Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47212 * 2 1 4 4 H 1.09003 * 109.47145 * 304.99512 * 3 2 1 5 5 C 1.53002 * 109.47144 * 185.00114 * 3 2 1 6 6 N 1.46501 * 109.47354 * 65.00015 * 3 2 1 7 7 C 1.34777 * 119.99912 * 205.00142 * 6 3 2 8 8 O 1.21555 * 119.99787 * 359.97438 * 7 6 3 9 9 C 1.47845 * 119.99837 * 179.97438 * 7 6 3 10 10 C 1.39596 * 120.14362 * 359.97438 * 9 7 6 11 11 C 1.37936 * 119.84885 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.14851 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.85430 * 179.97438 * 12 11 10 14 14 C 1.38340 * 120.29066 * 0.26164 * 12 11 10 15 15 S 1.76198 * 119.92584 * 179.74094 * 14 12 11 16 16 O 1.42097 * 106.40204 * 176.30410 * 15 14 12 17 17 O 1.42106 * 106.40406 * 309.22204 * 15 14 12 18 18 N 1.65602 * 107.21820 * 62.76013 * 15 14 12 19 19 C 1.36934 * 119.99927 * 65.09609 * 18 15 14 20 20 H 1.08009 * 119.99849 * 354.94776 * 19 18 15 21 21 C 1.38811 * 120.00391 * 174.94993 * 19 18 15 22 22 N 1.31619 * 119.99532 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00367 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47044 * 59.99992 * 23 21 19 25 25 H 1.48494 * 109.47311 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47047 * 300.00278 * 23 21 19 27 27 C 1.37976 * 120.14289 * 359.48216 * 14 12 11 28 28 H 1.08998 * 109.46965 * 60.00380 * 1 2 3 29 29 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47169 * 300.00434 * 1 2 3 31 31 H 1.09001 * 109.47169 * 239.99566 * 2 1 3 32 32 H 1.09001 * 109.47151 * 120.00114 * 2 1 3 33 33 H 1.09001 * 109.47582 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46795 * 300.00207 * 5 3 2 35 35 H 1.09003 * 109.47582 * 59.99335 * 5 3 2 36 36 H 0.97000 * 119.99679 * 25.00023 * 6 3 2 37 37 H 1.07995 * 120.07246 * 359.95958 * 10 9 7 38 38 H 1.07998 * 119.92214 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47026 * 86.10284 * 13 12 11 40 40 H 1.09000 * 109.47128 * 326.10150 * 13 12 11 41 41 H 1.08997 * 109.47108 * 206.10145 * 13 12 11 42 42 H 0.96994 * 119.99845 * 245.09395 * 18 15 14 43 43 H 0.97007 * 119.99952 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.07048 * 180.25438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0975 1.2518 7 6 1.5256 3.4384 1.2995 8 8 1.7333 4.1043 0.3040 9 6 1.1340 4.0994 2.5626 10 6 0.8943 3.3375 3.7075 11 6 0.5298 3.9605 4.8829 12 6 0.4020 5.3377 4.9289 13 6 0.0028 6.0114 6.2164 14 6 0.6333 6.0981 3.7967 15 16 0.4612 7.8504 3.8644 16 8 0.8457 8.3409 2.5874 17 8 -0.8103 8.1066 4.4448 18 7 1.5880 8.4124 4.9400 19 6 2.9229 8.2783 4.6658 20 1 3.2421 7.7343 3.7889 21 6 3.8659 8.8413 5.5147 22 7 3.4769 9.5036 6.5835 23 14 5.6869 8.6577 5.1410 24 1 5.9849 9.2664 3.8197 25 1 6.4796 9.3436 6.1927 26 1 6.0437 7.2164 5.1138 27 6 1.0037 5.4878 2.6159 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9283 2.4719 -0.1253 34 1 3.9994 0.9051 0.7161 35 1 3.8532 0.9568 -1.0571 36 1 1.4871 1.5661 2.0463 37 1 0.9939 2.2627 3.6729 38 1 0.3436 3.3722 5.7692 39 1 0.8909 6.1945 6.8212 40 1 -0.6844 5.3677 6.7655 41 1 -0.4869 6.9594 5.9938 42 1 1.3024 8.8366 5.7641 43 1 4.1358 9.8974 7.1765 44 1 1.1881 6.0830 1.7338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339117807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -97.320198 kcal Electronic energy + Delta-G solvation = -27868.403542 eV Core-core repulsion = 23912.307845 eV Total energy + Delta-G solvation = -3956.095697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.27999 -38.59577 -36.56645 -36.25994 -34.83713 -34.68558 -33.18834 -32.12008 -30.96421 -30.93102 -29.97978 -27.21558 -24.51600 -24.21776 -22.96566 -22.70856 -21.08791 -20.53039 -18.75960 -18.20365 -17.78172 -16.71656 -16.50675 -15.71575 -15.40946 -15.28195 -15.00644 -14.58086 -14.34674 -14.09705 -14.01655 -13.96692 -13.66937 -13.60555 -13.49883 -13.34499 -12.52900 -12.27609 -12.11846 -12.03102 -11.89038 -11.76866 -11.58458 -11.41830 -11.33527 -11.29612 -11.12054 -11.00992 -10.98369 -10.80773 -10.57103 -10.31413 -10.07322 -10.01426 -9.73296 -9.24571 -9.10542 -8.57926 -8.28114 -6.44718 -3.91348 0.85231 1.27950 1.50029 2.85068 3.04137 3.20449 3.23522 3.28074 3.80989 4.05488 4.37328 4.41575 4.64706 4.69551 4.72503 4.72575 4.78596 4.96486 5.10192 5.13357 5.16874 5.27766 5.32044 5.39819 5.47658 5.54556 5.60280 5.61011 5.74330 5.81272 5.87092 5.91160 6.00198 6.00505 6.04729 6.28189 6.29564 6.37691 6.43741 6.58973 6.97918 7.02702 7.40776 7.49999 8.20278 8.65841 8.79426 9.22334 10.71359 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003594 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.151988 B = 7789.048480 C = 8758.545427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.140 3.860 4 H 0.090 0.910 5 C -0.165 4.165 6 N -0.726 5.726 7 C 0.564 3.436 8 O -0.532 6.532 9 C -0.175 4.175 10 C -0.046 4.046 11 C -0.156 4.156 12 C 0.053 3.947 13 C -0.169 4.169 14 C -0.672 4.672 15 S 2.632 3.368 16 O -0.965 6.965 17 O -0.994 6.994 18 N -0.949 5.949 19 C -0.284 4.284 20 H 0.101 0.899 21 C 0.034 3.966 22 N -0.884 5.884 23 Si 0.920 3.080 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.039 3.961 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.410 0.590 43 H 0.274 0.726 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -18.890 -4.160 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.036 3.964 4 H 0.108 0.892 5 C -0.224 4.224 6 N -0.379 5.379 7 C 0.353 3.647 8 O -0.409 6.409 9 C -0.179 4.179 10 C -0.065 4.065 11 C -0.175 4.175 12 C 0.051 3.949 13 C -0.226 4.226 14 C -0.751 4.751 15 S 2.720 3.280 16 O -0.955 6.955 17 O -0.983 6.983 18 N -0.703 5.703 19 C -0.421 4.421 20 H 0.119 0.881 21 C -0.172 4.172 22 N -0.525 5.525 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.199 1.199 27 C 0.019 3.981 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.702 -18.012 -5.448 19.179 hybrid contribution 1.175 -1.143 0.951 1.895 sum -2.527 -19.156 -4.497 19.838 Atomic orbital electron populations 1.21785 0.95275 1.01635 1.02464 1.21836 0.96599 0.95408 1.03010 1.21011 0.95034 0.92890 0.87490 0.89242 1.22199 0.95307 1.03015 1.01841 1.45981 1.71507 1.06818 1.13596 1.18285 0.76491 0.81859 0.88093 1.90783 1.50026 1.64049 1.36081 1.19888 1.09436 0.94802 0.93790 1.21306 0.94065 0.98872 0.92246 1.21030 1.03968 0.94406 0.98063 1.19743 0.87914 0.93415 0.93793 1.21598 1.03289 1.03352 0.94318 1.31956 1.13646 1.31003 0.98530 1.05282 0.73272 0.74695 0.74723 1.93493 1.83425 1.78046 1.40582 1.93404 1.41751 1.85193 1.77932 1.51580 1.16616 1.63558 1.38508 1.19197 0.80582 1.33723 1.08630 0.88083 1.25134 0.99976 0.96835 0.95285 1.69680 1.35344 1.34125 1.13363 0.86087 0.82111 0.78634 0.78494 1.19498 1.20748 1.19923 1.21062 0.86959 0.93194 0.96900 0.92466 0.92568 0.92508 0.90351 0.91445 0.91721 0.92507 0.91679 0.76764 0.85885 0.85138 0.88675 0.90439 0.87969 0.75410 0.91652 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.80 37.15 0.36 -0.70 16 2 C -0.13 -0.86 5.47 -26.74 -0.15 -1.00 16 3 C 0.14 1.34 2.57 -67.93 -0.17 1.16 16 4 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 5 C -0.17 -1.55 9.48 37.16 0.35 -1.20 16 6 N -0.73 -7.84 4.48 -54.75 -0.25 -8.09 16 7 C 0.56 8.68 7.74 -12.33 -0.10 8.59 16 8 O -0.53 -10.12 16.01 5.32 0.09 -10.03 16 9 C -0.18 -2.81 5.87 -104.97 -0.62 -3.43 16 10 C -0.05 -0.59 9.54 -39.19 -0.37 -0.97 16 11 C -0.16 -2.14 9.70 -39.64 -0.38 -2.53 16 12 C 0.05 0.89 5.88 -104.53 -0.61 0.28 16 13 C -0.17 -2.66 9.33 36.01 0.34 -2.33 16 14 C -0.67 -13.11 5.81 -39.64 -0.23 -13.34 16 15 S 2.63 58.17 4.92 -107.50 -0.53 57.64 16 16 O -0.97 -24.00 16.67 -57.17 -0.95 -24.95 16 17 O -0.99 -22.45 15.56 -57.17 -0.89 -23.34 16 18 N -0.95 -22.23 5.43 31.50 0.17 -22.06 16 19 C -0.28 -7.13 9.63 -15.06 -0.15 -7.27 16 20 H 0.10 2.49 7.82 -52.48 -0.41 2.08 16 21 C 0.03 0.87 5.50 -17.43 -0.10 0.77 16 22 N -0.88 -23.00 13.06 55.49 0.72 -22.27 16 23 Si 0.92 19.88 29.55 -169.99 -5.02 14.86 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C 0.04 0.74 9.09 -39.19 -0.36 0.39 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.40 3.21 6.64 -40.82 -0.27 2.93 16 37 H 0.12 1.05 6.41 -52.49 -0.34 0.71 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.10 1.80 4.79 -51.93 -0.25 1.55 16 42 H 0.41 9.56 8.04 -34.47 -0.28 9.29 16 43 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 44 H 0.15 3.06 6.92 -52.49 -0.36 2.70 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.14 378.00 -9.21 -41.35 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.06 Total: 12.77 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.18 Total: -21.57 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.65 Total: -52.42 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -1.76 Total: -58.32 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.53 Total: 57.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.14 -9.21 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339117807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.971 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds