Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00120 * 2 1 4 4 N 1.46502 * 109.47167 * 124.99403 * 3 2 1 5 5 C 1.46498 * 120.00649 * 274.84379 * 4 3 2 6 6 C 1.50706 * 109.46971 * 263.64776 * 5 4 3 7 7 H 1.08001 * 119.99638 * 359.97438 * 6 5 4 8 8 C 1.37866 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99890 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00354 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47451 * 90.00195 * 10 8 6 12 12 H 1.48503 * 109.47262 * 210.00122 * 10 8 6 13 13 H 1.48501 * 109.47060 * 330.00074 * 10 8 6 14 14 C 1.34783 * 119.99643 * 94.83310 * 4 3 2 15 15 O 1.21359 * 119.99904 * 354.64403 * 14 4 3 16 16 C 1.49357 * 119.99915 * 174.63235 * 14 4 3 17 17 O 1.21372 * 120.00073 * 0.32256 * 16 14 4 18 18 N 1.34771 * 120.00086 * 180.32119 * 16 14 4 19 19 C 1.39551 * 120.00383 * 184.76986 * 18 16 14 20 20 C 1.40128 * 119.67229 * 324.22694 * 19 18 16 21 21 C 1.35850 * 120.88932 * 179.97438 * 20 19 18 22 22 C 1.40674 * 119.96307 * 0.25608 * 21 20 19 23 23 N 1.33725 * 120.95122 * 180.32000 * 22 21 20 24 24 C 1.31354 * 119.76107 * 179.70864 * 23 22 21 25 25 C 1.39617 * 120.72800 * 359.68769 * 24 23 22 26 26 N 1.31364 * 120.69778 * 0.02562 * 25 24 23 27 27 C 1.33813 * 119.70558 * 359.97438 * 26 25 24 28 28 C 1.37763 * 119.67979 * 144.19848 * 19 18 16 29 29 H 1.07996 * 120.00232 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99915 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00348 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46909 * 5.00486 * 3 2 1 33 33 H 1.08996 * 109.47256 * 244.99444 * 3 2 1 34 34 H 1.09003 * 109.47026 * 23.64334 * 5 4 3 35 35 H 1.08993 * 109.47531 * 143.64066 * 5 4 3 36 36 H 0.97004 * 120.00188 * 179.97438 * 9 8 6 37 37 H 0.97007 * 120.00004 * 4.77342 * 18 16 14 38 38 H 1.07998 * 119.55880 * 359.97371 * 20 19 18 39 39 H 1.08007 * 120.01748 * 179.97438 * 21 20 19 40 40 H 1.07992 * 119.63604 * 179.66763 * 24 23 22 41 41 H 1.08005 * 119.64835 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.21191 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5293 1.7655 2.4516 6 6 2.8599 3.2228 2.6467 7 1 3.3657 3.7710 1.8657 8 6 2.5166 3.8561 3.8222 9 7 2.8055 5.1277 3.9928 10 14 1.6410 2.9081 5.1728 11 1 2.6455 2.3018 6.0832 12 1 0.7702 3.8328 5.9421 13 1 0.8113 1.8359 4.5668 14 6 4.2768 0.9575 0.9581 15 8 4.6383 0.5065 -0.1090 16 6 5.2538 1.0980 2.0790 17 8 4.8909 1.5438 3.1480 18 7 6.5382 0.7297 1.9036 19 6 7.4279 0.7669 2.9781 20 6 7.3167 1.7837 3.9359 21 6 8.1691 1.8433 4.9920 22 6 9.1835 0.8787 5.1314 23 7 10.0293 0.9148 6.1666 24 6 10.9644 -0.0011 6.2768 25 6 11.0822 -1.0182 5.3275 26 7 10.2604 -1.0792 4.3045 27 6 9.2994 -0.1578 4.1701 28 6 8.4064 -0.1966 3.0872 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6214 1.4026 -0.9313 34 1 1.4506 1.6251 2.5214 35 1 3.0231 1.1744 3.2227 36 1 2.5636 5.5735 4.8197 37 1 6.8444 0.4387 1.0303 38 1 6.5429 2.5301 3.8331 39 1 8.0708 2.6334 5.7218 40 1 11.6497 0.0331 7.1106 41 1 11.8573 -1.7626 5.4355 42 1 8.4857 -0.9772 2.3450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340620589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = 30.139046 kcal Electronic energy + Delta-G solvation = -28732.952618 eV Core-core repulsion = 24679.232768 eV Total energy + Delta-G solvation = -4053.719850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57401 -41.92505 -40.16307 -38.44065 -37.50787 -35.93351 -35.40775 -34.96677 -33.92239 -31.77182 -30.94774 -30.07397 -28.16626 -26.33590 -25.73438 -24.77022 -23.74485 -23.44470 -21.50642 -20.62460 -20.02759 -19.31623 -19.08909 -18.72003 -17.93788 -17.73010 -17.04275 -16.95654 -16.62587 -16.16274 -15.99847 -15.88509 -15.69174 -15.44229 -15.14248 -14.89071 -14.66645 -14.37388 -14.11981 -13.94380 -13.58660 -13.36000 -13.17761 -12.94686 -12.84080 -12.78934 -12.68314 -12.63736 -12.31168 -12.21701 -11.96698 -11.67658 -11.34426 -10.77554 -10.56688 -10.22959 -10.12360 -9.85815 -9.69903 -9.28078 -8.25097 -6.26221 -0.87981 -0.53589 0.34026 0.85166 1.04074 1.36521 1.40949 1.45845 1.48765 1.72906 2.17340 2.36968 2.48320 2.96000 3.09092 3.12641 3.13796 3.25326 3.27328 3.75120 3.92491 3.99392 4.01478 4.11922 4.14520 4.44777 4.45908 4.53616 4.64835 4.65028 4.76042 4.85432 4.91626 4.99786 5.04812 5.15158 5.26560 5.33640 5.49307 5.63505 5.67433 5.81774 5.94095 6.07704 6.26398 6.34274 6.65482 6.70101 6.72715 6.93568 7.35352 8.91474 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003494 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.486252 B = 8011.336461 C = 9668.623800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.557 5.557 5 C 0.213 3.787 6 C -0.506 4.506 7 H 0.030 0.970 8 C 0.028 3.972 9 N -0.944 5.944 10 Si 0.931 3.069 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.239 1.239 14 C 0.510 3.490 15 O -0.550 6.550 16 C 0.494 3.506 17 O -0.470 6.470 18 N -0.642 5.642 19 C 0.173 3.827 20 C -0.109 4.109 21 C -0.071 4.071 22 C 0.049 3.951 23 N -0.451 5.451 24 C 0.079 3.921 25 C 0.092 3.908 26 N -0.449 5.449 27 C 0.081 3.919 28 C -0.112 4.112 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.264 0.736 37 H 0.432 0.568 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.219 0.781 41 H 0.223 0.777 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.315 -14.738 -0.181 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.286 5.286 5 C 0.092 3.908 6 C -0.545 4.545 7 H 0.048 0.952 8 C -0.171 4.171 9 N -0.585 5.585 10 Si 0.755 3.245 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.163 1.163 14 C 0.292 3.708 15 O -0.430 6.430 16 C 0.276 3.724 17 O -0.340 6.340 18 N -0.291 5.291 19 C 0.076 3.924 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.074 4.074 23 N -0.165 5.165 24 C -0.098 4.098 25 C -0.085 4.085 26 N -0.164 5.164 27 C -0.041 4.041 28 C -0.134 4.134 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.272 0.728 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.235 0.765 41 H 0.240 0.760 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.863 -14.380 -0.029 18.022 hybrid contribution -0.265 0.410 0.328 0.588 sum 10.598 -13.970 0.299 17.538 Atomic orbital electron populations 1.24100 0.95023 1.03341 0.97410 1.23130 0.96730 0.97682 1.02683 1.20813 0.91923 0.96984 0.88754 1.47929 1.08037 1.60075 1.12587 1.19987 0.95921 0.94761 0.80174 1.21180 1.37668 0.94034 1.01598 0.95154 1.25483 0.96252 0.95264 1.00052 1.70028 1.49343 1.11859 1.27277 0.85968 0.79134 0.79462 0.79907 1.20391 1.20945 1.16263 1.19767 0.83746 0.79715 0.87562 1.90667 1.78650 1.46387 1.27303 1.20451 0.83577 0.79202 0.89170 1.90924 1.77426 1.38375 1.27277 1.43005 1.07511 1.65510 1.13070 1.17681 0.91117 0.94171 0.89433 1.21172 0.99249 0.97961 0.94629 1.20732 0.92440 0.98177 0.97710 1.19615 0.97287 0.96801 0.93686 1.68672 1.03312 1.25276 1.19235 1.24868 0.94928 0.89681 1.00306 1.24909 0.96742 0.98136 0.88665 1.68743 1.02668 1.22757 1.22196 1.19232 0.95949 0.93218 0.95744 1.20719 0.95442 0.98214 0.99014 0.86152 0.87633 0.87452 0.89177 0.89174 0.93765 0.92923 0.92654 0.72768 0.85189 0.83740 0.76460 0.76042 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 14.32 67.78 0.97 -2.65 16 2 C -0.18 -5.03 9.84 25.65 0.25 -4.78 16 3 C 0.14 4.49 5.83 85.63 0.50 4.99 16 4 N -0.56 -22.18 2.46 -832.18 -2.05 -24.22 16 5 C 0.21 9.62 3.85 85.64 0.33 9.95 16 6 C -0.51 -27.74 8.34 25.60 0.21 -27.52 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 8 C 0.03 1.56 5.47 84.65 0.46 2.02 16 9 N -0.94 -57.84 13.96 21.44 0.30 -57.54 16 10 Si 0.93 43.42 27.47 68.60 1.88 45.30 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 14 C 0.51 19.93 7.67 87.24 0.67 20.60 16 15 O -0.55 -20.91 16.04 -3.28 -0.05 -20.96 16 16 C 0.49 19.17 7.56 87.24 0.66 19.83 16 17 O -0.47 -21.35 9.55 -3.32 -0.03 -21.38 16 18 N -0.64 -19.92 5.29 -304.93 -1.61 -21.54 16 19 C 0.17 5.34 6.27 38.26 0.24 5.57 16 20 C -0.11 -3.78 8.58 22.17 0.19 -3.59 16 21 C -0.07 -2.24 9.96 22.31 0.22 -2.02 16 22 C 0.05 1.44 6.59 40.34 0.27 1.70 16 23 N -0.45 -11.37 10.46 -188.01 -1.97 -13.34 16 24 C 0.08 1.21 11.21 85.10 0.95 2.16 16 25 C 0.09 1.31 11.21 85.10 0.95 2.27 16 26 N -0.45 -10.19 10.47 -188.15 -1.97 -12.16 16 27 C 0.08 2.22 6.59 40.26 0.27 2.49 16 28 C -0.11 -2.96 9.92 22.69 0.23 -2.73 16 29 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.11 2.26 7.84 -2.91 -0.02 2.24 16 31 H 0.11 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.09 2.93 7.76 -2.39 -0.02 2.91 16 33 H 0.09 2.91 7.36 -2.39 -0.02 2.89 16 34 H 0.04 1.90 7.08 -2.39 -0.02 1.89 16 35 H 0.05 2.47 5.27 -2.39 -0.01 2.46 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.43 11.07 8.29 -92.70 -0.77 10.30 16 38 H 0.13 5.38 6.22 -2.91 -0.02 5.36 16 39 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.22 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -74.58 364.20 2.13 -72.45 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.25 Total: 25.09 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 7.37 Total: 28.30 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -7.30 Total: -128.80 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.08 Total: -42.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Total: -74.58 2.13 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340620589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.587 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds