Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 C 1.52999 * 109.47453 * 120.00010 * 2 1 3 5 5 H 1.09004 * 109.46771 * 54.67205 * 4 2 1 6 6 N 1.46500 * 109.47084 * 294.67750 * 4 2 1 7 7 S 1.65598 * 120.00238 * 126.01058 * 6 4 2 8 8 C 1.81406 * 104.44875 * 65.71194 * 7 6 4 9 9 O 1.42099 * 104.27958 * 181.78054 * 7 6 4 10 10 O 1.42103 * 104.27915 * 309.64313 * 7 6 4 11 11 C 1.50694 * 109.47445 * 174.67241 * 4 2 1 12 12 O 1.21283 * 120.00138 * 99.51849 * 11 4 2 13 13 N 1.34776 * 120.00196 * 279.51894 * 11 4 2 14 14 C 1.39245 * 120.00062 * 185.11799 * 13 11 4 15 15 C 1.39474 * 119.83306 * 213.85667 * 14 13 11 16 16 C 1.36378 * 120.16951 * 179.75731 * 15 14 13 17 17 C 1.40877 * 119.82509 * 0.52095 * 16 15 14 18 18 C 1.41151 * 120.15998 * 179.71686 * 17 16 15 19 19 H 1.08002 * 119.99391 * 206.43984 * 18 17 16 20 20 C 1.39904 * 120.00303 * 26.44222 * 18 17 16 21 21 N 1.30865 * 120.00082 * 15.14870 * 20 18 17 22 22 Si 1.86798 * 119.99949 * 195.15224 * 20 18 17 23 23 H 1.48507 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47224 * 119.99645 * 22 20 18 25 25 H 1.48501 * 109.47078 * 239.99777 * 22 20 18 26 26 C 1.40871 * 119.67105 * 359.73837 * 17 16 15 27 27 C 1.36377 * 119.82984 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.46926 * 303.36662 * 1 2 3 29 29 H 1.08999 * 109.47473 * 63.36720 * 1 2 3 30 30 H 1.09003 * 109.47041 * 183.36656 * 1 2 3 31 31 H 1.09008 * 109.47237 * 240.00410 * 2 1 3 32 32 H 1.09001 * 109.47339 * 183.63678 * 3 2 1 33 33 H 1.09000 * 109.47083 * 303.64193 * 3 2 1 34 34 H 1.08998 * 109.47222 * 63.64177 * 3 2 1 35 35 H 0.96998 * 120.00082 * 305.73432 * 6 4 2 36 36 H 1.08992 * 109.47359 * 59.99818 * 8 7 6 37 37 H 1.08997 * 109.47330 * 180.02562 * 8 7 6 38 38 H 1.09006 * 109.46751 * 299.99892 * 8 7 6 39 39 H 0.96997 * 120.00156 * 5.11135 * 13 11 4 40 40 H 1.07997 * 119.91571 * 0.02603 * 15 14 13 41 41 H 1.08000 * 120.08481 * 180.25325 * 16 15 14 42 42 H 0.97006 * 120.00185 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.08467 * 179.97438 * 26 17 16 44 44 H 1.08000 * 119.91588 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6008 -1.7177 1.2982 6 7 1.6591 0.0394 2.4419 7 16 0.8257 -0.7022 3.6658 8 6 1.9884 -1.9273 4.3277 9 8 0.5991 0.3327 4.6128 10 8 -0.2585 -1.3466 3.0112 11 6 3.5412 -0.8365 1.1850 12 8 4.2362 -0.0558 1.8001 13 7 4.1115 -1.8071 0.4440 14 6 5.4928 -1.9810 0.4686 15 6 6.1599 -2.4004 -0.6823 16 6 7.5132 -2.5682 -0.6673 17 6 8.2361 -2.3271 0.5176 18 6 9.6362 -2.5043 0.5426 19 1 10.1337 -2.7427 1.4711 20 6 10.3794 -2.3709 -0.6352 21 7 9.8451 -1.8010 -1.6851 22 14 12.1344 -3.0064 -0.7091 23 1 12.5003 -3.6034 0.6005 24 1 12.2428 -4.0382 -1.7716 25 1 13.0554 -1.8824 -1.0149 26 6 7.5545 -1.9089 1.6774 27 6 6.2017 -1.7399 1.6454 28 1 -0.3633 0.5652 0.8583 29 1 -0.3634 0.4607 -0.9186 30 1 -0.3633 -1.0259 0.0604 31 1 1.8933 -0.5138 -0.8901 32 1 3.1280 1.4432 -0.0652 33 1 1.6243 1.9748 -0.8555 34 1 1.7309 1.9372 0.9208 35 1 1.8986 0.9764 2.5166 36 1 2.8816 -1.4204 4.6925 37 1 1.5173 -2.4694 5.1476 38 1 2.2646 -2.6286 3.5402 39 1 3.5597 -2.3847 -0.1063 40 1 5.6038 -2.5887 -1.5887 41 1 8.0289 -2.8891 -1.5604 42 1 10.3602 -1.7088 -2.5018 43 1 8.1020 -1.7227 2.5895 44 1 5.6777 -1.4198 2.5339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349821547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -115.479179 kcal Electronic energy + Delta-G solvation = -27909.786046 eV Core-core repulsion = 23952.902916 eV Total energy + Delta-G solvation = -3956.883130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47930 -39.39725 -38.22883 -37.61735 -37.02306 -36.14023 -34.72236 -33.57813 -31.47886 -30.94409 -30.32379 -28.38834 -28.04126 -26.34609 -23.51466 -22.68420 -21.77532 -20.93181 -20.45730 -19.30460 -18.94490 -18.65316 -17.74986 -17.33818 -17.00080 -16.93208 -16.32241 -16.03146 -15.71407 -15.50619 -15.13326 -14.94008 -14.51551 -14.14461 -14.10931 -14.02565 -13.92416 -13.68230 -13.36767 -13.24413 -13.20109 -13.15230 -13.07499 -12.86232 -12.81806 -12.78745 -12.47388 -12.22615 -12.14205 -11.90561 -11.75301 -11.71821 -11.42107 -11.23496 -11.10392 -10.71486 -10.20856 -9.44768 -8.82078 -8.58462 -6.27527 -0.73031 0.80306 1.15842 1.39269 1.41500 1.54180 1.59099 1.78938 2.21974 2.34674 2.76117 2.83288 3.19447 3.59537 3.74348 3.75709 3.78095 3.96180 4.04850 4.18932 4.31495 4.41933 4.51294 4.63046 4.67869 4.85600 4.90467 4.95206 4.99632 5.08873 5.13110 5.17577 5.22788 5.32752 5.40299 5.45885 5.51271 5.67670 5.89908 5.95314 6.04989 6.12023 6.39051 6.66692 6.76135 6.94631 7.00630 7.40763 8.34628 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002655 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.315334 B =10544.978516 C =11259.121612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.151 4.151 4 C 0.146 3.854 5 H 0.143 0.857 6 N -1.095 6.095 7 S 2.629 3.371 8 C -0.669 4.669 9 O -0.994 6.994 10 O -0.970 6.970 11 C 0.487 3.513 12 O -0.555 6.555 13 N -0.641 5.641 14 C 0.015 3.985 15 C -0.112 4.112 16 C -0.170 4.170 17 C 0.074 3.926 18 C -0.497 4.497 19 H 0.072 0.928 20 C 0.035 3.965 21 N -0.826 5.826 22 Si 0.982 3.018 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.269 1.269 26 C -0.233 4.233 27 C -0.087 4.087 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.424 0.576 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.418 0.582 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.288 0.712 43 H 0.091 0.909 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.234 -1.476 1.897 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.209 4.209 4 C 0.034 3.966 5 H 0.160 0.840 6 N -0.854 5.854 7 S 2.723 3.277 8 C -0.821 4.821 9 O -0.984 6.984 10 O -0.960 6.960 11 C 0.272 3.728 12 O -0.432 6.432 13 N -0.287 5.287 14 C -0.079 4.079 15 C -0.132 4.132 16 C -0.190 4.190 17 C 0.072 3.928 18 C -0.527 4.527 19 H 0.090 0.910 20 C -0.180 4.180 21 N -0.453 5.453 22 Si 0.803 3.197 23 H -0.184 1.184 24 H -0.186 1.186 25 H -0.194 1.194 26 C -0.253 4.253 27 C -0.107 4.107 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.261 0.739 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.158 0.842 39 H 0.256 0.744 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.693 -0.819 2.380 17.871 hybrid contribution 1.802 -0.095 -0.155 1.811 sum -15.891 -0.913 2.225 16.072 Atomic orbital electron populations 1.21808 0.92540 1.03191 1.02357 1.21372 0.97675 0.96585 0.95463 1.21848 1.00091 0.96241 1.02719 1.20894 0.88973 0.98602 0.88107 0.83983 1.55396 1.75690 1.22996 1.31278 1.04220 0.75262 0.75225 0.73000 1.30494 1.18188 1.18538 1.14872 1.93576 1.85509 1.56065 1.63278 1.93595 1.50667 1.77909 1.73864 1.21694 0.91768 0.79830 0.79473 1.90703 1.65045 1.42119 1.45350 1.42961 1.05244 1.33876 1.46619 1.17166 0.83336 1.13370 0.94022 1.20506 0.94266 1.02463 0.95958 1.20918 0.92959 1.06063 0.99061 1.17979 0.93957 0.88890 0.92023 1.19806 0.92858 1.44200 0.95809 0.90976 1.26709 1.04903 0.92205 0.94167 1.69872 1.40296 1.31355 1.03749 0.85157 0.76158 0.78840 0.79535 1.18394 1.18578 1.19361 1.20792 0.94605 1.10956 0.98968 1.20356 0.93834 1.00001 0.96470 0.93118 0.91061 0.91170 0.88073 0.94665 0.90879 0.92150 0.73871 0.85043 0.83010 0.84166 0.74398 0.85746 0.87403 0.90136 0.89063 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.04 71.98 0.65 -1.38 16 2 C -0.09 -1.47 2.73 -10.80 -0.03 -1.50 16 3 C -0.15 -2.95 8.72 71.98 0.63 -2.32 16 4 C 0.15 2.65 2.31 44.24 0.10 2.76 16 5 H 0.14 1.68 7.56 -2.38 -0.02 1.66 16 6 N -1.10 -20.60 4.20 -172.53 -0.73 -21.32 16 7 S 2.63 47.79 6.00 -56.49 -0.34 47.45 16 8 C -0.67 -9.17 10.90 113.37 1.24 -7.93 16 9 O -0.99 -25.57 18.08 -127.65 -2.31 -27.88 16 10 O -0.97 -20.54 17.52 -127.65 -2.24 -22.78 16 11 C 0.49 13.15 5.91 87.66 0.52 13.67 16 12 O -0.55 -19.97 14.06 -3.04 -0.04 -20.01 16 13 N -0.64 -17.75 5.31 -303.12 -1.61 -19.35 16 14 C 0.01 0.58 6.28 38.56 0.24 0.82 16 15 C -0.11 -4.67 9.89 22.13 0.22 -4.45 16 16 C -0.17 -8.49 8.62 22.48 0.19 -8.30 16 17 C 0.07 3.95 5.56 -21.27 -0.12 3.83 16 18 C -0.50 -26.69 9.04 23.39 0.21 -26.48 16 19 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 20 C 0.03 1.72 5.18 85.24 0.44 2.16 16 21 N -0.83 -42.41 10.92 21.82 0.24 -42.17 16 22 Si 0.98 37.73 29.59 68.60 2.03 39.76 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 25 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 26 C -0.23 -11.66 9.74 22.48 0.22 -11.44 16 27 C -0.09 -3.86 8.57 22.14 0.19 -3.67 16 28 H 0.05 0.83 7.86 -2.39 -0.02 0.81 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.03 0.89 7.36 -2.39 -0.02 0.87 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.13 6.44 -2.39 -0.02 1.12 16 35 H 0.42 8.28 7.11 -96.75 -0.69 7.59 16 36 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 7.92 8.81 -92.71 -0.82 7.10 16 40 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 5.62 6.19 -2.91 -0.02 5.60 16 42 H 0.29 13.29 8.30 -92.70 -0.77 12.52 16 43 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.11 4.57 6.44 -2.91 -0.02 4.55 16 Total: -1.00 -73.51 376.58 -0.76 -74.27 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.47 Total: 36.28 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 4.70 Total: -44.23 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.10 Total: -82.85 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: -4.59 Total: -70.67 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 16 Polarization: 47.79 SS G_CDS: -0.34 Total: 47.45 kcal Total: -73.51 -0.76 -74.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349821547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.211 kcal (2) G-P(sol) polarization free energy of solvation -73.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds