Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47330 * 2 1 4 4 H 1.09003 * 109.47423 * 304.99649 * 3 2 1 5 5 C 1.53006 * 109.47291 * 64.99521 * 3 2 1 6 6 C 1.50700 * 109.47013 * 184.99661 * 3 2 1 7 7 C 1.38240 * 119.99986 * 120.00228 * 6 3 2 8 8 C 1.38235 * 119.99935 * 179.97438 * 7 6 3 9 9 C 1.38228 * 119.99864 * 359.97438 * 8 7 6 10 10 S 1.76202 * 119.99678 * 180.02562 * 9 8 7 11 11 O 1.42093 * 106.40556 * 336.45965 * 10 9 8 12 12 O 1.42107 * 106.40089 * 203.53689 * 10 9 8 13 13 N 1.65608 * 107.21687 * 89.99939 * 10 9 8 14 14 C 1.46493 * 119.99916 * 64.72608 * 13 10 9 15 15 C 1.50701 * 109.47227 * 165.00221 * 14 13 10 16 16 O 1.21299 * 119.99758 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00451 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00190 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00310 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00018 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47207 * 89.99840 * 22 20 18 24 24 H 1.48498 * 109.47588 * 209.99847 * 22 20 18 25 25 H 1.48504 * 109.47085 * 330.00284 * 22 20 18 26 26 C 1.38235 * 120.00263 * 0.27221 * 9 8 7 27 27 C 1.38235 * 120.00110 * 359.51734 * 26 9 8 28 28 H 1.09002 * 109.47280 * 300.00931 * 1 2 3 29 29 H 1.09001 * 109.46737 * 60.00149 * 1 2 3 30 30 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47167 * 239.99597 * 2 1 3 32 32 H 1.09001 * 109.46737 * 119.99851 * 2 1 3 33 33 H 1.08996 * 109.47286 * 300.00268 * 5 3 2 34 34 H 1.09003 * 109.46783 * 59.99735 * 5 3 2 35 35 H 1.08999 * 109.46865 * 179.97438 * 5 3 2 36 36 H 1.08004 * 119.99518 * 359.97275 * 7 6 3 37 37 H 1.07999 * 119.99335 * 179.97438 * 8 7 6 38 38 H 0.97000 * 119.99287 * 244.99942 * 13 10 9 39 39 H 1.09002 * 109.47374 * 284.99622 * 14 13 10 40 40 H 1.08994 * 109.47678 * 44.99870 * 14 13 10 41 41 H 0.97000 * 120.00155 * 359.97438 * 17 15 14 42 42 H 0.96999 * 120.00412 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.00038 * 179.73121 * 26 9 8 44 44 H 1.07996 * 120.00342 * 180.27652 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5420 1.4442 -0.1237 7 6 4.1464 2.0734 -1.1960 8 6 5.5241 2.0755 -1.3092 9 6 6.2973 1.4487 -0.3500 10 16 8.0535 1.4519 -0.4940 11 8 8.3428 1.6447 -1.8717 12 8 8.5190 0.3335 0.2489 13 7 8.6074 2.7995 0.2932 14 6 8.4243 2.9293 1.7408 15 6 9.3141 4.0276 2.2633 16 8 10.0311 4.6413 1.5013 17 7 9.3140 4.3273 3.5772 18 6 10.1232 5.3269 4.0524 19 1 10.7610 5.8739 3.3738 20 6 10.1227 5.6362 5.4070 21 7 9.3462 4.9711 6.2326 22 14 11.2256 6.9976 6.0546 23 1 10.4940 8.2893 6.0132 24 1 11.6160 6.6946 7.4549 25 1 12.4438 7.0915 5.2104 26 6 5.6927 0.8151 0.7195 27 6 4.3152 0.8167 0.8351 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5489 2.1253 1.3969 34 1 2.0697 1.5875 2.1492 35 1 1.9990 3.1541 1.3075 36 1 3.5422 2.5634 -1.9452 37 1 5.9963 2.5667 -2.1471 38 1 9.0495 3.5047 -0.2050 39 1 7.3835 3.1722 1.9551 40 1 8.6851 1.9887 2.2259 41 1 8.7409 3.8364 4.1867 42 1 9.3456 5.1873 7.1782 43 1 6.2967 0.3217 1.4666 44 1 3.8430 0.3255 1.6730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352528333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -129.137625 kcal Electronic energy + Delta-G solvation = -26886.391743 eV Core-core repulsion = 22928.916339 eV Total energy + Delta-G solvation = -3957.475404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.67049 -40.26243 -38.39891 -37.15875 -36.99316 -36.33465 -35.38371 -33.32652 -32.31919 -32.04147 -29.75280 -28.77261 -26.16940 -25.94972 -24.09529 -23.42388 -21.42730 -20.97196 -20.50210 -20.05934 -19.21122 -18.68770 -17.42785 -17.28167 -16.97561 -16.52885 -16.38138 -16.06967 -15.89431 -15.61502 -15.43120 -15.28578 -14.84286 -14.52000 -14.19548 -14.10825 -14.01734 -13.87448 -13.59044 -13.29150 -13.25314 -13.20895 -13.13047 -12.92468 -12.91331 -12.62144 -12.43286 -12.26314 -12.19835 -12.12197 -11.67383 -11.60346 -11.55026 -11.36194 -10.72085 -10.43593 -10.12148 -10.06098 -10.02931 -8.49123 -5.98210 -0.71772 -0.21737 0.31771 1.37393 1.43603 1.55568 1.89115 1.95132 2.29710 2.45193 2.74266 3.06579 3.18150 3.31325 3.58166 3.71226 3.93938 3.98131 4.06149 4.14041 4.34433 4.36991 4.41226 4.42496 4.43597 4.58826 4.66642 4.73424 4.74286 4.78273 4.95488 5.01578 5.08825 5.10577 5.15882 5.20342 5.25555 5.34719 5.40557 5.52825 5.58491 5.86005 5.88135 5.99881 6.53065 7.07597 7.48195 8.01062 8.67727 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.002779 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.116662 B =10073.289032 C =11788.142059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.057 4.057 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.021 4.021 7 C -0.144 4.144 8 C -0.028 4.028 9 C -0.686 4.686 10 S 2.716 3.284 11 O -0.984 6.984 12 O -0.983 6.983 13 N -1.102 6.102 14 C 0.114 3.886 15 C 0.434 3.566 16 O -0.626 6.626 17 N -0.561 5.561 18 C -0.337 4.337 19 H 0.082 0.918 20 C -0.009 4.009 21 N -0.914 5.914 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.030 4.030 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.424 0.576 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.401 0.599 42 H 0.280 0.720 43 H 0.149 0.851 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.502 -9.531 -9.524 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.075 4.075 4 H 0.110 0.890 5 C -0.205 4.205 6 C -0.021 4.021 7 C -0.162 4.162 8 C -0.047 4.047 9 C -0.776 4.776 10 S 2.809 3.191 11 O -0.975 6.975 12 O -0.973 6.973 13 N -0.865 5.865 14 C -0.015 4.015 15 C 0.220 3.780 16 O -0.513 6.513 17 N -0.198 5.198 18 C -0.466 4.466 19 H 0.100 0.900 20 C -0.209 4.209 21 N -0.554 5.554 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.049 4.049 27 C -0.157 4.157 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.262 0.738 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.166 0.834 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.602 -9.874 -10.112 24.166 hybrid contribution 0.146 0.991 0.658 1.198 sum -19.456 -8.884 -9.454 23.385 Atomic orbital electron populations 1.21818 0.94588 1.02142 1.02425 1.21584 0.96765 0.94594 1.02406 1.20383 0.88729 0.98003 1.00395 0.89011 1.21922 1.02454 1.00191 0.95908 1.20573 0.96977 0.91952 0.92599 1.21498 0.94180 1.01170 0.99390 1.21130 0.94929 0.92882 0.95800 1.30545 1.25013 1.15428 1.06624 1.00894 0.74272 0.71923 0.71968 1.93538 1.85039 1.85884 1.33015 1.93541 1.80143 1.50497 1.73162 1.55117 1.74847 1.40795 1.15693 1.20953 1.00548 0.99364 0.80684 1.20541 0.87009 0.87632 0.82834 1.90486 1.46895 1.56669 1.57283 1.41847 1.38511 1.32678 1.06759 1.19690 1.20879 1.13100 0.92956 0.90015 1.26040 0.98778 1.00635 0.95484 1.69654 1.39023 1.41707 1.05046 0.84930 0.78093 0.77786 0.77544 1.19513 1.19566 1.19874 1.21189 0.96438 0.92860 0.94452 1.21390 0.92921 1.01007 1.00429 0.91840 0.92380 0.92357 0.92254 0.91403 0.90529 0.92125 0.93069 0.82805 0.83723 0.73826 0.86853 0.86894 0.76448 0.91088 0.83354 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 71.98 0.70 -0.54 16 2 C -0.12 -1.17 5.14 30.59 0.16 -1.02 16 3 C -0.06 -0.64 2.56 -11.54 -0.03 -0.67 16 4 H 0.09 0.87 7.88 -2.39 -0.02 0.86 16 5 C -0.15 -1.61 8.76 71.98 0.63 -0.98 16 6 C -0.02 -0.33 4.78 -19.86 -0.09 -0.43 16 7 C -0.14 -2.48 9.67 22.27 0.22 -2.26 16 8 C -0.03 -0.60 9.52 22.27 0.21 -0.39 16 9 C -0.69 -16.40 5.94 22.27 0.13 -16.27 16 10 S 2.72 78.92 5.74 -56.49 -0.32 78.59 16 11 O -0.98 -32.71 17.28 -128.00 -2.21 -34.93 16 12 O -0.98 -32.85 16.76 -128.00 -2.14 -35.00 16 13 N -1.10 -34.72 5.93 -190.80 -1.13 -35.86 16 14 C 0.11 3.74 6.70 85.63 0.57 4.32 16 15 C 0.43 19.75 7.85 87.66 0.69 20.44 16 16 O -0.63 -33.15 15.31 -3.09 -0.05 -33.20 16 17 N -0.56 -27.55 5.29 -306.98 -1.62 -29.17 16 18 C -0.34 -18.47 9.68 84.04 0.81 -17.66 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 21 N -0.91 -47.47 13.05 21.66 0.28 -47.19 16 22 Si 0.99 41.66 29.55 68.60 2.03 43.69 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 C -0.03 -0.64 9.52 22.27 0.21 -0.42 16 27 C -0.14 -2.41 8.76 22.27 0.20 -2.21 16 28 H 0.06 0.46 6.56 -2.39 -0.02 0.45 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.68 7.57 -2.39 -0.02 0.66 16 33 H 0.08 0.65 6.56 -2.39 -0.02 0.63 16 34 H 0.06 0.67 7.39 -2.39 -0.02 0.65 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.15 1.83 7.95 -2.91 -0.02 1.80 16 37 H 0.15 2.86 7.62 -2.91 -0.02 2.83 16 38 H 0.42 14.23 7.71 -96.75 -0.75 13.49 16 39 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.11 3.32 7.76 -2.39 -0.02 3.30 16 41 H 0.40 18.35 7.90 -92.71 -0.73 17.61 16 42 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 43 H 0.15 2.86 7.61 -2.91 -0.02 2.84 16 44 H 0.15 1.93 7.16 -2.91 -0.02 1.91 16 Total: -1.00 -71.96 380.13 -0.74 -72.70 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.44 Total: 38.41 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.87 Total: -18.06 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -2.47 Total: -112.22 kcal Atomic # 8 Polarization: -98.72 SS G_CDS: -4.40 Total: -103.12 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 78.92 SS G_CDS: -0.32 Total: 78.59 kcal Total: -71.96 -0.74 -72.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352528333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.434 kcal (2) G-P(sol) polarization free energy of solvation -71.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds