Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47341 * 2 1 4 4 C 1.52999 * 109.47187 * 303.33855 * 3 2 1 5 5 C 1.52999 * 109.47274 * 296.08191 * 4 3 2 6 6 C 1.53000 * 109.47098 * 63.33977 * 3 2 1 7 7 N 1.46498 * 109.46840 * 68.37104 * 6 3 2 8 8 C 1.46508 * 120.00152 * 273.00363 * 7 6 3 9 9 C 1.50695 * 109.46912 * 103.71415 * 8 7 6 10 10 H 1.08002 * 120.00107 * 2.93811 * 9 8 7 11 11 C 1.37878 * 120.00023 * 182.94272 * 9 8 7 12 12 N 1.31512 * 119.99856 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99690 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47020 * 90.00707 * 13 11 9 15 15 H 1.48508 * 109.46943 * 210.00340 * 13 11 9 16 16 H 1.48493 * 109.47335 * 330.00179 * 13 11 9 17 17 S 1.65604 * 120.00110 * 93.01050 * 7 6 3 18 18 O 1.42100 * 106.39948 * 203.53773 * 17 7 6 19 19 O 1.42095 * 106.39934 * 336.45359 * 17 7 6 20 20 C 1.76201 * 107.21892 * 89.99582 * 17 7 6 21 21 C 1.35048 * 125.61410 * 89.99867 * 20 17 7 22 22 C 1.40473 * 107.10713 * 179.97438 * 21 20 17 23 23 C 1.36549 * 106.70995 * 0.02562 * 22 21 20 24 24 C 1.43193 * 125.98849 * 180.02562 * 23 22 21 25 25 N 9.52330 * 93.92261 * 34.50235 * 2 1 3 26 26 O 1.34045 * 125.61639 * 269.69105 * 20 17 7 27 27 H 1.09002 * 109.47280 * 305.08323 * 1 2 3 28 28 H 1.09005 * 109.47133 * 65.07654 * 1 2 3 29 29 H 1.08992 * 109.47301 * 185.08008 * 1 2 3 30 30 H 1.08997 * 109.47104 * 240.00107 * 2 1 3 31 31 H 1.08998 * 109.47199 * 120.00010 * 2 1 3 32 32 H 1.09005 * 109.47199 * 183.34104 * 3 2 1 33 33 H 1.09005 * 109.46799 * 56.08192 * 4 3 2 34 34 H 1.09004 * 109.47000 * 176.07647 * 4 3 2 35 35 H 1.09004 * 109.46995 * 185.13723 * 5 4 3 36 36 H 1.08996 * 109.47175 * 305.13067 * 5 4 3 37 37 H 1.09001 * 109.47179 * 65.13467 * 5 4 3 38 38 H 1.08998 * 109.47156 * 188.37269 * 6 3 2 39 39 H 1.08995 * 109.46938 * 308.37212 * 6 3 2 40 40 H 1.08996 * 109.47319 * 223.71572 * 8 7 6 41 41 H 1.09001 * 109.46571 * 343.71828 * 8 7 6 42 42 H 0.97008 * 119.99643 * 179.97438 * 12 11 9 43 43 H 1.08002 * 126.44989 * 359.96419 * 21 20 17 44 44 H 1.08008 * 126.64445 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4626 2.1876 -1.2051 5 6 1.9817 1.5502 -2.4955 6 6 1.5998 2.1391 1.2891 7 7 2.3093 1.5517 2.4283 8 6 1.7660 0.3674 3.0981 9 6 2.5500 -0.8499 2.6803 10 1 3.4003 -0.7451 2.0227 11 6 2.1817 -2.0974 3.1375 12 7 2.8662 -3.1597 2.7732 13 14 0.7114 -2.2786 4.2754 14 1 -0.5172 -2.4856 3.4674 15 1 0.9184 -3.4461 5.1696 16 1 0.5643 -1.0483 5.0937 17 16 3.7255 2.2265 2.9591 18 8 4.4304 1.1969 3.6390 19 8 4.2667 2.9420 1.8571 20 6 3.3060 3.4297 4.1760 21 6 3.1906 3.2002 5.5018 22 6 2.8449 4.4213 6.1041 23 6 2.7655 5.3449 5.1015 24 6 2.4395 6.7305 5.2577 25 7 2.1814 7.8298 5.3817 26 8 3.0545 4.7249 3.9391 27 1 -0.3634 0.5907 0.8410 28 1 -0.3634 0.4331 -0.9320 29 1 -0.3633 -1.0235 0.0910 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.1284 1.4431 -0.0599 33 1 0.3745 2.1273 -1.1822 34 1 1.7695 3.2329 -1.1671 35 1 1.6446 2.1355 -3.3510 36 1 3.0713 1.5282 -2.4771 37 1 1.5991 0.5329 -2.5777 38 1 1.8321 3.2021 1.2253 39 1 0.5260 2.0093 1.4238 40 1 1.8406 0.4945 4.1781 41 1 0.7203 0.2397 2.8186 42 1 2.6073 -4.0374 3.0952 43 1 3.3366 2.2555 6.0046 44 1 2.6748 4.5958 7.1563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344409532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -20.080811 kcal Electronic energy + Delta-G solvation = -28838.642657 eV Core-core repulsion = 24885.896311 eV Total energy + Delta-G solvation = -3952.746346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.01259 -38.05907 -37.08787 -36.90087 -35.46669 -34.67344 -33.60919 -32.54545 -30.70634 -30.53413 -29.07852 -26.69160 -24.14049 -23.63192 -22.88150 -22.49414 -22.06587 -19.81557 -18.97562 -18.65586 -17.48651 -17.16798 -16.86287 -16.41084 -15.80364 -15.04461 -14.79925 -14.56040 -14.39559 -13.98248 -13.87391 -13.81283 -13.69344 -13.47481 -13.40068 -12.85802 -12.79486 -12.56888 -12.27748 -12.18853 -11.84092 -11.75215 -11.66575 -11.52571 -11.39940 -11.38413 -11.04907 -10.82594 -10.76578 -10.59824 -10.50506 -10.34969 -9.97248 -9.82436 -9.78705 -9.37471 -9.24958 -8.61419 -8.29147 -6.17933 -4.14008 0.26255 0.55875 1.64854 1.72889 2.53882 2.84495 3.18186 3.24407 3.25892 3.35513 3.75562 4.05386 4.28360 4.41543 4.77319 4.97859 5.07346 5.11189 5.18604 5.23714 5.37067 5.41987 5.45817 5.75903 5.79765 5.84559 5.96439 6.02674 6.07481 6.16590 6.22024 6.29066 6.31979 6.34627 6.50700 6.51346 6.60379 6.73375 6.80432 6.91546 6.93091 7.06357 7.19907 7.39271 7.76564 8.36023 8.86688 9.38368 10.94098 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.005052 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.184520 B = 5541.407750 C = 7159.432136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.165 4.165 3 C -0.099 4.099 4 C -0.120 4.120 5 C -0.149 4.149 6 C 0.128 3.872 7 N -0.964 5.964 8 C 0.221 3.779 9 C -0.526 4.526 10 H 0.088 0.912 11 C 0.081 3.919 12 N -0.883 5.883 13 Si 0.865 3.135 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.265 1.265 17 S 2.696 3.304 18 O -0.896 6.896 19 O -0.945 6.945 20 C -0.531 4.531 21 C -0.099 4.099 22 C -0.138 4.138 23 C 0.069 3.931 24 C 0.291 3.709 25 N -0.368 5.368 26 O -0.100 6.100 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.027 0.973 41 H 0.043 0.957 42 H 0.266 0.734 43 H 0.182 0.818 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 11.224 1.277 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.119 4.119 4 C -0.158 4.158 5 C -0.206 4.206 6 C 0.003 3.997 7 N -0.805 5.805 8 C 0.098 3.902 9 C -0.564 4.564 10 H 0.106 0.894 11 C -0.124 4.124 12 N -0.520 5.520 13 Si 0.691 3.309 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.189 1.189 17 S 2.774 3.226 18 O -0.886 6.886 19 O -0.935 6.935 20 C -0.658 4.658 21 C -0.119 4.119 22 C -0.161 4.161 23 C 0.013 3.987 24 C -0.025 4.025 25 N -0.046 5.046 26 O 0.008 5.992 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.200 0.800 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.536 12.708 0.990 13.228 hybrid contribution -1.199 -0.352 1.178 1.717 sum -4.735 12.356 2.167 13.409 Atomic orbital electron populations 1.21788 0.97654 1.00799 0.99881 1.22416 0.94957 0.95807 1.06990 1.21559 1.00931 0.96611 0.92827 1.21580 1.00567 0.98948 0.94755 1.21756 1.01249 1.00882 0.96753 1.21451 0.97527 0.95737 0.84996 1.57330 1.44375 1.38534 1.40237 1.19672 0.96060 0.82571 0.91869 1.21171 1.15205 0.89363 1.30705 0.89430 1.24793 0.96331 0.95742 0.95523 1.69879 1.39373 0.98730 1.44038 0.87040 0.83632 0.78498 0.81706 1.19889 1.20939 1.18926 1.02900 0.73950 0.72452 0.73314 1.93741 1.68324 1.50900 1.75597 1.93568 1.75964 1.74474 1.49536 1.37478 1.17161 0.94442 1.16700 1.22024 0.97289 1.00598 0.92003 1.22126 1.02500 0.91187 1.00328 1.17136 1.07928 0.87318 0.86307 1.23466 0.94164 0.89736 0.95178 1.81344 1.08090 1.09664 1.05517 1.84274 1.65428 1.19069 1.30391 0.93243 0.94258 0.93496 0.93401 0.83862 0.90794 0.91882 0.92596 0.93640 0.92802 0.92413 0.91237 0.90103 0.95525 0.93872 0.92356 0.80044 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.16 37.16 0.34 -1.88 16 2 C -0.17 -2.90 5.09 -26.73 -0.14 -3.04 16 3 C -0.10 -1.58 2.36 -90.62 -0.21 -1.79 16 4 C -0.12 -1.58 5.09 -26.73 -0.14 -1.72 16 5 C -0.15 -1.89 9.51 37.16 0.35 -1.53 16 6 C 0.13 1.94 4.69 -4.04 -0.02 1.92 16 7 N -0.96 -16.80 2.73 -115.66 -0.32 -17.11 16 8 C 0.22 4.37 3.57 -5.19 -0.02 4.35 16 9 C -0.53 -12.78 5.88 -34.44 -0.20 -12.98 16 10 H 0.09 2.38 7.73 -52.49 -0.41 1.97 16 11 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.88 -24.62 13.96 55.43 0.77 -23.85 16 13 Si 0.86 18.83 27.41 -169.99 -4.66 14.17 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.26 -5.34 6.63 56.52 0.37 -4.97 16 17 S 2.70 47.42 5.76 -107.50 -0.62 46.80 16 18 O -0.90 -18.48 16.27 -57.17 -0.93 -19.41 16 19 O -0.95 -17.88 16.89 -57.26 -0.97 -18.85 16 20 C -0.53 -7.68 7.35 29.60 0.22 -7.46 16 21 C -0.10 -1.20 10.59 -39.87 -0.42 -1.62 16 22 C -0.14 -1.38 10.84 -39.35 -0.43 -1.80 16 23 C 0.07 0.80 7.08 -38.27 -0.27 0.53 16 24 C 0.29 3.31 15.88 -22.48 -0.36 2.95 16 25 N -0.37 -4.63 18.54 41.84 0.78 -3.85 16 26 O -0.10 -1.40 10.67 4.80 0.05 -1.35 16 27 H 0.05 0.72 5.68 -51.93 -0.29 0.42 16 28 H 0.04 0.52 6.58 -51.93 -0.34 0.18 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.84 6.82 -51.93 -0.35 0.48 16 31 H 0.14 3.02 3.05 -51.93 -0.16 2.86 16 32 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 33 H 0.06 0.76 6.26 -51.93 -0.33 0.44 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.75 6.87 -51.93 -0.36 0.39 16 38 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 39 H 0.08 1.09 5.81 -51.93 -0.30 0.78 16 40 H 0.03 0.51 7.40 -51.93 -0.38 0.13 16 41 H 0.04 0.81 6.63 -51.93 -0.34 0.46 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -29.46 371.12 -7.47 -36.93 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.78 Total: 3.04 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.39 Total: -22.11 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 1.23 Total: -44.81 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.85 Total: -39.61 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.66 Total: 14.17 kcal Atomic # 16 Polarization: 47.42 SS G_CDS: -0.62 Total: 46.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.46 -7.47 -36.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344409532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.847 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds