Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 H 1.08993 * 109.47207 * 54.99729 * 3 2 1 5 5 C 1.53006 * 109.46947 * 175.00224 * 3 2 1 6 6 N 1.46504 * 109.47219 * 294.99979 * 3 2 1 7 7 C 1.34776 * 120.00054 * 154.99954 * 6 3 2 8 8 O 1.21552 * 120.00064 * 0.02562 * 7 6 3 9 9 C 1.47843 * 119.99534 * 180.27634 * 7 6 3 10 10 C 1.39590 * 120.15185 * 359.72932 * 9 7 6 11 11 C 1.37937 * 119.85769 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.14303 * 359.96797 * 11 10 9 13 13 C 1.50699 * 119.85322 * 180.02562 * 12 11 10 14 14 C 1.38336 * 120.29350 * 0.02990 * 12 11 10 15 15 S 1.76206 * 119.92718 * 179.97438 * 14 12 11 16 16 O 1.42106 * 106.40114 * 176.32628 * 15 14 12 17 17 O 1.42098 * 106.40117 * 309.24450 * 15 14 12 18 18 N 1.65603 * 107.21835 * 62.78577 * 15 14 12 19 19 C 1.36936 * 119.99596 * 65.06141 * 18 15 14 20 20 H 1.07993 * 120.00470 * 354.94831 * 19 18 15 21 21 C 1.38816 * 119.99635 * 174.95322 * 19 18 15 22 22 N 1.31622 * 119.99748 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47342 * 59.99516 * 23 21 19 25 25 H 1.48497 * 109.47523 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47056 * 299.99828 * 23 21 19 27 27 C 1.37979 * 120.14649 * 359.73817 * 14 12 11 28 28 H 1.08991 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46715 * 300.00274 * 1 2 3 30 30 H 1.08999 * 109.46934 * 59.99474 * 1 2 3 31 31 H 1.09002 * 109.46715 * 239.99726 * 2 1 3 32 32 H 1.08999 * 109.46934 * 120.00526 * 2 1 3 33 33 H 1.08998 * 109.46520 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.46990 * 299.99981 * 5 3 2 35 35 H 1.08995 * 109.46751 * 60.00123 * 5 3 2 36 36 H 0.97003 * 119.99524 * 335.00178 * 6 3 2 37 37 H 1.08005 * 120.07303 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.92595 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47160 * 86.16586 * 13 12 11 40 40 H 1.09005 * 109.47498 * 206.16118 * 13 12 11 41 41 H 1.09002 * 109.47538 * 326.16060 * 13 12 11 42 42 H 0.96997 * 119.99788 * 245.06316 * 18 15 14 43 43 H 0.97004 * 119.99600 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.07415 * 180.25439 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5650 1.4441 0.1257 6 7 1.6526 2.0975 -1.2518 7 6 1.5258 3.4384 -1.2996 8 8 1.7335 4.1044 -0.3042 9 6 1.1288 4.0988 -2.5613 10 6 0.8900 3.3371 -3.7065 11 6 0.5194 3.9595 -4.8803 12 6 0.3835 5.3358 -4.9241 13 6 -0.0223 6.0090 -6.2099 14 6 0.6187 6.0966 -3.7930 15 16 0.4435 7.8487 -3.8598 16 8 0.6642 8.3247 -2.5392 17 8 1.2009 8.2852 -4.9801 18 7 -1.1421 8.1696 -4.2137 19 6 -2.1249 7.8288 -3.3231 20 1 -1.8754 7.2783 -2.4281 21 6 -3.4419 8.1909 -3.5707 22 7 -3.7459 8.8622 -4.6613 23 14 -4.7827 7.7254 -2.3563 24 1 -4.4860 8.3333 -1.0343 25 1 -6.0915 8.2257 -2.8480 26 1 -4.8364 6.2476 -2.2207 27 6 0.9853 5.4861 -2.6112 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9284 2.4718 0.1252 34 1 3.8533 0.9568 1.0570 35 1 3.9995 0.9051 -0.7162 36 1 1.4872 1.5660 -2.0463 37 1 0.9952 2.2627 -3.6734 38 1 0.3339 3.3712 -5.7668 39 1 -1.1095 6.0212 -6.2862 40 1 0.3540 7.0320 -6.2190 41 1 0.3952 5.4609 -7.0546 42 1 -1.3747 8.5990 -5.0518 43 1 -4.6662 9.1156 -4.8342 44 1 1.1646 6.0809 -1.7276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339117805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -120.762572 kcal Electronic energy + Delta-G solvation = -27886.028699 eV Core-core repulsion = 23928.916464 eV Total energy + Delta-G solvation = -3957.112235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.46413 -39.81400 -38.22768 -37.48159 -36.80564 -36.50265 -34.39438 -33.16033 -32.76366 -32.21109 -30.74173 -28.44115 -26.41089 -25.01304 -24.27558 -23.76470 -22.05598 -21.65716 -20.36445 -20.02392 -19.28076 -18.38080 -17.66391 -17.19081 -16.83409 -16.51032 -16.35143 -16.13912 -15.82909 -15.39691 -15.29753 -14.90344 -14.86859 -14.67764 -14.58114 -14.34810 -13.94233 -13.52919 -13.40964 -13.24888 -13.14186 -13.05191 -13.01523 -12.91227 -12.69510 -12.67479 -12.61591 -12.33369 -12.28252 -12.07373 -11.97536 -11.85620 -11.65091 -11.53468 -11.07526 -10.47910 -10.24823 -10.14950 -9.82449 -8.28943 -5.88309 -0.46148 -0.30185 -0.03482 1.45115 1.49161 1.55347 1.62238 2.03532 2.25876 2.52523 2.64630 2.87915 3.21684 3.45887 3.60616 3.76012 3.76069 3.82421 3.94649 4.07068 4.18161 4.28272 4.42115 4.48584 4.59093 4.61521 4.74362 4.74723 4.77744 4.83135 4.94703 5.00499 5.04339 5.08340 5.11720 5.16255 5.18070 5.26900 5.29868 5.41546 5.49990 5.65344 5.72793 6.45362 6.78679 6.95059 7.12602 7.35279 8.89224 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.003685 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.571998 B = 7595.973595 C = 8571.109521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C 0.134 3.866 4 H 0.062 0.938 5 C -0.160 4.160 6 N -0.701 5.701 7 C 0.561 3.439 8 O -0.581 6.581 9 C -0.181 4.181 10 C -0.019 4.019 11 C -0.142 4.142 12 C 0.041 3.959 13 C -0.172 4.172 14 C -0.688 4.688 15 S 2.680 3.320 16 O -1.004 7.004 17 O -0.997 6.997 18 N -0.970 5.970 19 C -0.317 4.317 20 H 0.093 0.907 21 C -0.007 4.007 22 N -0.927 5.927 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.277 1.277 26 H -0.265 1.265 27 C 0.012 3.988 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.409 0.591 43 H 0.272 0.728 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -23.100 0.049 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.218 4.218 6 N -0.354 5.354 7 C 0.349 3.651 8 O -0.462 6.462 9 C -0.185 4.185 10 C -0.037 4.037 11 C -0.160 4.160 12 C 0.040 3.960 13 C -0.228 4.228 14 C -0.775 4.775 15 S 2.772 3.228 16 O -0.995 6.995 17 O -0.987 6.987 18 N -0.725 5.725 19 C -0.449 4.449 20 H 0.111 0.889 21 C -0.209 4.209 22 N -0.569 5.569 23 Si 0.797 3.203 24 H -0.202 1.202 25 H -0.201 1.201 26 H -0.189 1.189 27 C -0.008 4.008 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.199 0.801 38 H 0.200 0.800 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.245 0.755 43 H 0.081 0.919 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.978 -22.078 0.994 23.855 hybrid contribution -1.133 0.026 0.110 1.138 sum 7.846 -22.052 1.104 23.432 Atomic orbital electron populations 1.21820 0.95773 1.02379 1.01536 1.21798 0.95987 0.93014 1.04896 1.21186 0.95472 0.94410 0.85907 0.91987 1.22154 0.94649 1.01339 1.03698 1.45832 1.69501 1.05172 1.14923 1.18311 0.76359 0.83194 0.87237 1.90768 1.52427 1.65453 1.37515 1.20026 1.09326 0.93578 0.95536 1.21922 0.90259 1.01377 0.90127 1.21575 1.01330 0.92807 1.00250 1.20084 0.87596 0.95330 0.93023 1.21650 1.03750 1.02809 0.94605 1.30936 1.18026 1.27900 1.00646 1.02100 0.72830 0.75552 0.72351 1.93462 1.85730 1.79919 1.40347 1.93425 1.70746 1.82168 1.52344 1.51004 1.21707 1.70478 1.29315 1.19176 0.88261 1.35806 1.01704 0.88916 1.25748 0.99437 0.97057 0.98637 1.69764 1.20395 1.39896 1.26833 0.85305 0.77722 0.78998 0.78322 1.20196 1.20147 1.18937 1.20922 0.89207 0.95182 0.95518 0.90960 0.94066 0.92992 0.89061 0.88856 0.95016 0.89907 0.90603 0.74631 0.80086 0.80045 0.88814 0.90542 0.86273 0.75508 0.91901 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.80 71.98 0.71 -1.14 16 2 C -0.12 -1.12 5.47 30.59 0.17 -0.95 16 3 C 0.13 2.25 2.57 44.99 0.12 2.37 16 4 H 0.06 1.42 7.58 -2.39 -0.02 1.41 16 5 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 6 N -0.70 -12.99 4.48 -445.41 -2.00 -14.98 16 7 C 0.56 16.63 7.74 86.79 0.67 17.30 16 8 O -0.58 -22.82 16.01 -3.88 -0.06 -22.88 16 9 C -0.18 -5.44 5.87 -20.09 -0.12 -5.56 16 10 C -0.02 -0.38 9.54 22.53 0.21 -0.16 16 11 C -0.14 -3.09 9.70 22.23 0.22 -2.88 16 12 C 0.04 1.30 5.88 -19.81 -0.12 1.18 16 13 C -0.17 -5.04 9.33 71.24 0.66 -4.37 16 14 C -0.69 -26.94 5.81 22.23 0.13 -26.81 16 15 S 2.68 123.45 4.93 -56.49 -0.28 123.17 16 16 O -1.00 -52.96 16.67 -128.00 -2.13 -55.09 16 17 O -1.00 -46.07 15.55 -128.00 -1.99 -48.06 16 18 N -0.97 -47.82 5.43 -54.27 -0.29 -48.11 16 19 C -0.32 -16.77 9.63 84.03 0.81 -15.96 16 20 H 0.09 4.88 7.82 -2.91 -0.02 4.86 16 21 C -0.01 -0.39 5.50 84.86 0.47 0.08 16 22 N -0.93 -50.44 13.06 21.65 0.28 -50.16 16 23 Si 0.97 42.14 29.55 68.60 2.03 44.17 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 27 C 0.01 0.48 9.09 22.53 0.20 0.68 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.66 7.75 -2.39 -0.02 0.64 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.41 4.43 6.64 -92.71 -0.62 3.82 16 37 H 0.18 1.59 6.41 -2.91 -0.02 1.57 16 38 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.08 2.66 4.80 -2.38 -0.01 2.64 16 41 H 0.12 2.44 8.11 -2.39 -0.02 2.42 16 42 H 0.41 20.23 8.04 -96.75 -0.78 19.45 16 43 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.12 5.37 6.92 -2.91 -0.02 5.35 16 Total: -1.00 -77.17 378.00 0.02 -77.16 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.35 Total: 32.84 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 4.81 Total: -38.04 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -2.01 Total: -113.26 kcal Atomic # 8 Polarization: -121.85 SS G_CDS: -4.19 Total: -126.03 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 123.45 SS G_CDS: -0.28 Total: 123.17 kcal Total: -77.17 0.02 -77.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339117805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.607 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds