Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.53001 * 109.47064 * 240.00713 * 2 1 3 5 5 S 1.81399 * 109.46539 * 304.99759 * 4 2 1 6 6 C 1.81403 * 101.91899 * 180.02562 * 5 4 2 7 7 O 1.42102 * 108.57888 * 294.48402 * 5 4 2 8 8 O 1.42101 * 108.58290 * 65.51416 * 5 4 2 9 9 N 1.46492 * 109.47493 * 120.00256 * 2 1 3 10 10 C 1.34779 * 120.00312 * 299.99762 * 9 2 1 11 11 O 1.21587 * 119.99710 * 0.02562 * 10 9 2 12 12 N 1.34772 * 120.00398 * 179.97438 * 10 9 2 13 13 C 1.39240 * 119.99947 * 184.29448 * 12 10 9 14 14 C 1.39483 * 119.83550 * 324.70506 * 13 12 10 15 15 C 1.36372 * 120.17046 * 180.26046 * 14 13 12 16 16 C 1.40875 * 119.82663 * 359.49473 * 15 14 13 17 17 C 1.41157 * 120.16349 * 180.23454 * 16 15 14 18 18 H 1.08002 * 119.99626 * 215.04017 * 17 16 15 19 19 C 1.39889 * 119.99830 * 35.03703 * 17 16 15 20 20 N 1.30883 * 120.00349 * 355.54935 * 19 17 16 21 21 Si 1.86802 * 119.99773 * 175.54620 * 19 17 16 22 22 H 1.48494 * 109.47518 * 60.00042 * 21 19 17 23 23 H 1.48500 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46969 * 299.99981 * 21 19 17 25 25 C 1.40869 * 119.66945 * 0.52680 * 16 15 14 26 26 C 1.36369 * 119.83139 * 359.72735 * 25 16 15 27 27 H 1.09009 * 109.46771 * 299.99730 * 1 2 3 28 28 H 1.08998 * 109.47197 * 59.99209 * 1 2 3 29 29 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47317 * 300.00694 * 3 2 1 32 32 H 1.09002 * 109.46950 * 60.00823 * 3 2 1 33 33 H 1.09005 * 109.47225 * 64.99254 * 4 2 1 34 34 H 1.08996 * 109.47106 * 184.99668 * 4 2 1 35 35 H 1.08996 * 109.47449 * 59.99539 * 6 5 4 36 36 H 1.09007 * 109.47122 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46936 * 299.99534 * 6 5 4 38 38 H 0.97004 * 120.00091 * 120.00226 * 9 2 1 39 39 H 0.96998 * 119.99588 * 4.29183 * 12 10 9 40 40 H 1.08001 * 119.91307 * 359.97438 * 14 13 12 41 41 H 1.07993 * 120.08387 * 179.74680 * 15 14 13 42 42 H 0.96994 * 120.00003 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.08089 * 179.70983 * 25 16 15 44 44 H 1.08001 * 119.91422 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 16 1.3167 -2.3829 -1.3258 6 6 2.0455 -3.0389 -2.8519 7 8 1.8068 -3.1409 -0.2283 8 8 -0.0867 -2.2578 -1.5110 9 7 2.0184 -0.6906 1.1960 10 6 1.6929 -0.2302 2.4202 11 8 0.9935 0.7581 2.5319 12 7 2.1418 -0.8659 3.5206 13 6 1.7334 -0.4445 4.7833 14 6 1.5274 0.9130 5.0290 15 6 1.1325 1.3337 6.2646 16 6 0.9223 0.3922 7.2912 17 6 0.5087 0.8194 8.5715 18 1 0.8621 0.3047 9.4527 19 6 -0.3589 1.9094 8.6987 20 7 -0.7182 2.5872 7.6382 21 14 -1.0049 2.3974 10.3821 22 1 0.1352 2.7410 11.2693 23 1 -1.8997 3.5748 10.2467 24 1 -1.7643 1.2639 10.9686 25 6 1.1328 -0.9770 7.0356 26 6 1.5327 -1.3820 5.7964 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.7515 -0.1581 -2.1371 34 1 3.1263 -0.7993 -1.2057 35 1 3.1316 -3.0490 -2.7608 36 1 1.6859 -4.0543 -3.0191 37 1 1.7572 -2.4079 -3.6927 38 1 2.5761 -1.4793 1.1070 39 1 2.7494 -1.6169 3.4329 40 1 1.6856 1.6332 4.2398 41 1 0.9775 2.3854 6.4544 42 1 -1.3200 3.3427 7.7264 43 1 0.9781 -1.7040 7.8192 44 1 1.6949 -2.4314 5.5991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354024586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -92.819597 kcal Electronic energy + Delta-G solvation = -27762.894028 eV Core-core repulsion = 23806.993492 eV Total energy + Delta-G solvation = -3955.900536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.65800 -39.59577 -38.03982 -37.89681 -36.93408 -36.00834 -34.77101 -32.91271 -31.36498 -30.60785 -30.40622 -28.78300 -28.24957 -26.75068 -23.65502 -23.04412 -21.88078 -20.92952 -19.88093 -19.35872 -19.18647 -18.27273 -17.61810 -17.17442 -16.98333 -16.96289 -16.35676 -16.09264 -15.72969 -15.63259 -14.92311 -14.67469 -14.59133 -14.34836 -14.04381 -13.93084 -13.87212 -13.71913 -13.59110 -13.27405 -13.18191 -13.09627 -13.00933 -12.93408 -12.78977 -12.64380 -12.53410 -12.27670 -12.15946 -11.94963 -11.72218 -11.67582 -11.29430 -11.13572 -10.75653 -10.45322 -10.15696 -9.41314 -8.67872 -8.46475 -6.29336 -0.94901 0.89743 1.16313 1.39183 1.49803 1.52697 1.69971 1.88474 2.21864 2.26618 2.69348 2.85549 3.08900 3.35087 3.41255 3.72471 3.78332 4.02130 4.13342 4.18365 4.34723 4.45545 4.51482 4.60779 4.70785 4.76437 4.84000 4.92303 5.01102 5.01879 5.13676 5.18937 5.30436 5.39233 5.39920 5.46138 5.54911 5.73348 5.83228 6.12103 6.17883 6.21641 6.40885 6.74430 6.99336 7.06289 7.15316 7.69458 8.46537 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.002454 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.422581 B =11408.324334 C =11801.738445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.202 3.798 3 C -0.155 4.155 4 C -0.606 4.606 5 S 2.401 3.599 6 C -0.634 4.634 7 O -0.979 6.979 8 O -0.980 6.980 9 N -0.739 5.739 10 C 0.694 3.306 11 O -0.605 6.605 12 N -0.663 5.663 13 C 0.042 3.958 14 C -0.105 4.105 15 C -0.166 4.166 16 C 0.064 3.936 17 C -0.498 4.498 18 H 0.079 0.921 19 C 0.021 3.979 20 N -0.848 5.848 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.261 1.261 25 C -0.209 4.209 26 C -0.113 4.113 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.191 0.809 34 H 0.179 0.821 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.158 0.842 38 H 0.413 0.587 39 H 0.413 0.587 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.281 0.719 43 H 0.112 0.888 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 -8.531 -24.806 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.115 3.885 3 C -0.214 4.214 4 C -0.735 4.735 5 S 2.589 3.411 6 C -0.787 4.787 7 O -0.976 6.976 8 O -0.977 6.977 9 N -0.400 5.400 10 C 0.395 3.605 11 O -0.485 6.485 12 N -0.311 5.311 13 C -0.052 4.052 14 C -0.126 4.126 15 C -0.186 4.186 16 C 0.061 3.939 17 C -0.529 4.529 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.476 5.476 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.185 1.185 25 C -0.229 4.229 26 C -0.133 4.133 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.208 0.792 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.152 0.848 37 H 0.176 0.824 38 H 0.251 0.749 39 H 0.249 0.751 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.427 -7.893 -24.238 26.848 hybrid contribution 0.301 0.143 0.367 0.496 sum 8.729 -7.750 -23.871 26.572 Atomic orbital electron populations 1.22812 0.95070 1.03858 1.04273 1.19823 0.93333 0.93977 0.81354 1.22192 1.01851 0.93899 1.03473 1.30602 1.15872 1.21589 1.05444 1.08100 0.76064 0.78283 0.78670 1.30088 1.15561 1.14012 1.19057 1.93529 1.82298 1.69388 1.52366 1.93565 1.30629 1.86448 1.87049 1.45473 1.57400 1.33733 1.03344 1.16155 0.80115 0.83071 0.81148 1.90868 1.43408 1.28324 1.85871 1.41968 1.49950 1.36358 1.02792 1.17140 1.11051 0.92318 0.84713 1.20663 1.01184 0.94574 0.96133 1.21170 1.03957 0.99872 0.93640 1.18049 0.89926 0.91677 0.94206 1.19713 1.26305 1.13281 0.93578 0.90298 1.26849 0.95378 0.94339 1.02416 1.69915 1.28793 1.16687 1.32254 0.85122 0.78697 0.78205 0.76794 1.18075 1.19807 1.18492 1.20929 1.09826 0.95064 0.97035 1.20409 1.02005 0.97910 0.93003 0.92757 0.88552 0.91719 0.90865 0.88985 0.93533 0.79156 0.80320 0.82243 0.84761 0.82366 0.74890 0.75052 0.88132 0.87705 0.90836 0.87038 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.56 7.64 71.98 0.55 -5.01 16 2 C 0.20 4.27 0.75 3.61 0.00 4.27 16 3 C -0.16 -3.29 8.40 71.98 0.60 -2.69 16 4 C -0.61 -4.59 4.88 71.98 0.35 -4.24 16 5 S 2.40 29.60 4.82 -56.49 -0.27 29.33 16 6 C -0.63 -0.59 10.62 113.37 1.20 0.61 16 7 O -0.98 -19.78 16.18 -127.37 -2.06 -21.84 16 8 O -0.98 -21.57 15.23 -127.37 -1.94 -23.51 16 9 N -0.74 -19.29 4.72 -438.01 -2.07 -21.36 16 10 C 0.69 25.88 7.81 179.06 1.40 27.27 16 11 O -0.61 -27.83 9.97 -3.99 -0.04 -27.87 16 12 N -0.66 -24.37 5.31 -316.78 -1.68 -26.05 16 13 C 0.04 1.94 6.31 38.57 0.24 2.18 16 14 C -0.11 -5.60 8.61 22.13 0.19 -5.41 16 15 C -0.17 -9.66 8.61 22.48 0.19 -9.47 16 16 C 0.06 3.65 5.55 -21.27 -0.12 3.53 16 17 C -0.50 -28.19 9.02 23.39 0.21 -27.98 16 18 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 19 C 0.02 1.15 5.42 85.23 0.46 1.61 16 20 N -0.85 -48.72 10.61 21.82 0.23 -48.48 16 21 Si 0.99 41.06 29.56 68.60 2.03 43.09 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 C -0.21 -10.48 9.74 22.48 0.22 -10.26 16 26 C -0.11 -5.04 9.90 22.13 0.22 -4.82 16 27 H 0.05 1.98 6.16 -2.38 -0.01 1.97 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.92 5.23 -2.39 -0.01 1.91 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.46 6.16 -2.39 -0.01 1.44 16 33 H 0.19 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.18 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.16 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.41 8.51 6.80 -92.71 -0.63 7.88 16 39 H 0.41 11.64 8.83 -92.71 -0.82 10.82 16 40 H 0.10 5.44 6.22 -2.91 -0.02 5.42 16 41 H 0.11 6.50 6.15 -2.91 -0.02 6.48 16 42 H 0.28 14.86 8.30 -92.71 -0.77 14.09 16 43 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 44 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -88.67 363.93 -0.47 -89.15 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.40 Total: 37.95 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 5.73 Total: -30.40 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -3.52 Total: -95.89 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -4.04 Total: -73.22 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 29.60 SS G_CDS: -0.27 Total: 29.33 kcal Total: -88.67 -0.47 -89.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354024586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.672 kcal (2) G-P(sol) polarization free energy of solvation -88.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds