Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 N 1.46498 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99673 * 265.28578 * 4 3 2 6 6 H 1.08001 * 119.99945 * 53.54171 * 5 4 3 7 7 C 1.38951 * 119.99957 * 233.53472 * 5 4 3 8 8 N 1.31410 * 120.00031 * 200.52081 * 7 5 4 9 9 Si 1.86802 * 120.00026 * 20.51873 * 7 5 4 10 10 H 1.48502 * 109.47019 * 93.66420 * 9 7 5 11 11 H 1.48500 * 109.47102 * 213.66319 * 9 7 5 12 12 H 1.48498 * 109.47068 * 333.66392 * 9 7 5 13 13 C 1.34771 * 120.00482 * 85.28815 * 4 3 2 14 14 O 1.21291 * 119.99797 * 5.11736 * 13 4 3 15 15 C 1.50697 * 120.00376 * 185.11758 * 13 4 3 16 16 H 1.08998 * 109.47191 * 315.29779 * 15 13 4 17 17 C 1.53003 * 109.46895 * 75.29621 * 15 13 4 18 18 N 1.46500 * 109.47487 * 195.29236 * 15 13 4 19 19 S 1.65598 * 120.00252 * 144.99713 * 18 15 13 20 20 O 1.42091 * 106.40398 * 311.46871 * 19 18 15 21 21 O 1.42106 * 106.40408 * 178.54158 * 19 18 15 22 22 C 1.76199 * 107.21452 * 65.00661 * 19 18 15 23 23 C 1.38237 * 120.00204 * 269.72607 * 22 19 18 24 24 C 1.38234 * 120.00331 * 179.76804 * 23 22 19 25 25 C 1.38230 * 119.99892 * 0.50572 * 24 23 22 26 26 C 1.38231 * 119.99818 * 359.74576 * 25 24 23 27 27 C 1.38233 * 120.00434 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46942 * 299.99680 * 1 2 3 29 29 H 1.08992 * 109.47293 * 60.00102 * 1 2 3 30 30 H 1.08999 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47001 * 239.99836 * 2 1 3 32 32 H 1.09001 * 109.47091 * 119.99900 * 2 1 3 33 33 H 1.08998 * 109.47359 * 60.00056 * 3 2 1 34 34 H 1.09001 * 109.47099 * 299.99895 * 3 2 1 35 35 H 0.96999 * 119.99921 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47291 * 174.54693 * 17 15 13 37 37 H 1.08996 * 109.46914 * 294.54684 * 17 15 13 38 38 H 1.08999 * 109.47457 * 54.54572 * 17 15 13 39 39 H 0.97008 * 119.99908 * 325.01087 * 18 15 13 40 40 H 1.08006 * 119.99808 * 359.97438 * 23 22 19 41 41 H 1.08006 * 119.99682 * 180.23290 * 24 23 22 42 42 H 1.07998 * 120.00060 * 179.72995 * 25 24 23 43 43 H 1.08001 * 119.99903 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00204 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5399 1.1825 6 1 3.9799 0.8513 1.9873 7 6 5.1578 2.5244 1.3460 8 7 6.0803 2.3919 2.2724 9 14 5.1461 4.0363 0.2489 10 1 4.3902 5.1264 0.9163 11 1 6.5417 4.4802 0.0030 12 1 4.4972 3.7040 -1.0448 13 6 4.1785 1.3468 -1.1641 14 8 3.5752 1.3542 -2.2163 15 6 5.6809 1.2305 -1.1577 16 1 6.0980 1.9501 -0.4532 17 6 6.0811 -0.1853 -0.7377 18 7 6.1978 1.5059 -2.5006 19 16 7.6466 2.2860 -2.6863 20 8 7.6015 3.4239 -1.8365 21 8 7.8809 2.3696 -4.0854 22 6 8.8959 1.2279 -2.0351 23 6 9.2562 1.3216 -0.7038 24 6 10.2329 0.4881 -0.1917 25 6 10.8568 -0.4319 -1.0133 26 6 10.5002 -0.5221 -2.3458 27 6 9.5202 0.3081 -2.8568 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 6.7555 3.0790 2.3863 36 1 7.1615 -0.2988 -0.8261 37 1 5.7813 -0.3559 0.2962 38 1 5.5856 -0.9097 -1.3840 39 1 5.6912 1.2314 -3.2810 40 1 8.7722 2.0437 -0.0629 41 1 10.5117 0.5589 0.8494 42 1 11.6230 -1.0801 -0.6143 43 1 10.9879 -1.2406 -2.9879 44 1 9.2419 0.2379 -3.8980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352420901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -72.881438 kcal Electronic energy + Delta-G solvation = -29401.347868 eV Core-core repulsion = 25446.311915 eV Total energy + Delta-G solvation = -3955.035953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.37373 -39.05913 -36.99609 -35.61805 -35.58063 -34.72618 -33.23437 -31.58450 -31.29689 -31.02304 -29.32318 -26.25405 -24.62164 -23.23827 -23.01169 -22.72472 -21.02468 -19.55006 -19.27897 -18.26151 -17.85066 -16.74113 -16.19949 -15.91797 -15.47655 -15.28920 -14.88568 -14.55939 -14.40921 -14.18808 -13.98476 -13.61056 -13.46743 -13.19977 -13.14273 -12.83380 -12.41914 -12.31674 -12.24279 -11.93692 -11.83609 -11.81342 -11.56341 -11.40910 -11.26979 -11.24732 -11.08587 -10.91474 -10.78421 -10.67743 -10.28801 -10.04697 -9.92704 -9.48608 -9.37114 -9.03258 -8.91390 -8.62177 -7.62253 -6.57645 -4.34353 0.56652 0.88602 1.30016 3.10407 3.25856 3.39421 3.52872 3.56698 3.65566 3.99793 4.15710 4.34766 4.53714 4.79846 4.86054 4.88493 4.96849 5.31117 5.36753 5.45582 5.52305 5.56791 5.66822 5.76281 5.79043 5.85049 5.91678 5.96902 6.09114 6.11156 6.20585 6.26915 6.32047 6.32637 6.33689 6.41189 6.56892 6.71676 6.81900 6.83303 6.86101 7.37604 7.62119 7.66968 8.38526 8.88544 9.16477 9.60961 10.49338 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.004810 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.148007 B = 5819.644608 C = 5982.512340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.467 5.467 5 C -0.358 4.358 6 H 0.101 0.899 7 C 0.077 3.923 8 N -0.848 5.848 9 Si 0.819 3.181 10 H -0.279 1.279 11 H -0.232 1.232 12 H -0.257 1.257 13 C 0.498 3.502 14 O -0.587 6.587 15 C 0.135 3.865 16 H 0.117 0.883 17 C -0.152 4.152 18 N -1.100 6.100 19 S 2.683 3.317 20 O -0.948 6.948 21 O -0.966 6.966 22 C -0.672 4.672 23 C -0.010 4.010 24 C -0.137 4.137 25 C -0.067 4.067 26 C -0.146 4.146 27 C -0.021 4.021 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.279 0.721 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.422 0.578 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 -6.581 -3.795 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.188 5.188 5 C -0.485 4.485 6 H 0.119 0.881 7 C -0.132 4.132 8 N -0.481 5.481 9 Si 0.642 3.358 10 H -0.205 1.205 11 H -0.155 1.155 12 H -0.181 1.181 13 C 0.286 3.714 14 O -0.470 6.470 15 C 0.025 3.975 16 H 0.135 0.865 17 C -0.211 4.211 18 N -0.862 5.862 19 S 2.773 3.227 20 O -0.937 6.937 21 O -0.956 6.956 22 C -0.759 4.759 23 C -0.029 4.029 24 C -0.156 4.156 25 C -0.086 4.086 26 C -0.165 4.165 27 C -0.040 4.040 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.259 0.741 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.100 -5.617 -4.387 9.381 hybrid contribution 0.106 0.124 -0.227 0.279 sum 6.206 -5.493 -4.614 9.485 Atomic orbital electron populations 1.21689 0.96275 1.00951 1.01455 1.21805 0.94912 0.98395 1.02079 1.21551 0.82551 0.95765 1.01484 1.43591 1.04061 1.65322 1.05805 1.18937 1.19431 1.16907 0.93247 0.88148 1.25582 0.94872 0.97031 0.95700 1.69731 1.12207 1.33909 1.32294 0.87674 0.81826 0.84377 0.81908 1.20497 1.15464 1.18093 1.20288 0.88859 0.78068 0.84224 1.90512 1.69944 1.54953 1.31636 1.20758 0.94705 1.00028 0.81977 0.86539 1.22052 1.00799 0.94266 1.04028 1.55305 1.37274 1.79018 1.14560 1.02167 0.72888 0.74216 0.73473 1.93685 1.86016 1.45854 1.68189 1.93555 1.85210 1.86383 1.30445 1.30994 1.21628 1.18650 1.04631 1.21095 0.93540 0.95601 0.92695 1.21331 0.97289 0.96437 1.00509 1.21465 0.97230 0.96126 0.93740 1.21235 0.98921 1.00378 0.95957 1.20893 0.92982 0.91130 0.99013 0.92895 0.93010 0.93250 0.92240 0.91840 0.90870 0.92094 0.91089 0.92538 0.88699 0.92666 0.74062 0.83840 0.84829 0.85430 0.85293 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.13 -2.29 6.23 -26.73 -0.17 -2.46 16 3 C 0.11 2.20 5.38 -4.04 -0.02 2.18 16 4 N -0.47 -10.76 1.92 -114.81 -0.22 -10.98 16 5 C -0.36 -8.72 8.12 -14.93 -0.12 -8.84 16 6 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.08 1.94 3.94 -17.47 -0.07 1.87 16 8 N -0.85 -21.44 13.96 55.50 0.77 -20.66 16 9 Si 0.82 20.48 23.94 -169.99 -4.07 16.41 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.23 -5.79 6.05 56.52 0.34 -5.45 16 12 H -0.26 -6.73 5.73 56.52 0.32 -6.40 16 13 C 0.50 11.68 4.53 -10.99 -0.05 11.63 16 14 O -0.59 -14.47 15.62 5.55 0.09 -14.39 16 15 C 0.13 2.85 1.96 -69.08 -0.14 2.72 16 16 H 0.12 2.66 2.82 -51.93 -0.15 2.51 16 17 C -0.15 -2.79 9.39 37.16 0.35 -2.44 16 18 N -1.10 -21.04 5.36 -5.88 -0.03 -21.08 16 19 S 2.68 49.64 5.72 -107.50 -0.61 49.03 16 20 O -0.95 -20.40 14.05 -57.17 -0.80 -21.21 16 21 O -0.97 -18.48 17.28 -57.17 -0.99 -19.47 16 22 C -0.67 -10.56 4.93 -39.58 -0.20 -10.75 16 23 C -0.01 -0.16 8.73 -39.58 -0.35 -0.50 16 24 C -0.14 -1.73 10.05 -39.59 -0.40 -2.13 16 25 C -0.07 -0.73 10.05 -39.59 -0.40 -1.12 16 26 C -0.15 -1.62 10.05 -39.59 -0.40 -2.02 16 27 C -0.02 -0.28 9.52 -39.58 -0.38 -0.66 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.40 8.00 -51.93 -0.42 0.98 16 34 H 0.06 1.26 7.50 -51.93 -0.39 0.87 16 35 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.06 0.92 6.19 -51.93 -0.32 0.60 16 37 H 0.09 1.86 7.15 -51.93 -0.37 1.49 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.42 7.57 8.09 -34.47 -0.28 7.29 16 40 H 0.14 2.38 7.61 -52.48 -0.40 1.98 16 41 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.14 1.63 7.62 -52.49 -0.40 1.23 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -30.75 363.89 -8.56 -39.31 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.22 Total: 11.71 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.96 Total: -14.15 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.52 Total: -52.72 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -1.70 Total: -55.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.07 Total: 16.41 kcal Atomic # 16 Polarization: 49.64 SS G_CDS: -0.61 Total: 49.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.75 -8.56 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352420901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.575 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds