Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47212 * 2 1 4 4 H 1.09003 * 109.47145 * 304.99512 * 3 2 1 5 5 C 1.53002 * 109.47144 * 185.00114 * 3 2 1 6 6 N 1.46501 * 109.47354 * 65.00015 * 3 2 1 7 7 C 1.34777 * 119.99912 * 205.00142 * 6 3 2 8 8 O 1.21555 * 119.99787 * 359.97438 * 7 6 3 9 9 C 1.47845 * 119.99837 * 179.97438 * 7 6 3 10 10 C 1.39596 * 120.14362 * 359.97438 * 9 7 6 11 11 C 1.37936 * 119.84885 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.14851 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.85430 * 179.97438 * 12 11 10 14 14 C 1.38340 * 120.29066 * 0.26164 * 12 11 10 15 15 S 1.76198 * 119.92584 * 179.74094 * 14 12 11 16 16 O 1.42097 * 106.40204 * 176.30410 * 15 14 12 17 17 O 1.42106 * 106.40406 * 309.22204 * 15 14 12 18 18 N 1.65602 * 107.21820 * 62.76013 * 15 14 12 19 19 C 1.36934 * 119.99927 * 65.09609 * 18 15 14 20 20 H 1.08009 * 119.99849 * 354.94776 * 19 18 15 21 21 C 1.38811 * 120.00391 * 174.94993 * 19 18 15 22 22 N 1.31619 * 119.99532 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00367 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47044 * 59.99992 * 23 21 19 25 25 H 1.48494 * 109.47311 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47047 * 300.00278 * 23 21 19 27 27 C 1.37976 * 120.14289 * 359.48216 * 14 12 11 28 28 H 1.08998 * 109.46965 * 60.00380 * 1 2 3 29 29 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47169 * 300.00434 * 1 2 3 31 31 H 1.09001 * 109.47169 * 239.99566 * 2 1 3 32 32 H 1.09001 * 109.47151 * 120.00114 * 2 1 3 33 33 H 1.09001 * 109.47582 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46795 * 300.00207 * 5 3 2 35 35 H 1.09003 * 109.47582 * 59.99335 * 5 3 2 36 36 H 0.97000 * 119.99679 * 25.00023 * 6 3 2 37 37 H 1.07995 * 120.07246 * 359.95958 * 10 9 7 38 38 H 1.07998 * 119.92214 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47026 * 86.10284 * 13 12 11 40 40 H 1.09000 * 109.47128 * 326.10150 * 13 12 11 41 41 H 1.08997 * 109.47108 * 206.10145 * 13 12 11 42 42 H 0.96994 * 119.99845 * 245.09395 * 18 15 14 43 43 H 0.97007 * 119.99952 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.07048 * 180.25438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0975 1.2518 7 6 1.5256 3.4384 1.2995 8 8 1.7333 4.1043 0.3040 9 6 1.1340 4.0994 2.5626 10 6 0.8943 3.3375 3.7075 11 6 0.5298 3.9605 4.8829 12 6 0.4020 5.3377 4.9289 13 6 0.0028 6.0114 6.2164 14 6 0.6333 6.0981 3.7967 15 16 0.4612 7.8504 3.8644 16 8 0.8457 8.3409 2.5874 17 8 -0.8103 8.1066 4.4448 18 7 1.5880 8.4124 4.9400 19 6 2.9229 8.2783 4.6658 20 1 3.2421 7.7343 3.7889 21 6 3.8659 8.8413 5.5147 22 7 3.4769 9.5036 6.5835 23 14 5.6869 8.6577 5.1410 24 1 5.9849 9.2664 3.8197 25 1 6.4796 9.3436 6.1927 26 1 6.0437 7.2164 5.1138 27 6 1.0037 5.4878 2.6159 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9283 2.4719 -0.1253 34 1 3.9994 0.9051 0.7161 35 1 3.8532 0.9568 -1.0571 36 1 1.4871 1.5661 2.0463 37 1 0.9939 2.2627 3.6729 38 1 0.3436 3.3722 5.7692 39 1 0.8909 6.1945 6.8212 40 1 -0.6844 5.3677 6.7655 41 1 -0.4869 6.9594 5.9938 42 1 1.3024 8.8366 5.7641 43 1 4.1358 9.8974 7.1765 44 1 1.1881 6.0830 1.7338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339117807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -120.735800 kcal Electronic energy + Delta-G solvation = -27869.418919 eV Core-core repulsion = 23912.307845 eV Total energy + Delta-G solvation = -3957.111074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.46457 -39.81434 -38.22773 -37.48178 -36.80589 -36.50346 -34.39456 -33.15952 -32.76395 -32.21108 -30.74243 -28.44253 -26.41091 -25.01295 -24.27573 -23.76304 -22.05546 -21.65800 -20.36445 -20.02410 -19.28185 -18.38202 -17.65886 -17.19121 -16.84771 -16.51361 -16.33840 -16.14197 -15.82402 -15.37051 -15.32309 -14.90922 -14.86573 -14.68149 -14.57724 -14.34783 -13.94111 -13.50958 -13.39753 -13.30637 -13.14187 -13.04697 -12.99355 -12.91115 -12.69628 -12.68176 -12.61209 -12.33242 -12.28341 -12.07413 -11.96856 -11.85632 -11.65189 -11.53316 -11.07570 -10.47892 -10.25073 -10.14946 -9.82486 -8.28928 -5.88285 -0.46126 -0.30260 -0.03456 1.45202 1.49086 1.55410 1.62171 2.03466 2.25880 2.52531 2.64648 2.87895 3.21648 3.45849 3.60583 3.75987 3.76128 3.82429 3.94595 4.07073 4.18282 4.28238 4.42108 4.48566 4.59045 4.61357 4.74543 4.74765 4.77733 4.82633 4.94654 5.00610 5.04331 5.08262 5.12377 5.16607 5.18038 5.26540 5.29834 5.41897 5.50021 5.65320 5.72776 6.45309 6.78633 6.94999 7.12531 7.35251 8.89174 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003594 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.151988 B = 7789.048480 C = 8758.545427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C 0.135 3.865 4 H 0.064 0.936 5 C -0.162 4.162 6 N -0.701 5.701 7 C 0.561 3.439 8 O -0.581 6.581 9 C -0.181 4.181 10 C -0.019 4.019 11 C -0.142 4.142 12 C 0.041 3.959 13 C -0.172 4.172 14 C -0.688 4.688 15 S 2.680 3.320 16 O -1.004 7.004 17 O -0.997 6.997 18 N -0.970 5.970 19 C -0.317 4.317 20 H 0.093 0.907 21 C -0.008 4.008 22 N -0.926 5.926 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.277 1.277 26 H -0.265 1.265 27 C 0.012 3.988 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.409 0.591 43 H 0.272 0.728 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -24.149 -3.238 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C 0.031 3.969 4 H 0.082 0.918 5 C -0.220 4.220 6 N -0.354 5.354 7 C 0.349 3.651 8 O -0.462 6.462 9 C -0.185 4.185 10 C -0.037 4.037 11 C -0.160 4.160 12 C 0.040 3.960 13 C -0.228 4.228 14 C -0.775 4.775 15 S 2.772 3.228 16 O -0.995 6.995 17 O -0.987 6.987 18 N -0.725 5.725 19 C -0.449 4.449 20 H 0.111 0.889 21 C -0.209 4.209 22 N -0.569 5.569 23 Si 0.797 3.203 24 H -0.202 1.202 25 H -0.202 1.202 26 H -0.190 1.190 27 C -0.008 4.008 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.254 0.746 37 H 0.199 0.801 38 H 0.200 0.800 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.081 0.919 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.109 -23.226 -4.476 24.008 hybrid contribution 1.022 0.213 0.462 1.142 sum -3.086 -23.013 -4.013 23.563 Atomic orbital electron populations 1.21809 0.95502 1.02423 1.01632 1.21797 0.96238 0.92898 1.04828 1.21177 0.95231 0.94501 0.85948 0.91759 1.22173 0.94983 1.01239 1.03653 1.45832 1.69486 1.05183 1.14931 1.18314 0.76365 0.83179 0.87241 1.90769 1.52369 1.65435 1.37581 1.20026 1.09299 0.93568 0.95576 1.21921 0.90183 1.01423 0.90155 1.21574 1.01493 0.92845 1.00052 1.20087 0.87756 0.95325 0.92864 1.21647 1.03938 1.02990 0.94221 1.30938 1.18297 1.27566 1.00715 1.02102 0.72351 0.75284 0.73093 1.93461 1.83891 1.79560 1.42546 1.93426 1.41270 1.85914 1.78068 1.51006 1.16028 1.68620 1.36853 1.19174 0.81335 1.34821 1.09592 0.88920 1.25756 1.03135 0.96609 0.95450 1.69763 1.35987 1.36606 1.14506 0.85300 0.78266 0.78890 0.77858 1.20171 1.20156 1.18952 1.20918 0.88900 0.95161 0.95845 0.93895 0.90960 0.92842 0.88909 0.89223 0.95213 0.90796 0.89849 0.74632 0.80086 0.80047 0.88812 0.86273 0.90562 0.75510 0.91903 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.80 71.98 0.71 -0.90 16 2 C -0.12 -1.08 5.47 30.59 0.17 -0.91 16 3 C 0.14 2.27 2.57 44.99 0.12 2.39 16 4 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 5 C -0.16 -2.71 9.48 71.98 0.68 -2.02 16 6 N -0.70 -12.98 4.48 -445.40 -2.00 -14.98 16 7 C 0.56 16.62 7.74 86.79 0.67 17.29 16 8 O -0.58 -22.81 16.01 -3.89 -0.06 -22.87 16 9 C -0.18 -5.44 5.87 -20.09 -0.12 -5.56 16 10 C -0.02 -0.38 9.54 22.53 0.21 -0.16 16 11 C -0.14 -3.09 9.70 22.23 0.22 -2.88 16 12 C 0.04 1.30 5.88 -19.81 -0.12 1.18 16 13 C -0.17 -5.03 9.33 71.24 0.66 -4.37 16 14 C -0.69 -26.94 5.81 22.23 0.13 -26.81 16 15 S 2.68 123.44 4.92 -56.49 -0.28 123.17 16 16 O -1.00 -52.95 16.67 -128.00 -2.13 -55.09 16 17 O -1.00 -46.05 15.56 -128.00 -1.99 -48.05 16 18 N -0.97 -47.83 5.43 -54.26 -0.29 -48.13 16 19 C -0.32 -16.77 9.63 84.03 0.81 -15.96 16 20 H 0.09 4.88 7.82 -2.91 -0.02 4.86 16 21 C -0.01 -0.43 5.50 84.86 0.47 0.04 16 22 N -0.93 -50.44 13.06 21.65 0.28 -50.16 16 23 Si 0.97 42.16 29.55 68.60 2.03 44.19 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 27 C 0.01 0.48 9.09 22.53 0.20 0.68 16 28 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.41 4.43 6.64 -92.71 -0.62 3.82 16 37 H 0.18 1.59 6.41 -2.91 -0.02 1.57 16 38 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.12 2.44 8.11 -2.39 -0.02 2.42 16 41 H 0.08 2.65 4.79 -2.39 -0.01 2.64 16 42 H 0.41 20.23 8.04 -96.75 -0.78 19.45 16 43 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 44 H 0.12 5.36 6.92 -2.91 -0.02 5.34 16 Total: -1.00 -77.15 378.00 0.02 -77.13 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.35 Total: 32.76 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.81 Total: -37.99 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -2.01 Total: -113.26 kcal Atomic # 8 Polarization: -121.82 SS G_CDS: -4.19 Total: -126.00 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 123.44 SS G_CDS: -0.28 Total: 123.17 kcal Total: -77.15 0.02 -77.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339117807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.604 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds