Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.53001 * 109.47064 * 240.00713 * 2 1 3 5 5 S 1.81399 * 109.46539 * 304.99759 * 4 2 1 6 6 C 1.81403 * 101.91899 * 180.02562 * 5 4 2 7 7 O 1.42102 * 108.57888 * 294.48402 * 5 4 2 8 8 O 1.42101 * 108.58290 * 65.51416 * 5 4 2 9 9 N 1.46492 * 109.47493 * 120.00256 * 2 1 3 10 10 C 1.34779 * 120.00312 * 299.99762 * 9 2 1 11 11 O 1.21587 * 119.99710 * 0.02562 * 10 9 2 12 12 N 1.34772 * 120.00398 * 179.97438 * 10 9 2 13 13 C 1.39240 * 119.99947 * 184.29448 * 12 10 9 14 14 C 1.39483 * 119.83550 * 324.70506 * 13 12 10 15 15 C 1.36372 * 120.17046 * 180.26046 * 14 13 12 16 16 C 1.40875 * 119.82663 * 359.49473 * 15 14 13 17 17 C 1.41157 * 120.16349 * 180.23454 * 16 15 14 18 18 H 1.08002 * 119.99626 * 215.04017 * 17 16 15 19 19 C 1.39889 * 119.99830 * 35.03703 * 17 16 15 20 20 N 1.30883 * 120.00349 * 355.54935 * 19 17 16 21 21 Si 1.86802 * 119.99773 * 175.54620 * 19 17 16 22 22 H 1.48494 * 109.47518 * 60.00042 * 21 19 17 23 23 H 1.48500 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46969 * 299.99981 * 21 19 17 25 25 C 1.40869 * 119.66945 * 0.52680 * 16 15 14 26 26 C 1.36369 * 119.83139 * 359.72735 * 25 16 15 27 27 H 1.09009 * 109.46771 * 299.99730 * 1 2 3 28 28 H 1.08998 * 109.47197 * 59.99209 * 1 2 3 29 29 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47317 * 300.00694 * 3 2 1 32 32 H 1.09002 * 109.46950 * 60.00823 * 3 2 1 33 33 H 1.09005 * 109.47225 * 64.99254 * 4 2 1 34 34 H 1.08996 * 109.47106 * 184.99668 * 4 2 1 35 35 H 1.08996 * 109.47449 * 59.99539 * 6 5 4 36 36 H 1.09007 * 109.47122 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46936 * 299.99534 * 6 5 4 38 38 H 0.97004 * 120.00091 * 120.00226 * 9 2 1 39 39 H 0.96998 * 119.99588 * 4.29183 * 12 10 9 40 40 H 1.08001 * 119.91307 * 359.97438 * 14 13 12 41 41 H 1.07993 * 120.08387 * 179.74680 * 15 14 13 42 42 H 0.96994 * 120.00003 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.08089 * 179.70983 * 25 16 15 44 44 H 1.08001 * 119.91422 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 16 1.3167 -2.3829 -1.3258 6 6 2.0455 -3.0389 -2.8519 7 8 1.8068 -3.1409 -0.2283 8 8 -0.0867 -2.2578 -1.5110 9 7 2.0184 -0.6906 1.1960 10 6 1.6929 -0.2302 2.4202 11 8 0.9935 0.7581 2.5319 12 7 2.1418 -0.8659 3.5206 13 6 1.7334 -0.4445 4.7833 14 6 1.5274 0.9130 5.0290 15 6 1.1325 1.3337 6.2646 16 6 0.9223 0.3922 7.2912 17 6 0.5087 0.8194 8.5715 18 1 0.8621 0.3047 9.4527 19 6 -0.3589 1.9094 8.6987 20 7 -0.7182 2.5872 7.6382 21 14 -1.0049 2.3974 10.3821 22 1 0.1352 2.7410 11.2693 23 1 -1.8997 3.5748 10.2467 24 1 -1.7643 1.2639 10.9686 25 6 1.1328 -0.9770 7.0356 26 6 1.5327 -1.3820 5.7964 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.7515 -0.1581 -2.1371 34 1 3.1263 -0.7993 -1.2057 35 1 3.1316 -3.0490 -2.7608 36 1 1.6859 -4.0543 -3.0191 37 1 1.7572 -2.4079 -3.6927 38 1 2.5761 -1.4793 1.1070 39 1 2.7494 -1.6169 3.4329 40 1 1.6856 1.6332 4.2398 41 1 0.9775 2.3854 6.4544 42 1 -1.3200 3.3427 7.7264 43 1 0.9781 -1.7040 7.8192 44 1 1.6949 -2.4314 5.5991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354024586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -64.440817 kcal Electronic energy + Delta-G solvation = -27761.663432 eV Core-core repulsion = 23806.993492 eV Total energy + Delta-G solvation = -3954.669940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.24990 -37.97672 -37.36165 -36.58814 -36.18772 -34.24887 -32.98040 -31.60352 -30.22424 -29.38403 -28.61401 -28.12827 -27.27294 -24.85450 -22.10005 -21.15129 -20.26306 -19.66756 -19.26279 -17.98642 -17.22003 -17.13838 -16.79660 -16.41914 -16.07961 -15.23818 -15.14143 -14.77379 -14.29631 -13.93972 -13.81061 -13.72804 -13.59656 -13.52114 -13.11308 -12.90187 -12.60593 -12.43874 -12.34783 -12.16845 -12.02270 -11.93123 -11.70089 -11.63457 -11.44381 -11.32591 -11.21935 -11.06015 -10.85831 -10.57605 -10.40026 -9.83557 -9.78501 -9.41215 -9.03334 -8.88481 -8.64151 -7.41515 -6.76345 -6.50233 -4.23673 -0.46104 2.31846 2.75751 2.96025 3.14089 3.16216 3.17536 3.21294 3.24708 3.59789 3.76569 4.03796 4.05932 4.23946 4.30377 4.56536 4.67374 4.81500 4.85514 4.99370 5.13085 5.18154 5.63004 5.70456 5.76315 5.82661 5.92399 6.24695 6.32361 6.47024 6.48735 6.66686 6.89058 6.95998 7.14723 7.24529 7.38373 7.47527 7.75023 7.93165 8.11979 8.18661 8.39691 8.56686 8.77164 9.02765 9.03607 9.19951 10.40936 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.002454 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.422581 B =11408.324334 C =11801.738445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.214 3.786 3 C -0.157 4.157 4 C -0.619 4.619 5 S 2.418 3.582 6 C -0.662 4.662 7 O -0.932 6.932 8 O -0.927 6.927 9 N -0.758 5.758 10 C 0.701 3.299 11 O -0.568 6.568 12 N -0.667 5.667 13 C 0.027 3.973 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.098 3.902 17 C -0.465 4.465 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.810 5.810 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.203 4.203 26 C -0.116 4.116 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.399 0.601 39 H 0.392 0.608 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.277 0.723 43 H 0.096 0.904 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 -6.935 -22.147 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.126 3.874 3 C -0.216 4.216 4 C -0.748 4.748 5 S 2.599 3.401 6 C -0.811 4.811 7 O -0.929 6.929 8 O -0.924 6.924 9 N -0.418 5.418 10 C 0.402 3.598 11 O -0.444 6.444 12 N -0.313 5.313 13 C -0.066 4.066 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.096 3.904 17 C -0.496 4.496 18 H 0.092 0.908 19 C -0.146 4.146 20 N -0.437 5.437 21 Si 0.740 3.260 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.223 4.223 26 C -0.137 4.137 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.235 0.765 39 H 0.225 0.775 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.602 -6.248 -21.559 23.397 hybrid contribution 0.784 -0.287 -0.189 0.855 sum 7.385 -6.535 -21.748 23.879 Atomic orbital electron populations 1.22818 0.92819 1.04870 1.05273 1.19586 0.94759 0.93005 0.80040 1.22236 1.00847 0.94238 1.04306 1.30669 1.13653 1.23257 1.07178 1.08085 0.76782 0.77853 0.77375 1.30334 1.14194 1.13802 1.22719 1.93589 1.82076 1.68237 1.48992 1.93627 1.27044 1.85707 1.86022 1.45549 1.58309 1.33626 1.04342 1.15890 0.80401 0.83569 0.79941 1.90865 1.41877 1.26582 1.85108 1.42131 1.49386 1.35681 1.04058 1.17099 1.13356 0.93270 0.82883 1.20657 1.00504 0.93144 0.97064 1.21294 1.01977 1.00717 0.92356 1.17708 0.88622 0.90364 0.93748 1.19415 1.24972 1.11853 0.93357 0.90810 1.25868 0.95659 0.94872 0.98188 1.69788 1.28003 1.16047 1.29841 0.86280 0.79165 0.78428 0.82173 1.19156 1.20508 1.19208 1.20672 1.10239 0.95792 0.95599 1.20073 1.03482 0.96006 0.94121 0.88281 0.91050 0.90679 0.92611 0.91898 0.88873 0.83332 0.84334 0.85326 0.85165 0.85306 0.76521 0.77461 0.87290 0.85292 0.91147 0.88617 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 7.64 37.16 0.28 -2.43 16 2 C 0.21 2.44 0.75 -131.82 -0.10 2.34 16 3 C -0.16 -1.79 8.40 37.16 0.31 -1.48 16 4 C -0.62 -3.68 4.88 37.16 0.18 -3.50 16 5 S 2.42 17.95 4.82 -107.50 -0.52 17.43 16 6 C -0.66 -2.02 10.62 101.05 1.07 -0.95 16 7 O -0.93 -10.09 16.18 -57.83 -0.94 -11.03 16 8 O -0.93 -10.54 15.23 -57.83 -0.88 -11.42 16 9 N -0.76 -10.26 4.72 -52.42 -0.25 -10.51 16 10 C 0.70 12.89 7.81 -86.92 -0.68 12.21 16 11 O -0.57 -12.38 9.97 5.29 0.05 -12.33 16 12 N -0.67 -12.39 5.31 -14.10 -0.07 -12.46 16 13 C 0.03 0.61 6.31 -83.57 -0.53 0.08 16 14 C -0.09 -2.37 8.61 -39.79 -0.34 -2.71 16 15 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 16 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 17 C -0.46 -12.70 9.02 -37.86 -0.34 -13.04 16 18 H 0.07 1.92 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 20 N -0.81 -22.10 10.61 55.54 0.59 -21.51 16 21 Si 0.91 19.61 29.56 -169.99 -5.03 14.58 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.20 -5.06 9.74 -39.26 -0.38 -5.44 16 26 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 27 H 0.10 1.69 6.16 -51.92 -0.32 1.37 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.08 5.23 -51.93 -0.27 0.81 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.41 6.16 -51.93 -0.32 1.09 16 33 H 0.15 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.13 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 38 H 0.40 4.49 6.80 -40.82 -0.28 4.21 16 39 H 0.39 5.86 8.83 -40.82 -0.36 5.50 16 40 H 0.11 2.76 6.22 -52.49 -0.33 2.43 16 41 H 0.13 3.69 6.15 -52.49 -0.32 3.36 16 42 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 43 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -36.55 363.93 -9.47 -46.02 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.97 Total: 14.13 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.94 Total: -18.39 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.27 Total: -44.48 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.76 Total: -34.78 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Atomic # 16 Polarization: 17.95 SS G_CDS: -0.52 Total: 17.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.55 -9.47 -46.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354024586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.419 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds