Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00120 * 2 1 4 4 N 1.46502 * 109.47167 * 124.99403 * 3 2 1 5 5 C 1.46498 * 120.00649 * 274.84379 * 4 3 2 6 6 C 1.50706 * 109.46971 * 263.64776 * 5 4 3 7 7 H 1.08001 * 119.99638 * 359.97438 * 6 5 4 8 8 C 1.37866 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99890 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00354 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47451 * 90.00195 * 10 8 6 12 12 H 1.48503 * 109.47262 * 210.00122 * 10 8 6 13 13 H 1.48501 * 109.47060 * 330.00074 * 10 8 6 14 14 C 1.34783 * 119.99643 * 94.83310 * 4 3 2 15 15 O 1.21359 * 119.99904 * 354.64403 * 14 4 3 16 16 C 1.49357 * 119.99915 * 174.63235 * 14 4 3 17 17 O 1.21372 * 120.00073 * 0.32256 * 16 14 4 18 18 N 1.34771 * 120.00086 * 180.32119 * 16 14 4 19 19 C 1.39551 * 120.00383 * 184.76986 * 18 16 14 20 20 C 1.40128 * 119.67229 * 324.22694 * 19 18 16 21 21 C 1.35850 * 120.88932 * 179.97438 * 20 19 18 22 22 C 1.40674 * 119.96307 * 0.25608 * 21 20 19 23 23 N 1.33725 * 120.95122 * 180.32000 * 22 21 20 24 24 C 1.31354 * 119.76107 * 179.70864 * 23 22 21 25 25 C 1.39617 * 120.72800 * 359.68769 * 24 23 22 26 26 N 1.31364 * 120.69778 * 0.02562 * 25 24 23 27 27 C 1.33813 * 119.70558 * 359.97438 * 26 25 24 28 28 C 1.37763 * 119.67979 * 144.19848 * 19 18 16 29 29 H 1.07996 * 120.00232 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99915 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00348 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46909 * 5.00486 * 3 2 1 33 33 H 1.08996 * 109.47256 * 244.99444 * 3 2 1 34 34 H 1.09003 * 109.47026 * 23.64334 * 5 4 3 35 35 H 1.08993 * 109.47531 * 143.64066 * 5 4 3 36 36 H 0.97004 * 120.00188 * 179.97438 * 9 8 6 37 37 H 0.97007 * 120.00004 * 4.77342 * 18 16 14 38 38 H 1.07998 * 119.55880 * 359.97371 * 20 19 18 39 39 H 1.08007 * 120.01748 * 179.97438 * 21 20 19 40 40 H 1.07992 * 119.63604 * 179.66763 * 24 23 22 41 41 H 1.08005 * 119.64835 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.21191 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5293 1.7655 2.4516 6 6 2.8599 3.2228 2.6467 7 1 3.3657 3.7710 1.8657 8 6 2.5166 3.8561 3.8222 9 7 2.8055 5.1277 3.9928 10 14 1.6410 2.9081 5.1728 11 1 2.6455 2.3018 6.0832 12 1 0.7702 3.8328 5.9421 13 1 0.8113 1.8359 4.5668 14 6 4.2768 0.9575 0.9581 15 8 4.6383 0.5065 -0.1090 16 6 5.2538 1.0980 2.0790 17 8 4.8909 1.5438 3.1480 18 7 6.5382 0.7297 1.9036 19 6 7.4279 0.7669 2.9781 20 6 7.3167 1.7837 3.9359 21 6 8.1691 1.8433 4.9920 22 6 9.1835 0.8787 5.1314 23 7 10.0293 0.9148 6.1666 24 6 10.9644 -0.0011 6.2768 25 6 11.0822 -1.0182 5.3275 26 7 10.2604 -1.0792 4.3045 27 6 9.2994 -0.1578 4.1701 28 6 8.4064 -0.1966 3.0872 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6214 1.4026 -0.9313 34 1 1.4506 1.6251 2.5214 35 1 3.0231 1.1744 3.2227 36 1 2.5636 5.5735 4.8197 37 1 6.8444 0.4387 1.0303 38 1 6.5429 2.5301 3.8331 39 1 8.0708 2.6334 5.7218 40 1 11.6497 0.0331 7.1106 41 1 11.8573 -1.7626 5.4355 42 1 8.4857 -0.9772 2.3450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340620589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = 52.962928 kcal Electronic energy + Delta-G solvation = -28731.962900 eV Core-core repulsion = 24679.232768 eV Total energy + Delta-G solvation = -4052.730132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50148 -40.57659 -38.79930 -37.14501 -36.05937 -34.90776 -34.23820 -33.33819 -32.19734 -30.73054 -29.84080 -28.25369 -26.81715 -25.25432 -24.59265 -23.21118 -22.44951 -22.11488 -20.25385 -19.38568 -18.88717 -18.20570 -17.30020 -17.08654 -16.79159 -16.44102 -15.71661 -15.55515 -15.28910 -15.08523 -14.71773 -14.59447 -14.35293 -14.08581 -13.94802 -13.56760 -13.24125 -12.92133 -12.67044 -12.43115 -12.26613 -12.01522 -11.79916 -11.76615 -11.72395 -11.66540 -11.37491 -11.05401 -10.76799 -10.56064 -10.26605 -10.13428 -9.62418 -9.36618 -9.20680 -8.93197 -8.74791 -8.56482 -8.19690 -8.03857 -6.13189 -4.11221 0.12247 0.47298 1.72453 1.96114 2.24607 2.64949 2.83220 3.27198 3.32157 3.35714 3.62145 3.83726 3.96876 4.02944 4.10002 4.21018 4.36836 4.65015 4.76611 4.82101 5.01005 5.13277 5.20990 5.21071 5.31305 5.32366 5.48909 5.67390 5.71417 5.95950 6.01788 6.09816 6.14681 6.19427 6.29800 6.30405 6.70916 6.73730 6.79546 6.84887 7.03662 7.17513 7.26117 7.48851 7.63956 7.75104 8.03373 8.34357 8.46693 8.86133 9.47005 10.99714 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003494 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.486252 B = 8011.336461 C = 9668.623800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.550 5.550 5 C 0.199 3.801 6 C -0.518 4.518 7 H 0.073 0.927 8 C 0.083 3.917 9 N -0.895 5.895 10 Si 0.871 3.129 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.512 3.488 15 O -0.551 6.551 16 C 0.495 3.505 17 O -0.432 6.432 18 N -0.660 5.660 19 C 0.194 3.806 20 C -0.093 4.093 21 C -0.066 4.066 22 C 0.066 3.934 23 N -0.419 5.419 24 C 0.059 3.941 25 C 0.074 3.926 26 N -0.430 5.430 27 C 0.100 3.900 28 C -0.132 4.132 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.264 0.736 37 H 0.421 0.579 38 H 0.164 0.836 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 -11.388 -0.951 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.279 5.279 5 C 0.079 3.921 6 C -0.556 4.556 7 H 0.091 0.909 8 C -0.120 4.120 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.432 6.432 16 C 0.277 3.723 17 O -0.299 6.299 18 N -0.308 5.308 19 C 0.095 3.905 20 C -0.114 4.114 21 C -0.086 4.086 22 C -0.059 4.059 23 N -0.133 5.133 24 C -0.116 4.116 25 C -0.101 4.101 26 N -0.145 5.145 27 C -0.024 4.024 28 C -0.155 4.155 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.259 0.741 38 H 0.181 0.819 39 H 0.163 0.837 40 H 0.188 0.812 41 H 0.189 0.811 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.659 -11.010 -0.719 14.664 hybrid contribution -0.209 -0.540 0.526 0.783 sum 9.450 -11.550 -0.193 14.925 Atomic orbital electron populations 1.23839 0.95737 1.01887 1.00812 1.23314 0.96143 0.99006 0.99628 1.20656 0.92210 0.95465 0.89915 1.47911 1.07288 1.60008 1.12690 1.20331 0.95559 0.97602 0.78624 1.21066 1.39324 0.92186 1.03009 0.90888 1.24698 0.95171 0.94559 0.97606 1.69883 1.47093 1.09926 1.26443 0.86931 0.80132 0.80150 0.82949 1.19764 1.21260 1.19171 1.19637 0.83693 0.79863 0.87390 1.90682 1.78714 1.46394 1.27386 1.20424 0.82610 0.79500 0.89814 1.90938 1.76584 1.36268 1.26123 1.43240 1.08619 1.66629 1.12354 1.17743 0.90109 0.93301 0.89301 1.21472 0.99181 0.97635 0.93107 1.20736 0.92105 0.97678 0.98070 1.19624 0.96920 0.96669 0.92724 1.68632 1.02087 1.23332 1.19228 1.23935 0.96407 0.91566 0.99693 1.23970 0.97477 0.98046 0.90646 1.68662 1.02244 1.23037 1.20547 1.19127 0.95008 0.92662 0.95613 1.20558 0.96950 0.98929 0.99078 0.88599 0.88199 0.87502 0.89034 0.89165 0.94970 0.92658 0.92560 0.74077 0.81866 0.83655 0.81189 0.81142 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 14.32 29.02 0.42 -1.91 16 2 C -0.16 -2.33 9.84 -36.02 -0.35 -2.69 16 3 C 0.14 2.30 5.83 -5.19 -0.03 2.27 16 4 N -0.55 -10.77 2.46 -176.97 -0.44 -11.20 16 5 C 0.20 4.44 3.85 -5.19 -0.02 4.42 16 6 C -0.52 -13.60 8.34 -34.44 -0.29 -13.89 16 7 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 8 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 9 N -0.90 -26.18 13.96 55.43 0.77 -25.41 16 10 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 14 C 0.51 9.78 7.67 -11.63 -0.09 9.69 16 15 O -0.55 -10.44 16.04 5.49 0.09 -10.35 16 16 C 0.49 9.18 7.56 -11.63 -0.09 9.09 16 17 O -0.43 -9.26 9.55 5.48 0.05 -9.21 16 18 N -0.66 -9.88 5.29 -10.32 -0.05 -9.93 16 19 C 0.19 2.87 6.27 -83.81 -0.53 2.34 16 20 C -0.09 -1.48 8.58 -39.73 -0.34 -1.83 16 21 C -0.07 -0.98 9.96 -39.52 -0.39 -1.38 16 22 C 0.07 0.97 6.59 -84.75 -0.56 0.41 16 23 N -0.42 -5.64 10.46 -10.78 -0.11 -5.75 16 24 C 0.06 0.58 11.21 -17.24 -0.19 0.38 16 25 C 0.07 0.70 11.21 -17.24 -0.19 0.51 16 26 N -0.43 -5.52 10.47 -10.82 -0.11 -5.63 16 27 C 0.10 1.43 6.59 -84.81 -0.56 0.87 16 28 C -0.13 -1.78 9.92 -38.94 -0.39 -2.17 16 29 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 33 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 34 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 35 H 0.06 1.28 5.27 -51.93 -0.27 1.01 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.42 5.33 8.29 -40.82 -0.34 4.99 16 38 H 0.16 3.00 6.22 -52.49 -0.33 2.68 16 39 H 0.15 2.00 8.06 -52.48 -0.42 1.58 16 40 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -32.37 364.20 -7.31 -39.69 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.63 Total: 7.93 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -3.70 Total: 8.29 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.06 Total: -57.93 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.14 Total: -19.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.37 -7.31 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340620589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.650 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds