Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46595 * 2 1 4 4 N 1.46496 * 109.47112 * 120.00117 * 2 1 3 5 5 C 1.46506 * 119.99759 * 299.99885 * 4 2 1 6 6 S 1.65599 * 120.00096 * 120.00384 * 4 2 1 7 7 O 1.42101 * 106.40069 * 23.53574 * 6 4 2 8 8 O 1.42101 * 106.40241 * 156.45778 * 6 4 2 9 9 C 1.76196 * 107.21563 * 269.99739 * 6 4 2 10 10 C 1.38363 * 119.85452 * 269.72761 * 9 6 4 11 11 C 1.37956 * 120.14498 * 179.72626 * 10 9 6 12 12 C 1.39580 * 119.85432 * 0.54644 * 11 10 9 13 13 C 1.47846 * 120.14678 * 179.70342 * 12 11 10 14 14 O 1.21545 * 119.99906 * 180.02562 * 13 12 11 15 15 N 1.34775 * 119.99924 * 0.02562 * 13 12 11 16 16 C 1.46491 * 120.00045 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47200 * 179.97438 * 16 15 13 18 18 H 1.07991 * 119.99625 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99755 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46818 * 59.99934 * 21 19 17 23 23 H 1.48494 * 109.47445 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47125 * 300.00317 * 21 19 17 25 25 C 1.39579 * 119.70899 * 359.72724 * 12 11 10 26 26 C 1.37962 * 119.85460 * 359.97438 * 25 12 11 27 27 H 1.08993 * 109.47250 * 299.99624 * 1 2 3 28 28 H 1.08998 * 109.47223 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46748 * 240.00198 * 2 1 3 31 31 H 1.08993 * 109.47015 * 60.00232 * 3 2 1 32 32 H 1.09000 * 109.46385 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47314 * 299.99918 * 3 2 1 34 34 H 1.09001 * 109.47060 * 90.00688 * 5 4 2 35 35 H 1.09004 * 109.47073 * 210.00177 * 5 4 2 36 36 H 1.09000 * 109.47212 * 330.00260 * 5 4 2 37 37 H 1.07996 * 119.92712 * 0.02562 * 10 9 6 38 38 H 1.07997 * 120.07504 * 180.24794 * 11 10 9 39 39 H 0.97006 * 119.99938 * 0.02562 * 15 13 12 40 40 H 1.08999 * 109.47872 * 300.00159 * 16 15 13 41 41 H 1.09001 * 109.47308 * 60.00488 * 16 15 13 42 42 H 0.97003 * 120.00035 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.07137 * 179.97438 * 25 12 11 44 44 H 1.07993 * 119.93144 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1900 2.5267 6 16 2.9705 -2.0370 1.0442 7 8 3.5794 -1.9552 -0.2371 8 8 3.7119 -2.1425 2.2518 9 6 1.8962 -3.4327 0.9963 10 6 1.5443 -4.0717 2.1721 11 6 0.6991 -5.1616 2.1421 12 6 0.2078 -5.6265 0.9211 13 6 -0.6932 -6.7980 0.8809 14 8 -1.1191 -7.2008 -0.1838 15 7 -1.0423 -7.4192 2.0249 16 6 -1.9355 -8.5796 1.9851 17 6 -2.1660 -9.0844 3.3863 18 1 -1.6947 -8.5899 4.2227 19 6 -2.9787 -10.1775 3.6002 20 7 -3.5523 -10.7800 2.5816 21 14 -3.2651 -10.8027 5.3370 22 1 -3.8858 -9.7288 6.1536 23 1 -4.1694 -11.9798 5.2966 24 1 -1.9672 -11.1967 5.9416 25 6 0.5712 -4.9808 -0.2618 26 6 1.4123 -3.8881 -0.2173 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.7376 -0.6593 2.8568 35 1 2.4629 -0.4292 3.2292 36 1 1.5294 0.8907 2.4843 37 1 1.9283 -3.7135 3.1157 38 1 0.4220 -5.6570 3.0608 39 1 -0.7027 -7.0974 2.8747 40 1 -2.8881 -8.2901 1.5415 41 1 -1.4804 -9.3681 1.3857 42 1 -4.1237 -11.5492 2.7321 43 1 0.1948 -5.3358 -1.2098 44 1 1.6946 -3.3879 -1.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342684275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -112.169624 kcal Electronic energy + Delta-G solvation = -27123.005817 eV Core-core repulsion = 23166.266200 eV Total energy + Delta-G solvation = -3956.739617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30847 -39.43036 -38.60640 -38.33510 -37.03719 -36.33580 -34.54590 -32.74478 -32.55114 -32.22206 -29.38394 -27.99538 -27.34389 -25.95967 -24.42226 -23.68391 -22.11824 -21.67044 -20.06630 -19.71155 -19.08779 -18.55224 -17.85462 -17.48991 -17.00838 -16.53059 -16.33397 -16.02143 -15.85821 -15.49287 -15.32443 -15.12384 -14.97377 -14.65705 -14.35703 -14.19244 -13.99206 -13.79915 -13.78036 -13.63857 -13.55996 -13.25969 -12.98717 -12.94942 -12.78688 -12.70291 -12.41117 -12.33446 -12.27316 -12.18687 -12.08670 -11.66286 -11.56030 -11.09888 -10.83800 -10.64228 -10.23409 -10.05905 -9.95697 -8.31941 -6.49181 -0.90434 -0.62926 0.13389 1.42724 1.46259 1.48309 1.54745 1.92111 2.18398 2.42351 2.49685 2.66903 3.03309 3.12062 3.56209 3.65484 3.72875 3.75881 4.10881 4.13725 4.19962 4.26096 4.39110 4.41476 4.73901 4.76049 4.79732 4.80209 4.84639 4.86097 4.87200 5.00006 5.02423 5.06942 5.14540 5.16709 5.21723 5.35177 5.43368 5.46421 5.55043 5.61191 5.67186 5.78330 6.58088 6.70323 7.14217 7.28804 8.79934 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.002324 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.375518 B =12046.456724 C =12331.642425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.988 5.988 5 C 0.071 3.929 6 S 2.709 3.291 7 O -0.976 6.976 8 O -0.973 6.973 9 C -0.662 4.662 10 C -0.024 4.024 11 C -0.105 4.105 12 C -0.085 4.085 13 C 0.532 3.468 14 O -0.589 6.589 15 N -0.694 5.694 16 C 0.264 3.736 17 C -0.559 4.559 18 H 0.086 0.914 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.094 4.094 26 C -0.025 4.025 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.409 0.591 40 H -0.006 1.006 41 H -0.008 1.008 42 H 0.270 0.730 43 H 0.139 0.861 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 27.730 0.172 30.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 C -0.218 4.218 4 N -0.829 5.829 5 C -0.074 4.074 6 S 2.799 3.201 7 O -0.966 6.966 8 O -0.963 6.963 9 C -0.748 4.748 10 C -0.042 4.042 11 C -0.124 4.124 12 C -0.088 4.088 13 C 0.319 3.681 14 O -0.472 6.472 15 N -0.343 5.343 16 C 0.142 3.858 17 C -0.597 4.597 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.114 4.114 26 C -0.044 4.044 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.247 0.753 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.078 0.922 43 H 0.157 0.843 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.030 27.246 -0.625 29.790 hybrid contribution -1.100 -1.376 0.609 1.864 sum 10.929 25.870 -0.016 28.084 Atomic orbital electron populations 1.22189 0.93790 1.02480 1.03755 1.21171 0.95463 0.94854 0.86027 1.22141 1.01341 0.94465 1.03872 1.57368 1.70121 1.41819 1.13549 1.21853 1.01946 1.02641 0.80924 1.01437 0.73391 0.72657 0.72582 1.93549 1.74030 1.86575 1.42451 1.93547 1.68587 1.86646 1.47494 1.31372 1.20712 1.22950 0.99749 1.21142 0.92388 0.92721 0.97997 1.21713 0.96623 0.96912 0.97191 1.20342 0.97301 0.94840 0.96312 1.18931 0.81282 0.83797 0.84074 1.90718 1.57412 1.67792 1.31241 1.46171 1.48113 1.31310 1.08750 1.18662 0.87440 0.82332 0.97352 1.21554 1.30931 1.14918 0.92266 0.89613 1.26060 0.94598 0.96235 1.02574 1.70124 1.31484 1.21797 1.33345 0.85200 0.78556 0.77788 0.77653 1.18496 1.21140 1.18687 1.21473 0.96734 0.95077 0.98077 1.21050 0.91952 0.94032 0.97411 0.91040 0.90141 0.93095 0.88640 0.90754 0.92846 0.89899 0.91331 0.89976 0.88186 0.81069 0.82545 0.75318 0.98807 0.98984 0.92154 0.84275 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.19 71.98 0.66 -0.82 16 2 C 0.13 1.41 3.24 44.99 0.15 1.55 16 3 C -0.16 -1.26 9.17 71.98 0.66 -0.60 16 4 N -0.99 -12.61 3.07 -516.49 -1.59 -14.20 16 5 C 0.07 0.60 9.72 127.77 1.24 1.85 16 6 S 2.71 51.08 5.69 -56.49 -0.32 50.76 16 7 O -0.98 -22.89 15.83 -128.00 -2.03 -24.92 16 8 O -0.97 -22.18 15.86 -128.00 -2.03 -24.21 16 9 C -0.66 -13.45 5.98 22.33 0.13 -13.32 16 10 C -0.02 -0.47 9.50 22.23 0.21 -0.26 16 11 C -0.11 -2.50 9.54 22.53 0.21 -2.28 16 12 C -0.08 -2.62 5.87 -20.09 -0.12 -2.73 16 13 C 0.53 22.05 7.77 86.79 0.67 22.72 16 14 O -0.59 -29.55 16.35 -3.86 -0.06 -29.61 16 15 N -0.69 -29.35 5.50 -469.73 -2.58 -31.94 16 16 C 0.26 14.35 5.43 85.64 0.46 14.81 16 17 C -0.56 -29.80 9.28 25.60 0.24 -29.56 16 18 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 21 Si 0.99 41.47 29.54 68.60 2.03 43.49 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 C -0.09 -2.59 9.60 22.53 0.22 -2.37 16 26 C -0.03 -0.55 9.50 22.23 0.21 -0.34 16 27 H 0.07 0.52 7.67 -2.39 -0.02 0.51 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 1.15 6.91 -2.39 -0.02 1.14 16 31 H 0.07 0.41 6.66 -2.39 -0.02 0.39 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 0.78 7.02 -2.38 -0.02 0.76 16 36 H 0.10 0.46 6.43 -2.39 -0.02 0.45 16 37 H 0.17 2.45 7.60 -2.91 -0.02 2.42 16 38 H 0.16 3.08 6.41 -2.91 -0.02 3.06 16 39 H 0.41 14.02 6.36 -92.70 -0.59 13.43 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.14 3.94 7.65 -2.91 -0.02 3.92 16 44 H 0.16 2.79 7.60 -2.91 -0.02 2.77 16 Total: -1.00 -77.69 378.90 -0.45 -78.14 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.43 Total: 18.07 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 5.42 Total: -10.59 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -3.88 Total: -101.13 kcal Atomic # 8 Polarization: -74.62 SS G_CDS: -4.12 Total: -78.74 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.32 Total: 50.76 kcal Total: -77.69 -0.45 -78.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342684275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.030 kcal (2) G-P(sol) polarization free energy of solvation -77.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds