Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47330 * 2 1 4 4 H 1.09003 * 109.47423 * 304.99649 * 3 2 1 5 5 C 1.53006 * 109.47291 * 64.99521 * 3 2 1 6 6 C 1.50700 * 109.47013 * 184.99661 * 3 2 1 7 7 C 1.38240 * 119.99986 * 120.00228 * 6 3 2 8 8 C 1.38235 * 119.99935 * 179.97438 * 7 6 3 9 9 C 1.38228 * 119.99864 * 359.97438 * 8 7 6 10 10 S 1.76202 * 119.99678 * 180.02562 * 9 8 7 11 11 O 1.42093 * 106.40556 * 336.45965 * 10 9 8 12 12 O 1.42107 * 106.40089 * 203.53689 * 10 9 8 13 13 N 1.65608 * 107.21687 * 89.99939 * 10 9 8 14 14 C 1.46493 * 119.99916 * 64.72608 * 13 10 9 15 15 C 1.50701 * 109.47227 * 165.00221 * 14 13 10 16 16 O 1.21299 * 119.99758 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00451 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00190 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00310 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00018 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47207 * 89.99840 * 22 20 18 24 24 H 1.48498 * 109.47588 * 209.99847 * 22 20 18 25 25 H 1.48504 * 109.47085 * 330.00284 * 22 20 18 26 26 C 1.38235 * 120.00263 * 0.27221 * 9 8 7 27 27 C 1.38235 * 120.00110 * 359.51734 * 26 9 8 28 28 H 1.09002 * 109.47280 * 300.00931 * 1 2 3 29 29 H 1.09001 * 109.46737 * 60.00149 * 1 2 3 30 30 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47167 * 239.99597 * 2 1 3 32 32 H 1.09001 * 109.46737 * 119.99851 * 2 1 3 33 33 H 1.08996 * 109.47286 * 300.00268 * 5 3 2 34 34 H 1.09003 * 109.46783 * 59.99735 * 5 3 2 35 35 H 1.08999 * 109.46865 * 179.97438 * 5 3 2 36 36 H 1.08004 * 119.99518 * 359.97275 * 7 6 3 37 37 H 1.07999 * 119.99335 * 179.97438 * 8 7 6 38 38 H 0.97000 * 119.99287 * 244.99942 * 13 10 9 39 39 H 1.09002 * 109.47374 * 284.99622 * 14 13 10 40 40 H 1.08994 * 109.47678 * 44.99870 * 14 13 10 41 41 H 0.97000 * 120.00155 * 359.97438 * 17 15 14 42 42 H 0.96999 * 120.00412 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.00038 * 179.73121 * 26 9 8 44 44 H 1.07996 * 120.00342 * 180.27652 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5420 1.4442 -0.1237 7 6 4.1464 2.0734 -1.1960 8 6 5.5241 2.0755 -1.3092 9 6 6.2973 1.4487 -0.3500 10 16 8.0535 1.4519 -0.4940 11 8 8.3428 1.6447 -1.8717 12 8 8.5190 0.3335 0.2489 13 7 8.6074 2.7995 0.2932 14 6 8.4243 2.9293 1.7408 15 6 9.3141 4.0276 2.2633 16 8 10.0311 4.6413 1.5013 17 7 9.3140 4.3273 3.5772 18 6 10.1232 5.3269 4.0524 19 1 10.7610 5.8739 3.3738 20 6 10.1227 5.6362 5.4070 21 7 9.3462 4.9711 6.2326 22 14 11.2256 6.9976 6.0546 23 1 10.4940 8.2893 6.0132 24 1 11.6160 6.6946 7.4549 25 1 12.4438 7.0915 5.2104 26 6 5.6927 0.8151 0.7195 27 6 4.3152 0.8167 0.8351 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5489 2.1253 1.3969 34 1 2.0697 1.5875 2.1492 35 1 1.9990 3.1541 1.3075 36 1 3.5422 2.5634 -1.9452 37 1 5.9963 2.5667 -2.1471 38 1 9.0495 3.5047 -0.2050 39 1 7.3835 3.1722 1.9551 40 1 8.6851 1.9887 2.2259 41 1 8.7409 3.8364 4.1867 42 1 9.3456 5.1873 7.1782 43 1 6.2967 0.3217 1.4666 44 1 3.8430 0.3255 1.6730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352528333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -105.459010 kcal Electronic energy + Delta-G solvation = -26885.364961 eV Core-core repulsion = 22928.916339 eV Total energy + Delta-G solvation = -3956.448623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92391 -38.44407 -37.14002 -36.52056 -35.76050 -34.65984 -33.70890 -31.64967 -31.36321 -31.26118 -29.17047 -27.16222 -25.36440 -24.34461 -23.35358 -22.69251 -20.30836 -19.68094 -19.42478 -18.14933 -18.10578 -17.39169 -16.29391 -16.08740 -15.64042 -15.51234 -14.94291 -14.88708 -14.69990 -14.45931 -14.30453 -14.19868 -13.76496 -13.67793 -13.37417 -13.30364 -12.66391 -12.50380 -12.44129 -12.29871 -12.09995 -12.00990 -11.93302 -11.89002 -11.59231 -11.54776 -11.40805 -11.15443 -11.13733 -10.96865 -10.67683 -10.45665 -10.30912 -9.64028 -9.42213 -9.30837 -9.22476 -8.60705 -8.09875 -6.51789 -3.93317 0.39479 0.68996 1.11473 3.00916 3.11727 3.22259 3.27922 3.35464 3.72706 3.85390 4.09674 4.18450 4.28470 4.40658 4.62289 4.69568 4.73288 4.84307 4.95691 5.02435 5.08302 5.12336 5.15497 5.23136 5.26949 5.43946 5.50361 5.51081 5.59450 5.60619 5.65767 5.73793 5.77066 5.82174 5.87523 5.92247 5.92867 6.01742 6.25981 6.27139 6.63479 7.25769 7.46434 7.93507 8.46081 9.05478 9.39325 9.88056 10.65278 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.002779 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.116662 B =10073.289032 C =11788.142059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.060 4.060 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.024 4.024 7 C -0.141 4.141 8 C -0.014 4.014 9 C -0.680 4.680 10 S 2.700 3.300 11 O -0.962 6.962 12 O -0.958 6.958 13 N -1.096 6.096 14 C 0.106 3.894 15 C 0.435 3.565 16 O -0.589 6.589 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.932 3.068 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.017 4.017 27 C -0.137 4.137 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.428 0.572 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.395 0.605 42 H 0.274 0.726 43 H 0.142 0.858 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.312 -9.298 -9.959 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.078 4.078 4 H 0.100 0.900 5 C -0.205 4.205 6 C -0.024 4.024 7 C -0.160 4.160 8 C -0.033 4.033 9 C -0.766 4.766 10 S 2.789 3.211 11 O -0.952 6.952 12 O -0.948 6.948 13 N -0.861 5.861 14 C -0.024 4.024 15 C 0.219 3.781 16 O -0.474 6.474 17 N -0.188 5.188 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.759 3.241 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.036 4.036 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.267 0.733 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.229 0.771 42 H 0.084 0.916 43 H 0.160 0.840 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.433 -9.621 -10.554 22.536 hybrid contribution -0.415 0.964 0.850 1.351 sum -17.848 -8.658 -9.703 22.083 Atomic orbital electron populations 1.21828 0.95444 1.01803 1.02043 1.21596 0.96047 0.95239 1.02590 1.20340 0.90387 0.97338 0.99781 0.90034 1.21915 1.01579 1.00818 0.96170 1.20222 0.95634 0.93266 0.93293 1.21178 0.94691 1.01440 0.98703 1.20919 0.93996 0.92661 0.95754 1.31033 1.27260 1.13267 1.05065 1.01662 0.73579 0.72951 0.72954 1.93576 1.83997 1.85761 1.31881 1.93582 1.78775 1.49636 1.72830 1.55090 1.74067 1.40772 1.16125 1.20945 1.00187 1.00999 0.80314 1.19602 0.87448 0.87358 0.83657 1.90512 1.45341 1.55107 1.56484 1.41809 1.38345 1.32712 1.05942 1.19734 1.19547 1.11535 0.92466 0.87683 1.25304 0.97794 0.98827 0.95808 1.69604 1.38496 1.40957 1.04654 0.85821 0.80055 0.80237 0.77967 1.20318 1.20817 1.19311 1.20986 0.95438 0.92665 0.94526 1.21111 0.93523 1.01244 0.99683 0.92270 0.92712 0.92615 0.91748 0.91476 0.91816 0.92093 0.92232 0.85230 0.84202 0.73338 0.90274 0.88689 0.77125 0.91647 0.83991 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16 2 C -0.12 -0.74 5.14 -26.73 -0.14 -0.88 16 3 C -0.06 -0.42 2.56 -91.77 -0.24 -0.66 16 4 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 5 C -0.15 -1.00 8.76 37.16 0.33 -0.68 16 6 C -0.02 -0.22 4.78 -104.62 -0.50 -0.72 16 7 C -0.14 -1.38 9.67 -39.58 -0.38 -1.76 16 8 C -0.01 -0.16 9.52 -39.59 -0.38 -0.54 16 9 C -0.68 -8.47 5.94 -39.59 -0.24 -8.70 16 10 S 2.70 39.38 5.74 -107.50 -0.62 38.76 16 11 O -0.96 -15.84 17.28 -57.17 -0.99 -16.82 16 12 O -0.96 -16.07 16.76 -57.17 -0.96 -17.03 16 13 N -1.10 -17.31 5.93 -11.66 -0.07 -17.38 16 14 C 0.11 1.77 6.70 -5.20 -0.03 1.74 16 15 C 0.44 9.82 7.85 -10.99 -0.09 9.73 16 16 O -0.59 -15.22 15.31 5.54 0.08 -15.14 16 17 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.52 13.05 55.50 0.72 -22.80 16 22 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 26 C -0.02 -0.19 9.52 -39.58 -0.38 -0.57 16 27 C -0.14 -1.34 8.76 -39.58 -0.35 -1.69 16 28 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.42 7.57 -51.93 -0.39 0.03 16 33 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 34 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.13 0.95 7.95 -52.48 -0.42 0.54 16 37 H 0.14 1.43 7.62 -52.49 -0.40 1.03 16 38 H 0.43 7.04 7.71 -34.47 -0.27 6.77 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.45 7.76 -51.93 -0.40 1.05 16 41 H 0.40 9.02 7.90 -40.82 -0.32 8.70 16 42 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.14 1.47 7.61 -52.49 -0.40 1.07 16 44 H 0.13 1.01 7.16 -52.49 -0.38 0.64 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -33.53 380.13 -9.52 -43.05 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.07 Total: 12.62 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.27 Total: -12.94 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.60 Total: -53.64 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.86 Total: -48.99 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 39.38 SS G_CDS: -0.62 Total: 38.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.53 -9.52 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352528333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.413 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds