Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 N 1.46498 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99673 * 265.28578 * 4 3 2 6 6 H 1.08001 * 119.99945 * 53.54171 * 5 4 3 7 7 C 1.38951 * 119.99957 * 233.53472 * 5 4 3 8 8 N 1.31410 * 120.00031 * 200.52081 * 7 5 4 9 9 Si 1.86802 * 120.00026 * 20.51873 * 7 5 4 10 10 H 1.48502 * 109.47019 * 93.66420 * 9 7 5 11 11 H 1.48500 * 109.47102 * 213.66319 * 9 7 5 12 12 H 1.48498 * 109.47068 * 333.66392 * 9 7 5 13 13 C 1.34771 * 120.00482 * 85.28815 * 4 3 2 14 14 O 1.21291 * 119.99797 * 5.11736 * 13 4 3 15 15 C 1.50697 * 120.00376 * 185.11758 * 13 4 3 16 16 H 1.08998 * 109.47191 * 315.29779 * 15 13 4 17 17 C 1.53003 * 109.46895 * 75.29621 * 15 13 4 18 18 N 1.46500 * 109.47487 * 195.29236 * 15 13 4 19 19 S 1.65598 * 120.00252 * 144.99713 * 18 15 13 20 20 O 1.42091 * 106.40398 * 311.46871 * 19 18 15 21 21 O 1.42106 * 106.40408 * 178.54158 * 19 18 15 22 22 C 1.76199 * 107.21452 * 65.00661 * 19 18 15 23 23 C 1.38237 * 120.00204 * 269.72607 * 22 19 18 24 24 C 1.38234 * 120.00331 * 179.76804 * 23 22 19 25 25 C 1.38230 * 119.99892 * 0.50572 * 24 23 22 26 26 C 1.38231 * 119.99818 * 359.74576 * 25 24 23 27 27 C 1.38233 * 120.00434 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46942 * 299.99680 * 1 2 3 29 29 H 1.08992 * 109.47293 * 60.00102 * 1 2 3 30 30 H 1.08999 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47001 * 239.99836 * 2 1 3 32 32 H 1.09001 * 109.47091 * 119.99900 * 2 1 3 33 33 H 1.08998 * 109.47359 * 60.00056 * 3 2 1 34 34 H 1.09001 * 109.47099 * 299.99895 * 3 2 1 35 35 H 0.96999 * 119.99921 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47291 * 174.54693 * 17 15 13 37 37 H 1.08996 * 109.46914 * 294.54684 * 17 15 13 38 38 H 1.08999 * 109.47457 * 54.54572 * 17 15 13 39 39 H 0.97008 * 119.99908 * 325.01087 * 18 15 13 40 40 H 1.08006 * 119.99808 * 359.97438 * 23 22 19 41 41 H 1.08006 * 119.99682 * 180.23290 * 24 23 22 42 42 H 1.07998 * 120.00060 * 179.72995 * 25 24 23 43 43 H 1.08001 * 119.99903 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00204 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5399 1.1825 6 1 3.9799 0.8513 1.9873 7 6 5.1578 2.5244 1.3460 8 7 6.0803 2.3919 2.2724 9 14 5.1461 4.0363 0.2489 10 1 4.3902 5.1264 0.9163 11 1 6.5417 4.4802 0.0030 12 1 4.4972 3.7040 -1.0448 13 6 4.1785 1.3468 -1.1641 14 8 3.5752 1.3542 -2.2163 15 6 5.6809 1.2305 -1.1577 16 1 6.0980 1.9501 -0.4532 17 6 6.0811 -0.1853 -0.7377 18 7 6.1978 1.5059 -2.5006 19 16 7.6466 2.2860 -2.6863 20 8 7.6015 3.4239 -1.8365 21 8 7.8809 2.3696 -4.0854 22 6 8.8959 1.2279 -2.0351 23 6 9.2562 1.3216 -0.7038 24 6 10.2329 0.4881 -0.1917 25 6 10.8568 -0.4319 -1.0133 26 6 10.5002 -0.5221 -2.3458 27 6 9.5202 0.3081 -2.8568 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 6.7555 3.0790 2.3863 36 1 7.1615 -0.2988 -0.8261 37 1 5.7813 -0.3559 0.2962 38 1 5.5856 -0.9097 -1.3840 39 1 5.6912 1.2314 -3.2810 40 1 8.7722 2.0437 -0.0629 41 1 10.5117 0.5589 0.8494 42 1 11.6230 -1.0801 -0.6143 43 1 10.9879 -1.2406 -2.9879 44 1 9.2419 0.2379 -3.8980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352420901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -94.219041 kcal Electronic energy + Delta-G solvation = -29402.273136 eV Core-core repulsion = 25446.311915 eV Total energy + Delta-G solvation = -3955.961221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15970 -40.06491 -38.52561 -37.25896 -37.14078 -36.50234 -34.86140 -33.35233 -32.31473 -32.00612 -30.84677 -27.81583 -26.46939 -24.66869 -24.21674 -23.71514 -22.47052 -21.32591 -20.78730 -19.82849 -19.17761 -18.30414 -17.94232 -17.14074 -17.00615 -16.94076 -16.45255 -15.79288 -15.76118 -15.62456 -15.47277 -15.33324 -14.86922 -14.62360 -14.48321 -14.26465 -13.98421 -13.87513 -13.60585 -13.40352 -13.31598 -13.28008 -13.04279 -12.94849 -12.85092 -12.76201 -12.60897 -12.27817 -12.21369 -12.13634 -11.98221 -11.77285 -11.51616 -11.16114 -10.74582 -10.49551 -10.32401 -10.02206 -9.48043 -8.58469 -6.31416 -0.81347 -0.20873 0.32153 1.14324 1.35059 1.50723 1.73307 1.82379 2.13820 2.42646 2.62119 2.71140 2.83589 3.18729 3.73595 3.83709 3.94531 4.09906 4.13002 4.15312 4.19755 4.27970 4.33728 4.40473 4.45881 4.52268 4.69745 4.70494 4.79959 4.82632 4.96874 5.02673 5.05420 5.11166 5.19115 5.29024 5.30080 5.32621 5.39344 5.45745 5.67754 5.82375 5.88399 5.91315 6.41642 6.93713 7.27080 7.73575 8.52030 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.004810 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.148007 B = 5819.644608 C = 5982.512340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.102 3.898 4 N -0.475 5.475 5 C -0.345 4.345 6 H 0.094 0.906 7 C 0.070 3.930 8 N -0.859 5.859 9 Si 0.840 3.160 10 H -0.281 1.281 11 H -0.239 1.239 12 H -0.278 1.278 13 C 0.488 3.512 14 O -0.605 6.605 15 C 0.134 3.866 16 H 0.100 0.900 17 C -0.142 4.142 18 N -1.102 6.102 19 S 2.685 3.315 20 O -0.988 6.988 21 O -0.979 6.979 22 C -0.677 4.677 23 C -0.036 4.036 24 C -0.140 4.140 25 C -0.053 4.053 26 C -0.136 4.136 27 C -0.032 4.032 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.283 0.717 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.426 0.574 40 H 0.119 0.881 41 H 0.152 0.848 42 H 0.170 0.830 43 H 0.169 0.831 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -9.110 -3.675 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.021 4.021 4 N -0.196 5.196 5 C -0.473 4.473 6 H 0.112 0.888 7 C -0.138 4.138 8 N -0.494 5.494 9 Si 0.665 3.335 10 H -0.208 1.208 11 H -0.162 1.162 12 H -0.203 1.203 13 C 0.276 3.724 14 O -0.490 6.490 15 C 0.024 3.976 16 H 0.118 0.882 17 C -0.201 4.201 18 N -0.863 5.863 19 S 2.779 3.221 20 O -0.978 6.978 21 O -0.969 6.969 22 C -0.769 4.769 23 C -0.056 4.056 24 C -0.159 4.159 25 C -0.071 4.071 26 C -0.155 4.155 27 C -0.051 4.051 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.263 0.737 40 H 0.137 0.863 41 H 0.170 0.830 42 H 0.188 0.812 43 H 0.186 0.814 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.348 -8.108 -4.275 11.748 hybrid contribution -0.211 0.848 -0.289 0.921 sum 7.137 -7.260 -4.564 11.157 Atomic orbital electron populations 1.21646 0.93358 1.02537 1.02142 1.21703 0.97374 0.95853 1.01286 1.21762 0.80894 0.97975 1.01434 1.43758 1.05354 1.65105 1.05338 1.18804 1.19228 1.16090 0.93171 0.88844 1.25637 0.95217 0.97233 0.95671 1.69708 1.12628 1.34389 1.32674 0.87420 0.80977 0.84431 0.80663 1.20764 1.16217 1.20316 1.20757 0.89975 0.77593 0.84061 1.90484 1.70644 1.55789 1.32101 1.20687 0.93088 1.01208 0.82614 0.88248 1.21976 1.02238 0.92695 1.03208 1.55241 1.38037 1.79046 1.13956 1.01714 0.73185 0.74224 0.72942 1.93623 1.86662 1.48590 1.68895 1.93524 1.85392 1.86840 1.31151 1.30337 1.21556 1.19778 1.05227 1.21041 0.95358 0.96714 0.92475 1.21618 0.96391 0.96060 1.01848 1.21976 0.96751 0.95045 0.93281 1.21710 0.97417 0.99707 0.96654 1.21190 0.93585 0.90973 0.99356 0.91712 0.92854 0.91223 0.93686 0.91885 0.89984 0.93019 0.90631 0.90513 0.90060 0.91339 0.73703 0.86265 0.83031 0.81213 0.81388 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.12 -4.13 6.23 30.60 0.19 -3.94 16 3 C 0.10 4.08 5.38 86.38 0.46 4.55 16 4 N -0.47 -22.08 1.92 -635.55 -1.22 -23.30 16 5 C -0.35 -16.90 8.12 84.04 0.68 -16.22 16 6 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 7 C 0.07 3.58 3.94 84.93 0.33 3.91 16 8 N -0.86 -43.67 13.96 21.66 0.30 -43.37 16 9 Si 0.84 43.03 23.94 68.60 1.64 44.67 16 10 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.24 -12.42 6.05 99.48 0.60 -11.82 16 12 H -0.28 -15.10 5.73 99.48 0.57 -14.53 16 13 C 0.49 23.24 4.53 87.66 0.40 23.63 16 14 O -0.60 -30.39 15.62 -3.06 -0.05 -30.44 16 15 C 0.13 5.76 1.96 44.25 0.09 5.85 16 16 H 0.10 4.67 2.82 -2.39 -0.01 4.66 16 17 C -0.14 -5.14 9.39 71.98 0.68 -4.47 16 18 N -1.10 -43.15 5.36 -172.52 -0.93 -44.07 16 19 S 2.68 102.16 5.72 -56.49 -0.32 101.84 16 20 O -0.99 -44.66 14.05 -128.00 -1.80 -46.46 16 21 O -0.98 -38.16 17.28 -128.00 -2.21 -40.37 16 22 C -0.68 -20.93 4.93 22.27 0.11 -20.82 16 23 C -0.04 -1.10 8.73 22.27 0.19 -0.91 16 24 C -0.14 -3.19 10.05 22.27 0.22 -2.96 16 25 C -0.05 -0.89 10.05 22.27 0.22 -0.66 16 26 C -0.14 -2.40 10.05 22.27 0.22 -2.18 16 27 C -0.03 -0.77 9.52 22.27 0.21 -0.56 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 3.10 8.00 -2.39 -0.02 3.08 16 34 H 0.05 2.15 7.50 -2.39 -0.02 2.14 16 35 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 36 H 0.08 2.43 6.19 -2.39 -0.01 2.41 16 37 H 0.08 3.16 7.15 -2.39 -0.02 3.14 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.43 15.68 8.09 -96.74 -0.78 14.90 16 40 H 0.12 4.15 7.61 -2.91 -0.02 4.13 16 41 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 42 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.15 3.20 7.62 -2.91 -0.02 3.18 16 Total: -1.00 -67.71 363.89 0.15 -67.57 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.00 Total: 31.54 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.73 Total: -17.60 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -1.84 Total: -110.75 kcal Atomic # 8 Polarization: -113.21 SS G_CDS: -4.06 Total: -117.27 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.64 Total: 44.67 kcal Atomic # 16 Polarization: 102.16 SS G_CDS: -0.32 Total: 101.84 kcal Total: -67.71 0.15 -67.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352420901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.653 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds