Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46595 * 2 1 4 4 N 1.46496 * 109.47112 * 120.00117 * 2 1 3 5 5 C 1.46506 * 119.99759 * 299.99885 * 4 2 1 6 6 S 1.65599 * 120.00096 * 120.00384 * 4 2 1 7 7 O 1.42101 * 106.40069 * 23.53574 * 6 4 2 8 8 O 1.42101 * 106.40241 * 156.45778 * 6 4 2 9 9 C 1.76196 * 107.21563 * 269.99739 * 6 4 2 10 10 C 1.38363 * 119.85452 * 269.72761 * 9 6 4 11 11 C 1.37956 * 120.14498 * 179.72626 * 10 9 6 12 12 C 1.39580 * 119.85432 * 0.54644 * 11 10 9 13 13 C 1.47846 * 120.14678 * 179.70342 * 12 11 10 14 14 O 1.21545 * 119.99906 * 180.02562 * 13 12 11 15 15 N 1.34775 * 119.99924 * 0.02562 * 13 12 11 16 16 C 1.46491 * 120.00045 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47200 * 179.97438 * 16 15 13 18 18 H 1.07991 * 119.99625 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99755 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46818 * 59.99934 * 21 19 17 23 23 H 1.48494 * 109.47445 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47125 * 300.00317 * 21 19 17 25 25 C 1.39579 * 119.70899 * 359.72724 * 12 11 10 26 26 C 1.37962 * 119.85460 * 359.97438 * 25 12 11 27 27 H 1.08993 * 109.47250 * 299.99624 * 1 2 3 28 28 H 1.08998 * 109.47223 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46748 * 240.00198 * 2 1 3 31 31 H 1.08993 * 109.47015 * 60.00232 * 3 2 1 32 32 H 1.09000 * 109.46385 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47314 * 299.99918 * 3 2 1 34 34 H 1.09001 * 109.47060 * 90.00688 * 5 4 2 35 35 H 1.09004 * 109.47073 * 210.00177 * 5 4 2 36 36 H 1.09000 * 109.47212 * 330.00260 * 5 4 2 37 37 H 1.07996 * 119.92712 * 0.02562 * 10 9 6 38 38 H 1.07997 * 120.07504 * 180.24794 * 11 10 9 39 39 H 0.97006 * 119.99938 * 0.02562 * 15 13 12 40 40 H 1.08999 * 109.47872 * 300.00159 * 16 15 13 41 41 H 1.09001 * 109.47308 * 60.00488 * 16 15 13 42 42 H 0.97003 * 120.00035 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.07137 * 179.97438 * 25 12 11 44 44 H 1.07993 * 119.93144 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1900 2.5267 6 16 2.9705 -2.0370 1.0442 7 8 3.5794 -1.9552 -0.2371 8 8 3.7119 -2.1425 2.2518 9 6 1.8962 -3.4327 0.9963 10 6 1.5443 -4.0717 2.1721 11 6 0.6991 -5.1616 2.1421 12 6 0.2078 -5.6265 0.9211 13 6 -0.6932 -6.7980 0.8809 14 8 -1.1191 -7.2008 -0.1838 15 7 -1.0423 -7.4192 2.0249 16 6 -1.9355 -8.5796 1.9851 17 6 -2.1660 -9.0844 3.3863 18 1 -1.6947 -8.5899 4.2227 19 6 -2.9787 -10.1775 3.6002 20 7 -3.5523 -10.7800 2.5816 21 14 -3.2651 -10.8027 5.3370 22 1 -3.8858 -9.7288 6.1536 23 1 -4.1694 -11.9798 5.2966 24 1 -1.9672 -11.1967 5.9416 25 6 0.5712 -4.9808 -0.2618 26 6 1.4123 -3.8881 -0.2173 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.7376 -0.6593 2.8568 35 1 2.4629 -0.4292 3.2292 36 1 1.5294 0.8907 2.4843 37 1 1.9283 -3.7135 3.1157 38 1 0.4220 -5.6570 3.0608 39 1 -0.7027 -7.0974 2.8747 40 1 -2.8881 -8.2901 1.5415 41 1 -1.4804 -9.3681 1.3857 42 1 -4.1237 -11.5492 2.7321 43 1 0.1948 -5.3358 -1.2098 44 1 1.6946 -3.3879 -1.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342684275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = -87.080653 kcal Electronic energy + Delta-G solvation = -27121.917877 eV Core-core repulsion = 23166.266200 eV Total energy + Delta-G solvation = -3955.651677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95765 -38.06965 -37.96541 -37.53595 -36.12403 -34.44755 -32.63938 -32.05585 -31.50654 -31.19028 -27.60995 -27.43819 -26.84336 -24.50417 -23.06137 -22.27831 -21.49789 -20.12813 -19.26028 -18.55472 -18.12377 -17.45861 -16.50902 -16.01922 -15.79291 -15.06408 -15.03840 -14.78961 -14.66327 -14.61389 -14.55270 -14.25408 -13.81213 -13.53639 -13.37697 -13.15721 -13.00057 -12.90760 -12.74269 -12.42672 -12.33475 -12.23110 -12.06706 -11.92815 -11.72019 -11.70337 -11.42015 -11.26477 -11.10547 -11.07745 -10.94203 -10.40258 -9.60121 -9.52527 -9.43784 -9.37738 -9.25615 -8.83428 -8.05949 -6.24378 -4.32342 0.00461 0.37655 1.11798 2.50620 2.93710 3.20567 3.25625 3.26875 3.42908 3.78302 3.85666 3.95968 4.25106 4.28168 4.52410 4.63595 4.64722 4.67270 4.84182 4.99624 5.11092 5.11918 5.13203 5.19357 5.20674 5.25866 5.31426 5.39939 5.42290 5.45735 5.64481 5.69303 5.83550 5.84577 5.89094 5.92617 6.16299 6.21443 6.57305 7.16087 7.21314 7.38705 7.53960 7.86175 8.41291 8.62794 8.86408 9.34148 10.85656 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.002324 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.375518 B =12046.456724 C =12331.642425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.995 5.995 5 C 0.080 3.920 6 S 2.693 3.307 7 O -0.955 6.955 8 O -0.954 6.954 9 C -0.668 4.668 10 C -0.027 4.027 11 C -0.111 4.111 12 C -0.061 4.061 13 C 0.531 3.469 14 O -0.543 6.543 15 N -0.699 5.699 16 C 0.248 3.752 17 C -0.548 4.548 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.087 4.087 26 C -0.029 4.029 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.392 0.608 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.268 0.732 43 H 0.146 0.854 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.636 25.240 -2.106 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.032 3.968 3 C -0.219 4.219 4 N -0.834 5.834 5 C -0.065 4.065 6 S 2.784 3.216 7 O -0.945 6.945 8 O -0.945 6.945 9 C -0.756 4.756 10 C -0.046 4.046 11 C -0.131 4.131 12 C -0.064 4.064 13 C 0.315 3.685 14 O -0.422 6.422 15 N -0.347 5.347 16 C 0.128 3.872 17 C -0.586 4.586 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.521 5.521 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.107 4.107 26 C -0.048 4.048 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.226 0.774 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.164 0.836 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.060 24.727 -2.925 27.246 hybrid contribution -0.861 -0.760 1.396 1.807 sum 10.199 23.968 -1.529 26.093 Atomic orbital electron populations 1.22198 0.94569 1.02941 1.02712 1.20980 0.94853 0.94238 0.86745 1.22127 1.01852 0.95319 1.02588 1.57527 1.70376 1.43229 1.12265 1.21609 1.01541 1.01203 0.82141 1.01979 0.73488 0.72595 0.73539 1.93576 1.73197 1.86247 1.41470 1.93573 1.67738 1.86242 1.46907 1.31039 1.21795 1.22884 0.99846 1.20817 0.93333 0.93673 0.96787 1.21548 0.97046 0.96686 0.97800 1.20730 0.96000 0.95439 0.94268 1.18251 0.81741 0.83230 0.85258 1.90755 1.55603 1.66202 1.29686 1.46492 1.48487 1.32365 1.07334 1.19214 0.88507 0.81647 0.97845 1.21146 1.30909 1.14668 0.91851 0.91872 1.24950 0.95120 0.96076 0.97779 1.69958 1.30550 1.21114 1.30479 0.86444 0.78300 0.78391 0.83605 1.20012 1.20997 1.19994 1.21437 0.96143 0.94378 0.98763 1.20855 0.92888 0.94957 0.96140 0.91919 0.91274 0.91910 0.88057 0.91950 0.92020 0.91183 0.92426 0.89752 0.90274 0.83877 0.84248 0.77423 0.95111 0.95101 0.92260 0.83616 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 9.19 37.16 0.34 -0.61 16 2 C 0.14 0.90 3.24 -67.93 -0.22 0.68 16 3 C -0.16 -0.84 9.17 37.16 0.34 -0.50 16 4 N -1.00 -7.58 3.07 -114.60 -0.35 -7.93 16 5 C 0.08 0.46 9.72 59.85 0.58 1.05 16 6 S 2.69 28.14 5.69 -107.50 -0.61 27.53 16 7 O -0.95 -11.95 15.83 -57.17 -0.91 -12.85 16 8 O -0.95 -11.95 15.86 -57.17 -0.91 -12.86 16 9 C -0.67 -7.48 5.98 -39.49 -0.24 -7.72 16 10 C -0.03 -0.30 9.50 -39.64 -0.38 -0.68 16 11 C -0.11 -1.42 9.54 -39.18 -0.37 -1.79 16 12 C -0.06 -0.94 5.87 -104.97 -0.62 -1.56 16 13 C 0.53 10.58 7.77 -12.33 -0.10 10.49 16 14 O -0.54 -12.82 16.35 5.33 0.09 -12.73 16 15 N -0.70 -14.39 5.50 -62.44 -0.34 -14.73 16 16 C 0.25 6.41 5.43 -5.20 -0.03 6.39 16 17 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 21 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.09 -1.20 9.60 -39.18 -0.38 -1.58 16 26 C -0.03 -0.33 9.50 -39.64 -0.38 -0.71 16 27 H 0.06 0.32 7.67 -51.93 -0.40 -0.07 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.70 6.91 -51.93 -0.36 0.34 16 31 H 0.06 0.27 6.66 -51.93 -0.35 -0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.51 7.02 -51.93 -0.36 0.15 16 36 H 0.08 0.32 6.43 -51.93 -0.33 -0.01 16 37 H 0.14 1.28 7.60 -52.49 -0.40 0.88 16 38 H 0.14 1.53 6.41 -52.49 -0.34 1.19 16 39 H 0.39 6.80 6.36 -40.82 -0.26 6.54 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.15 1.97 7.65 -52.49 -0.40 1.57 16 44 H 0.14 1.32 7.60 -52.49 -0.40 0.92 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -34.69 378.90 -9.55 -44.24 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.09 Total: 2.67 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.85 Total: -9.66 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.04 Total: -47.46 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.73 Total: -38.44 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 28.14 SS G_CDS: -0.61 Total: 27.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.69 -9.55 -44.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342684275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.839 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds