Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 C 1.52999 * 109.47453 * 120.00010 * 2 1 3 5 5 H 1.09004 * 109.46771 * 54.67205 * 4 2 1 6 6 N 1.46500 * 109.47084 * 294.67750 * 4 2 1 7 7 S 1.65598 * 120.00238 * 126.01058 * 6 4 2 8 8 C 1.81406 * 104.44875 * 65.71194 * 7 6 4 9 9 O 1.42099 * 104.27958 * 181.78054 * 7 6 4 10 10 O 1.42103 * 104.27915 * 309.64313 * 7 6 4 11 11 C 1.50694 * 109.47445 * 174.67241 * 4 2 1 12 12 O 1.21283 * 120.00138 * 99.51849 * 11 4 2 13 13 N 1.34776 * 120.00196 * 279.51894 * 11 4 2 14 14 C 1.39245 * 120.00062 * 185.11799 * 13 11 4 15 15 C 1.39474 * 119.83306 * 213.85667 * 14 13 11 16 16 C 1.36378 * 120.16951 * 179.75731 * 15 14 13 17 17 C 1.40877 * 119.82509 * 0.52095 * 16 15 14 18 18 C 1.41151 * 120.15998 * 179.71686 * 17 16 15 19 19 H 1.08002 * 119.99391 * 206.43984 * 18 17 16 20 20 C 1.39904 * 120.00303 * 26.44222 * 18 17 16 21 21 N 1.30865 * 120.00082 * 15.14870 * 20 18 17 22 22 Si 1.86798 * 119.99949 * 195.15224 * 20 18 17 23 23 H 1.48507 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47224 * 119.99645 * 22 20 18 25 25 H 1.48501 * 109.47078 * 239.99777 * 22 20 18 26 26 C 1.40871 * 119.67105 * 359.73837 * 17 16 15 27 27 C 1.36377 * 119.82984 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.46926 * 303.36662 * 1 2 3 29 29 H 1.08999 * 109.47473 * 63.36720 * 1 2 3 30 30 H 1.09003 * 109.47041 * 183.36656 * 1 2 3 31 31 H 1.09008 * 109.47237 * 240.00410 * 2 1 3 32 32 H 1.09001 * 109.47339 * 183.63678 * 3 2 1 33 33 H 1.09000 * 109.47083 * 303.64193 * 3 2 1 34 34 H 1.08998 * 109.47222 * 63.64177 * 3 2 1 35 35 H 0.96998 * 120.00082 * 305.73432 * 6 4 2 36 36 H 1.08992 * 109.47359 * 59.99818 * 8 7 6 37 37 H 1.08997 * 109.47330 * 180.02562 * 8 7 6 38 38 H 1.09006 * 109.46751 * 299.99892 * 8 7 6 39 39 H 0.96997 * 120.00156 * 5.11135 * 13 11 4 40 40 H 1.07997 * 119.91571 * 0.02603 * 15 14 13 41 41 H 1.08000 * 120.08481 * 180.25325 * 16 15 14 42 42 H 0.97006 * 120.00185 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.08467 * 179.97438 * 26 17 16 44 44 H 1.08000 * 119.91588 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6008 -1.7177 1.2982 6 7 1.6591 0.0394 2.4419 7 16 0.8257 -0.7022 3.6658 8 6 1.9884 -1.9273 4.3277 9 8 0.5991 0.3327 4.6128 10 8 -0.2585 -1.3466 3.0112 11 6 3.5412 -0.8365 1.1850 12 8 4.2362 -0.0558 1.8001 13 7 4.1115 -1.8071 0.4440 14 6 5.4928 -1.9810 0.4686 15 6 6.1599 -2.4004 -0.6823 16 6 7.5132 -2.5682 -0.6673 17 6 8.2361 -2.3271 0.5176 18 6 9.6362 -2.5043 0.5426 19 1 10.1337 -2.7427 1.4711 20 6 10.3794 -2.3709 -0.6352 21 7 9.8451 -1.8010 -1.6851 22 14 12.1344 -3.0064 -0.7091 23 1 12.5003 -3.6034 0.6005 24 1 12.2428 -4.0382 -1.7716 25 1 13.0554 -1.8824 -1.0149 26 6 7.5545 -1.9089 1.6774 27 6 6.2017 -1.7399 1.6454 28 1 -0.3633 0.5652 0.8583 29 1 -0.3634 0.4607 -0.9186 30 1 -0.3633 -1.0259 0.0604 31 1 1.8933 -0.5138 -0.8901 32 1 3.1280 1.4432 -0.0652 33 1 1.6243 1.9748 -0.8555 34 1 1.7309 1.9372 0.9208 35 1 1.8986 0.9764 2.5166 36 1 2.8816 -1.4204 4.6925 37 1 1.5173 -2.4694 5.1476 38 1 2.2646 -2.6286 3.5402 39 1 3.5597 -2.3847 -0.1063 40 1 5.6038 -2.5887 -1.5887 41 1 8.0289 -2.8891 -1.5604 42 1 10.3602 -1.7088 -2.5018 43 1 8.1020 -1.7227 2.5895 44 1 5.6777 -1.4198 2.5339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349821547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -91.568348 kcal Electronic energy + Delta-G solvation = -27908.749195 eV Core-core repulsion = 23952.902916 eV Total energy + Delta-G solvation = -3955.846278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22054 -37.89265 -37.26787 -36.48548 -36.11657 -34.56936 -33.07609 -32.74115 -29.72721 -29.62830 -29.22955 -27.27529 -27.19801 -24.73242 -21.94487 -21.05319 -20.63553 -19.75827 -19.58646 -18.07718 -17.52731 -17.33652 -16.64045 -16.20427 -15.99333 -15.32003 -15.19653 -15.04446 -14.54951 -14.04566 -13.99231 -13.53885 -13.48483 -13.34839 -12.90873 -12.75361 -12.54595 -12.34856 -12.26388 -12.20250 -12.17600 -12.08436 -11.90888 -11.48187 -11.38057 -11.29924 -11.20264 -11.11763 -11.04693 -10.98384 -10.79221 -10.33071 -9.93571 -9.66992 -9.40363 -9.12525 -8.92294 -7.63745 -7.06296 -6.80731 -4.38521 0.06566 2.32700 2.49996 2.89156 3.00538 3.03536 3.08545 3.22310 3.47545 3.70018 3.87834 3.98615 4.44934 4.54359 4.56160 4.60025 4.68075 4.83220 4.96722 5.12984 5.40795 5.45019 5.54080 5.58071 5.61775 5.77906 5.83682 5.96059 6.11076 6.19966 6.22435 6.30722 6.66573 6.78098 6.83417 6.96489 7.09607 7.19179 7.50389 7.62008 7.77997 7.95209 8.16963 8.19390 8.50646 8.62307 8.80871 8.90401 10.11517 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002655 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.315334 B =10544.978516 C =11259.121612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.151 4.151 4 C 0.140 3.860 5 H 0.109 0.891 6 N -1.093 6.093 7 S 2.612 3.388 8 C -0.674 4.674 9 O -0.958 6.958 10 O -0.955 6.955 11 C 0.481 3.519 12 O -0.517 6.517 13 N -0.647 5.647 14 C -0.009 4.009 15 C -0.112 4.112 16 C -0.151 4.151 17 C 0.107 3.893 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.793 5.793 22 Si 0.910 3.090 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.215 4.215 27 C -0.076 4.076 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.425 0.575 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.395 0.605 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.281 0.719 43 H 0.094 0.906 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 -0.524 2.553 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.208 4.208 4 C 0.028 3.972 5 H 0.127 0.873 6 N -0.852 5.852 7 S 2.704 3.296 8 C -0.824 4.824 9 O -0.949 6.949 10 O -0.945 6.945 11 C 0.265 3.735 12 O -0.393 6.393 13 N -0.291 5.291 14 C -0.102 4.102 15 C -0.132 4.132 16 C -0.171 4.171 17 C 0.104 3.896 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.144 4.144 21 N -0.419 5.419 22 Si 0.734 3.266 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.236 4.236 27 C -0.096 4.096 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.229 0.771 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.903 0.125 3.052 16.193 hybrid contribution 1.459 -0.445 -0.417 1.582 sum -14.443 -0.319 2.635 14.685 Atomic orbital electron populations 1.21829 0.93620 1.02730 1.02016 1.21323 0.96961 0.97441 0.95592 1.21848 1.02064 0.94982 1.01942 1.20784 0.92385 0.96588 0.87424 0.87339 1.55392 1.75994 1.22841 1.30998 1.04797 0.75380 0.75649 0.73782 1.30556 1.19112 1.19093 1.13651 1.93621 1.84713 1.54193 1.62357 1.93622 1.49370 1.77857 1.73603 1.20917 0.90078 0.81193 0.81293 1.90705 1.63634 1.40827 1.44094 1.43041 1.07220 1.32936 1.45867 1.17127 0.80928 1.16795 0.95322 1.20227 0.95112 1.03465 0.94393 1.20920 0.91541 1.04841 0.99820 1.17677 0.93333 0.87607 0.91001 1.19610 0.92193 1.41710 0.95087 0.90322 1.25928 1.00867 0.92639 0.94987 1.69832 1.38469 1.30486 1.03079 0.86236 0.81506 0.79330 0.79521 1.18388 1.19694 1.19960 1.20659 0.93476 1.10210 0.99210 1.20197 0.94336 0.99800 0.95251 0.92247 0.92362 0.91863 0.89544 0.91727 0.92208 0.92288 0.73771 0.84754 0.85351 0.85471 0.77107 0.89109 0.86041 0.90857 0.88733 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.04 37.15 0.34 -0.94 16 2 C -0.09 -0.89 2.73 -90.62 -0.25 -1.14 16 3 C -0.15 -1.59 8.72 37.16 0.32 -1.27 16 4 C 0.14 1.48 2.31 -69.09 -0.16 1.32 16 5 H 0.11 0.88 7.56 -51.93 -0.39 0.48 16 6 N -1.09 -11.28 4.20 -5.88 -0.02 -11.31 16 7 S 2.61 26.19 6.00 -107.50 -0.64 25.54 16 8 C -0.67 -5.53 10.90 101.05 1.10 -4.43 16 9 O -0.96 -12.73 18.08 -57.54 -1.04 -13.77 16 10 O -0.95 -11.28 17.52 -57.54 -1.01 -12.29 16 11 C 0.48 7.05 5.91 -10.99 -0.06 6.99 16 12 O -0.52 -9.57 14.06 5.56 0.08 -9.50 16 13 N -0.65 -9.88 5.31 -9.74 -0.05 -9.93 16 14 C -0.01 -0.19 6.28 -83.57 -0.52 -0.72 16 15 C -0.11 -2.40 9.89 -39.79 -0.39 -2.79 16 16 C -0.15 -3.71 8.62 -39.25 -0.34 -4.05 16 17 C 0.11 2.74 5.56 -106.80 -0.59 2.15 16 18 C -0.46 -11.75 9.04 -37.85 -0.34 -12.10 16 19 H 0.08 1.95 7.89 -52.49 -0.41 1.54 16 20 C 0.07 1.79 5.18 -17.34 -0.09 1.70 16 21 N -0.79 -19.88 10.92 55.55 0.61 -19.27 16 22 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 26 C -0.22 -5.22 9.74 -39.26 -0.38 -5.61 16 27 C -0.08 -1.70 8.57 -39.79 -0.34 -2.04 16 28 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.06 0.85 7.36 -51.93 -0.38 0.47 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.59 6.44 -51.93 -0.33 0.25 16 35 H 0.42 4.35 7.11 -34.46 -0.25 4.11 16 36 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.40 4.55 8.81 -40.82 -0.36 4.19 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.12 3.07 6.19 -52.49 -0.33 2.75 16 42 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 43 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.10 2.14 6.44 -52.49 -0.34 1.80 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -32.97 376.58 -9.29 -42.27 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.14 Total: 12.41 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -1.72 Total: -22.92 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.53 Total: -40.51 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.97 Total: -35.55 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 26.19 SS G_CDS: -0.64 Total: 25.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.97 -9.29 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349821547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.300 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds