 28 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47378 * 300.00154 * 1 2 3 30 30 H 1.09002 * 109.46851 * 60.00749 * 1 2 3 31 31 H 1.08993 * 109.47378 * 239.99846 * 2 1 3 32 32 H 1.08994 * 109.46692 * 119.99553 * 2 1 3 33 33 H 1.09004 * 109.46658 * 60.00017 * 5 3 2 34 34 H 1.09010 * 109.47111 * 179.97438 * 5 3 2 35 35 H 1.08994 * 109.47654 * 299.99998 * 5 3 2 36 36 H 0.96991 * 120.00006 * 325.00571 * 6 3 2 37 37 H 1.08001 * 119.92493 * 0.02562 * 11 10 7 38 38 H 1.07998 * 120.08269 * 180.25839 * 12 11 10 39 39 H 1.08997 * 109.47061 * 98.66016 * 17 16 14 40 40 H 1.09004 * 109.47518 * 218.66408 * 17 16 14 41 41 H 1.09007 * 109.47005 * 338.65788 * 17 16 14 42 42 H 0.96994 * 119.99800 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.07569 * 179.97438 * 26 13 12 44 44 H 1.07998 * 119.92749 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 7 1.6524 2.0974 -1.2519 7 16 1.2557 3.7052 -1.2569 8 8 0.9650 4.0426 -2.6063 9 8 0.3334 3.8943 -0.1926 10 6 2.7085 4.6023 -0.8216 11 6 2.9700 4.8866 0.5071 12 6 4.1082 5.5835 0.8554 13 6 4.9915 6.0126 -0.1376 14 6 6.2090 6.7655 0.2273 15 8 7.2610 6.5298 -0.3349 16 7 6.1537 7.7138 1.1835 17 6 4.9349 7.8819 1.9788 18 6 7.2362 8.5197 1.4115 19 1 8.2303 8.0977 1.4251 20 6 7.0562 9.8817 1.6258 21 7 6.1045 10.3002 2.4288 22 14 8.1676 11.1165 0.7717 23 1 9.1528 10.3944 -0.0729 24 1 7.3474 12.0138 -0.0812 25 1 8.8866 11.9229 1.7905 26 6 4.7184 5.7272 -1.4769 27 6 3.5793 5.0246 -1.8106 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9994 0.9053 -0.7160 34 1 3.9281 2.4721 0.1254 35 1 3.8532 0.9571 1.0572 36 1 1.6282 1.5893 -2.0777 37 1 2.2838 4.5579 1.2736 38 1 4.3134 5.8012 1.8931 39 1 5.0522 7.3728 2.9354 40 1 4.7573 8.9434 2.1515 41 1 4.0884 7.4547 1.4411 42 1 5.9787 11.2503 2.5779 43 1 5.3971 6.0565 -2.2498 44 1 3.3666 4.8034 -2.8461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299512682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -67.664280 kcal Electronic energy + Delta-G solvation = -27900.148779 eV Core-core repulsion = 23945.339059 eV Total energy + Delta-G solvation = -3954.809720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -39.68311 -37.81442 -37.57056 -37.10877 -35.89412 -34.88229 -32.40575 -32.02377 -31.02533 -30.85971 -29.67171 -26.54353 -25.28811 -23.97791 -23.17749 -22.57345 -21.39290 -19.86949 -19.59385 -18.13591 -17.49767 -17.15282 -16.56820 -16.23514 -15.59104 -15.01654 -14.70946 -14.58676 -14.47786 -14.34462 -14.21555 -13.90073 -13.72704 -13.52175 -13.31249 -13.11939 -12.57576 -12.43744 -12.26120 -12.15982 -12.09584 -11.98531 -11.88096 -11.77715 -11.69627 -11.49761 -11.22443 -11.10645 -10.97553 -10.86515 -10.79267 -10.47126 -10.33045 -9.77011 -9.08609 -8.83385 -8.74300 -8.57915 -7.84188 -6.83227 -4.02729 0.33172 0.78975 1.48398 2.86823 3.03641 3.20157 3.28081 3.40875 3.71091 3.92842 4.13535 4.29525 4.38207 4.46764 4.70208 4.75295 4.77300 4.92662 4.98481 5.06744 5.17710 5.33994 5.37723 5.43082 5.46880 5.56918 5.61916 5.66898 5.68741 5.82167 5.97974 6.00398 6.06136 6.07736 6.14575 6.23288 6.33098 6.51595 6.63060 6.76660 6.96270 7.03230 7.44711 8.11405 8.31829 8.94263 9.12813 9.79339 10.18891 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002783 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.904274 B =10058.088681 C =10191.694118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.125 4.125 3 C 0.145 3.855 4 H 0.093 0.907 5 C -0.179 4.179 6 N -1.112 6.112 7 S 2.697 3.303 8 O -0.964 6.964 9 O -0.960 6.960 10 C -0.683 4.683 11 C -0.029 4.029 12 C -0.128 4.128 13 C -0.030 4.030 14 C 0.469 3.531 15 O -0.577 6.577 16 N -0.424 5.424 17 C 0.037 3.963 18 C -0.347 4.347 19 H 0.100 0.900 20 C 0.077 3.923 21 N -0.815 5.815 22 Si 0.888 3.112 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.280 1.280 26 C -0.104 4.104 27 C -0.024 4.024 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.416 0.584 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.040 0.960 40 H 0.117 0.883 41 H 0.051 0.949 42 H 0.276 0.724 43 H 0.136 0.864 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 -16.542 -2.965 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C 0.038 3.962 4 H 0.111 0.889 5 C -0.238 4.238 6 N -0.871 5.871 7 S 2.788 3.212 8 O -0.954 6.954 9 O -0.949 6.949 10 C -0.772 4.772 11 C -0.049 4.049 12 C -0.147 4.147 13 C -0.035 4.035 14 C 0.258 3.742 15 O -0.462 6.462 16 N -0.141 5.141 17 C -0.106 4.106 18 C -0.473 4.473 19 H 0.118 0.882 20 C -0.135 4.135 21 N -0.446 5.446 22 Si 0.712 3.288 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.206 1.206 26 C -0.125 4.125 27 C -0.044 4.044 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.059 0.941 40 H 0.135 0.865 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.610 -15.987 -3.082 19.997 hybrid contribution 1.184 0.660 -0.355 1.401 sum -10.426 -15.327 -3.438 18.853 Atomic orbital electron populations 1.21800 0.95347 1.01568 1.02625 1.21785 0.96559 0.95112 1.02942 1.20908 0.95007 0.94811 0.85465 0.88866 1.22416 0.95068 1.03636 1.02688 1.55638 1.86709 1.28311 1.16467 1.01673 0.73884 0.72264 0.73369 1.93579 1.83748 1.82589 1.35524 1.93575 1.59160 1.84985 1.57227 1.30650 1.23538 1.21528 1.01477 1.20747 0.96059 0.94195 0.93880 1.21790 0.94247 0.98267 1.00443 1.20774 0.94859 0.93699 0.94124 1.18053 0.87838 0.85321 0.82940 1.90638 1.30359 1.68870 1.56340 1.43391 1.13347 1.29994 1.27333 1.23019 0.86746 1.07104 0.93685 1.19157 0.87782 0.87673 1.52653 0.88224 1.25586 0.96480 0.98189 0.93217 1.70025 1.32984 1.16929 1.24695 0.86564 0.81263 0.80046 0.80976 1.18352 1.20070 1.20630 1.21271 0.96997 0.98450 0.95734 1.20729 0.91942 0.93483 0.98209 0.92697 0.92214 0.92495 0.91299 0.90519 0.91841 0.91387 0.91252 0.74924 0.84474 0.83929 0.94137 0.86501 0.93079 0.91357 0.84574 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.80 37.16 0.36 -0.69 16 2 C -0.12 -0.77 5.53 -26.73 -0.15 -0.92 16 3 C 0.14 1.13 2.91 -67.93 -0.20 0.93 16 4 H 0.09 0.76 7.50 -51.93 -0.39 0.37 16 5 C -0.18 -1.45 9.52 37.16 0.35 -1.10 16 6 N -1.11 -9.40 4.93 -4.89 -0.02 -9.42 16 7 S 2.70 32.48 5.72 -107.50 -0.61 31.87 16 8 O -0.96 -13.95 17.27 -57.17 -0.99 -14.94 16 9 O -0.96 -13.66 16.60 -57.17 -0.95 -14.61 16 10 C -0.68 -9.25 5.06 -39.48 -0.20 -9.45 16 11 C -0.03 -0.41 8.58 -39.64 -0.34 -0.75 16 12 C -0.13 -2.09 7.36 -39.17 -0.29 -2.37 16 13 C -0.03 -0.59 5.30 -104.97 -0.56 -1.14 16 14 C 0.47 11.39 7.27 -12.38 -0.09 11.30 16 15 O -0.58 -15.91 16.84 5.29 0.09 -15.82 16 16 N -0.42 -10.58 2.99 -123.32 -0.37 -10.95 16 17 C 0.04 0.80 8.58 59.85 0.51 1.31 16 18 C -0.35 -9.40 8.73 -15.00 -0.13 -9.53 16 19 H 0.10 2.84 7.94 -52.49 -0.42 2.43 16 20 C 0.08 1.94 5.32 -17.45 -0.09 1.85 16 21 N -0.81 -20.19 10.81 55.50 0.60 -19.59 16 22 Si 0.89 19.69 29.69 -169.99 -5.05 14.65 16 23 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.10 -1.80 9.65 -39.17 -0.38 -2.17 16 27 C -0.02 -0.35 9.50 -39.64 -0.38 -0.72 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.68 6.18 -51.92 -0.32 0.36 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.42 2.65 8.84 -34.47 -0.30 2.34 16 37 H 0.14 1.57 7.60 -52.49 -0.40 1.17 16 38 H 0.14 2.23 5.74 -52.49 -0.30 1.93 16 39 H 0.04 0.81 7.79 -51.93 -0.40 0.41 16 40 H 0.12 2.72 5.14 -51.93 -0.27 2.46 16 41 H 0.05 0.96 4.59 -51.92 -0.24 0.72 16 42 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 43 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.14 1.66 7.60 -52.49 -0.40 1.26 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -33.07 371.17 -9.21 -42.28 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.94 Total: 4.39 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.57 Total: -13.45 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.21 Total: -39.96 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.85 Total: -45.37 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.05 Total: 14.65 kcal Atomic # 16 Polarization: 32.48 SS G_CDS: -0.61 Total: 31.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.07 -9.21 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299512682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.382 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds