Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 H 1.08993 * 109.47207 * 54.99729 * 3 2 1 5 5 C 1.53006 * 109.46947 * 175.00224 * 3 2 1 6 6 N 1.46504 * 109.47219 * 294.99979 * 3 2 1 7 7 C 1.34776 * 120.00054 * 154.99954 * 6 3 2 8 8 O 1.21552 * 120.00064 * 0.02562 * 7 6 3 9 9 C 1.47843 * 119.99534 * 180.27634 * 7 6 3 10 10 C 1.39590 * 120.15185 * 359.72932 * 9 7 6 11 11 C 1.37937 * 119.85769 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.14303 * 359.96797 * 11 10 9 13 13 C 1.50699 * 119.85322 * 180.02562 * 12 11 10 14 14 C 1.38336 * 120.29350 * 0.02990 * 12 11 10 15 15 S 1.76206 * 119.92718 * 179.97438 * 14 12 11 16 16 O 1.42106 * 106.40114 * 176.32628 * 15 14 12 17 17 O 1.42098 * 106.40117 * 309.24450 * 15 14 12 18 18 N 1.65603 * 107.21835 * 62.78577 * 15 14 12 19 19 C 1.36936 * 119.99596 * 65.06141 * 18 15 14 20 20 H 1.07993 * 120.00470 * 354.94831 * 19 18 15 21 21 C 1.38816 * 119.99635 * 174.95322 * 19 18 15 22 22 N 1.31622 * 119.99748 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47342 * 59.99516 * 23 21 19 25 25 H 1.48497 * 109.47523 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47056 * 299.99828 * 23 21 19 27 27 C 1.37979 * 120.14649 * 359.73817 * 14 12 11 28 28 H 1.08991 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46715 * 300.00274 * 1 2 3 30 30 H 1.08999 * 109.46934 * 59.99474 * 1 2 3 31 31 H 1.09002 * 109.46715 * 239.99726 * 2 1 3 32 32 H 1.08999 * 109.46934 * 120.00526 * 2 1 3 33 33 H 1.08998 * 109.46520 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.46990 * 299.99981 * 5 3 2 35 35 H 1.08995 * 109.46751 * 60.00123 * 5 3 2 36 36 H 0.97003 * 119.99524 * 335.00178 * 6 3 2 37 37 H 1.08005 * 120.07303 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.92595 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47160 * 86.16586 * 13 12 11 40 40 H 1.09005 * 109.47498 * 206.16118 * 13 12 11 41 41 H 1.09002 * 109.47538 * 326.16060 * 13 12 11 42 42 H 0.96997 * 119.99788 * 245.06316 * 18 15 14 43 43 H 0.97004 * 119.99600 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.07415 * 180.25439 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5650 1.4441 0.1257 6 7 1.6526 2.0975 -1.2518 7 6 1.5258 3.4384 -1.2996 8 8 1.7335 4.1044 -0.3042 9 6 1.1288 4.0988 -2.5613 10 6 0.8900 3.3371 -3.7065 11 6 0.5194 3.9595 -4.8803 12 6 0.3835 5.3358 -4.9241 13 6 -0.0223 6.0090 -6.2099 14 6 0.6187 6.0966 -3.7930 15 16 0.4435 7.8487 -3.8598 16 8 0.6642 8.3247 -2.5392 17 8 1.2009 8.2852 -4.9801 18 7 -1.1421 8.1696 -4.2137 19 6 -2.1249 7.8288 -3.3231 20 1 -1.8754 7.2783 -2.4281 21 6 -3.4419 8.1909 -3.5707 22 7 -3.7459 8.8622 -4.6613 23 14 -4.7827 7.7254 -2.3563 24 1 -4.4860 8.3333 -1.0343 25 1 -6.0915 8.2257 -2.8480 26 1 -4.8364 6.2476 -2.2207 27 6 0.9853 5.4861 -2.6112 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9284 2.4718 0.1252 34 1 3.8533 0.9568 1.0570 35 1 3.9995 0.9051 -0.7162 36 1 1.4872 1.5660 -2.0463 37 1 0.9952 2.2627 -3.6734 38 1 0.3339 3.3712 -5.7668 39 1 -1.1095 6.0212 -6.2862 40 1 0.3540 7.0320 -6.2190 41 1 0.3952 5.4609 -7.0546 42 1 -1.3747 8.5990 -5.0518 43 1 -4.6662 9.1156 -4.8342 44 1 1.1646 6.0809 -1.7276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339117805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -97.354338 kcal Electronic energy + Delta-G solvation = -27885.013642 eV Core-core repulsion = 23928.916464 eV Total energy + Delta-G solvation = -3956.097178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.28017 -38.59575 -36.56396 -36.26020 -34.83725 -34.68500 -33.18602 -32.11229 -30.96301 -30.92997 -29.98468 -27.21670 -24.51621 -24.21348 -22.96480 -22.70324 -21.08545 -20.53062 -18.75933 -18.20374 -17.78032 -16.70855 -16.51904 -15.71403 -15.38425 -15.28572 -15.02778 -14.57498 -14.34155 -14.10672 -14.01306 -13.95211 -13.66960 -13.61518 -13.46086 -13.36316 -12.55757 -12.27431 -12.08972 -12.02920 -11.89697 -11.78573 -11.57014 -11.39761 -11.33506 -11.29632 -11.12170 -11.01027 -10.98204 -10.80762 -10.57182 -10.31420 -10.07352 -10.01446 -9.73339 -9.24719 -9.10532 -8.57942 -8.28111 -6.44725 -3.91399 0.85219 1.27972 1.49969 2.85095 3.04057 3.20341 3.23513 3.28029 3.80952 4.05433 4.37919 4.41555 4.65301 4.69274 4.73327 4.73555 4.79196 4.96476 5.10245 5.13360 5.16317 5.28385 5.32435 5.39782 5.47142 5.54086 5.61986 5.63048 5.74349 5.81569 5.88106 5.92922 6.00196 6.00500 6.02284 6.28149 6.29535 6.37485 6.43711 6.58988 6.97910 7.02732 7.40771 7.50014 8.20266 8.65859 8.79466 9.22331 10.71389 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.003685 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.571998 B = 7595.973595 C = 8571.109521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.139 3.861 4 H 0.090 0.910 5 C -0.164 4.164 6 N -0.726 5.726 7 C 0.564 3.436 8 O -0.532 6.532 9 C -0.175 4.175 10 C -0.046 4.046 11 C -0.156 4.156 12 C 0.053 3.947 13 C -0.170 4.170 14 C -0.672 4.672 15 S 2.632 3.368 16 O -0.965 6.965 17 O -0.994 6.994 18 N -0.949 5.949 19 C -0.284 4.284 20 H 0.101 0.899 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 0.920 3.080 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.039 3.961 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.410 0.590 43 H 0.274 0.726 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -17.961 1.361 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.035 3.965 4 H 0.108 0.892 5 C -0.223 4.223 6 N -0.379 5.379 7 C 0.353 3.647 8 O -0.409 6.409 9 C -0.179 4.179 10 C -0.065 4.065 11 C -0.175 4.175 12 C 0.051 3.949 13 C -0.226 4.226 14 C -0.751 4.751 15 S 2.720 3.280 16 O -0.955 6.955 17 O -0.983 6.983 18 N -0.703 5.703 19 C -0.422 4.422 20 H 0.119 0.881 21 C -0.172 4.172 22 N -0.525 5.525 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.199 1.199 27 C 0.019 3.981 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.086 -16.968 2.309 18.937 hybrid contribution -1.216 -1.355 -0.314 1.848 sum 6.870 -18.323 1.995 19.670 Atomic orbital electron populations 1.21791 0.95177 1.01674 1.02592 1.21835 0.96688 0.95340 1.02948 1.21017 0.94946 0.92971 0.87548 0.89193 1.22190 0.95379 1.02873 1.01824 1.45981 1.71512 1.06808 1.13595 1.18284 0.76485 0.81871 0.88087 1.90782 1.50075 1.64065 1.36015 1.19888 1.09456 0.94818 0.93756 1.21307 0.94116 0.98837 0.92225 1.21030 1.03842 0.94365 0.98227 1.19740 0.87821 0.93415 0.93889 1.21602 1.03681 1.03710 0.93584 1.31953 1.13392 1.31308 0.98477 1.05269 0.73951 0.75218 0.73520 1.93495 1.85402 1.78480 1.38166 1.93402 1.71100 1.81512 1.52267 1.51577 1.22873 1.66164 1.29656 1.19197 0.87743 1.35038 1.00176 0.88082 1.25132 0.97878 0.96960 0.97233 1.69681 1.20344 1.37207 1.25296 0.86089 0.79746 0.78940 0.80562 1.19508 1.20744 1.19921 1.21066 0.87197 0.93222 0.96631 0.92553 0.92413 0.92436 0.91487 0.90371 0.91826 0.91667 0.92559 0.76763 0.85885 0.85136 0.88663 0.87955 0.90444 0.75407 0.91652 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.80 37.16 0.36 -0.79 16 2 C -0.13 -0.88 5.47 -26.73 -0.15 -1.02 16 3 C 0.14 1.33 2.57 -67.93 -0.17 1.16 16 4 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 5 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 6 N -0.73 -7.85 4.48 -54.75 -0.25 -8.09 16 7 C 0.56 8.68 7.74 -12.33 -0.10 8.59 16 8 O -0.53 -10.12 16.01 5.32 0.09 -10.03 16 9 C -0.18 -2.81 5.87 -104.97 -0.62 -3.43 16 10 C -0.05 -0.59 9.54 -39.19 -0.37 -0.97 16 11 C -0.16 -2.14 9.70 -39.64 -0.38 -2.53 16 12 C 0.05 0.89 5.88 -104.54 -0.61 0.28 16 13 C -0.17 -2.67 9.33 36.01 0.34 -2.33 16 14 C -0.67 -13.11 5.81 -39.64 -0.23 -13.34 16 15 S 2.63 58.17 4.93 -107.50 -0.53 57.64 16 16 O -0.97 -23.99 16.67 -57.17 -0.95 -24.95 16 17 O -0.99 -22.46 15.55 -57.17 -0.89 -23.34 16 18 N -0.95 -22.22 5.43 31.50 0.17 -22.05 16 19 C -0.28 -7.13 9.63 -15.06 -0.15 -7.28 16 20 H 0.10 2.49 7.82 -52.49 -0.41 2.08 16 21 C 0.03 0.87 5.50 -17.43 -0.10 0.78 16 22 N -0.88 -22.99 13.06 55.49 0.72 -22.27 16 23 Si 0.92 19.87 29.55 -169.99 -5.02 14.84 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C 0.04 0.74 9.09 -39.18 -0.36 0.39 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 3.21 6.64 -40.82 -0.27 2.94 16 37 H 0.12 1.05 6.41 -52.48 -0.34 0.71 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.10 1.80 4.80 -51.93 -0.25 1.56 16 41 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 42 H 0.41 9.56 8.04 -34.47 -0.28 9.28 16 43 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 44 H 0.15 3.06 6.92 -52.48 -0.36 2.70 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.13 378.00 -9.21 -41.34 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.06 Total: 12.82 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.18 Total: -21.60 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.65 Total: -52.41 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -1.76 Total: -58.32 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.53 Total: 57.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.13 -9.21 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339117805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.014 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds