Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47130 * 2 1 4 4 C 1.53004 * 109.47105 * 240.00150 * 2 1 3 5 5 N 1.46495 * 109.47339 * 120.00105 * 2 1 3 6 6 S 1.65595 * 119.99974 * 38.92058 * 5 2 1 7 7 O 1.42098 * 104.27890 * 304.31691 * 6 5 2 8 8 O 1.42102 * 104.27995 * 176.46036 * 6 5 2 9 9 C 1.81401 * 104.45007 * 60.38914 * 6 5 2 10 10 C 1.50702 * 109.47308 * 171.01523 * 9 6 5 11 11 C 1.38358 * 119.95798 * 270.29812 * 10 9 6 12 12 C 1.38304 * 120.16479 * 180.25685 * 11 10 9 13 13 C 1.38080 * 120.08690 * 359.44033 * 12 11 10 14 14 C 1.39010 * 119.91359 * 0.27885 * 13 12 11 15 15 N 1.39535 * 120.08208 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00028 * 36.38203 * 15 14 13 17 17 O 1.21748 * 120.00073 * 5.22394 * 16 15 14 18 18 C 1.46178 * 120.00108 * 185.22821 * 16 15 14 19 19 H 1.08001 * 119.99570 * 359.97438 * 18 16 15 20 20 C 1.40119 * 119.99919 * 179.97438 * 18 16 15 21 21 N 1.30636 * 120.00375 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99752 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46954 * 90.00434 * 22 20 18 24 24 H 1.48501 * 109.46837 * 210.00206 * 22 20 18 25 25 H 1.48491 * 109.47218 * 330.00430 * 22 20 18 26 26 C 1.38044 * 119.95738 * 89.99542 * 10 9 6 27 27 H 1.09000 * 109.46971 * 299.99618 * 1 2 3 28 28 H 1.09000 * 109.47566 * 59.99829 * 1 2 3 29 29 H 1.09000 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46877 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47036 * 300.00496 * 3 2 1 32 32 H 1.09000 * 109.46881 * 60.00327 * 3 2 1 33 33 H 1.08995 * 109.46845 * 307.37441 * 4 2 1 34 34 H 1.09008 * 109.46831 * 67.36867 * 4 2 1 35 35 H 1.08994 * 109.47273 * 187.36600 * 4 2 1 36 36 H 0.97005 * 120.00027 * 218.91817 * 5 2 1 37 37 H 1.08993 * 109.47299 * 51.01543 * 9 6 5 38 38 H 1.09003 * 109.47096 * 291.01151 * 9 6 5 39 39 H 1.07992 * 119.91591 * 359.97438 * 11 10 9 40 40 H 1.08000 * 119.95438 * 179.72443 * 12 11 10 41 41 H 1.07998 * 120.04949 * 180.25743 * 13 12 11 42 42 H 0.97006 * 119.99945 * 216.37813 * 15 14 13 43 43 H 0.97000 * 120.00392 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.04538 * 0.04982 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 16 1.2424 -2.0471 1.7437 7 8 -0.1043 -1.6316 1.9247 8 8 2.0295 -2.4808 2.8446 9 6 1.3660 -3.2251 0.3698 10 6 0.8879 -4.5798 0.8249 11 6 1.7827 -5.4780 1.3790 12 6 1.3496 -6.7244 1.7933 13 6 0.0195 -7.0727 1.6659 14 6 -0.8835 -6.1709 1.1150 15 7 -2.2283 -6.5194 0.9840 16 6 -2.8248 -7.2713 1.9301 17 8 -2.2192 -7.5668 2.9442 18 6 -4.1987 -7.7323 1.7387 19 1 -4.7359 -7.4698 0.8393 20 6 -4.8186 -8.5145 2.7222 21 7 -4.1689 -8.8315 3.8103 22 14 -6.5746 -9.1029 2.4779 23 1 -6.5645 -10.4190 1.7902 24 1 -7.2390 -9.2399 3.7989 25 1 -7.3162 -8.1178 1.6505 26 6 -0.4434 -4.9208 0.6942 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.5729 -1.7037 -1.3177 34 1 1.7882 -0.1369 -2.1344 35 1 3.1219 -0.8368 -1.1859 36 1 2.7963 -0.3533 1.6673 37 1 2.4038 -3.2965 0.0446 38 1 0.7480 -2.8817 -0.4599 39 1 2.8227 -5.2067 1.4841 40 1 2.0518 -7.4245 2.2213 41 1 -0.3188 -8.0446 1.9934 42 1 -2.7339 -6.2203 0.2120 43 1 -4.5979 -9.3734 4.4909 44 1 -1.1420 -4.2177 0.2654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355638389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -86.161592 kcal Electronic energy + Delta-G solvation = -27663.982379 eV Core-core repulsion = 23708.370555 eV Total energy + Delta-G solvation = -3955.611824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.38066 -38.42733 -37.18971 -36.91626 -35.87556 -33.79091 -32.51220 -32.32655 -31.18064 -29.25073 -28.13420 -27.62512 -26.84187 -26.19564 -22.14701 -21.87148 -20.85075 -19.68794 -19.11745 -17.74225 -17.60581 -16.77107 -16.38097 -16.07241 -15.58175 -15.48604 -15.21280 -14.71284 -14.55193 -14.26609 -14.04102 -13.73911 -13.35384 -13.26890 -12.92210 -12.65377 -12.60073 -12.59135 -12.39718 -12.20263 -12.13752 -11.91275 -11.77152 -11.74643 -11.55870 -11.42368 -11.15128 -11.11466 -10.97988 -10.84679 -10.71710 -10.62012 -10.34403 -9.85562 -9.30575 -8.90286 -8.40334 -7.79023 -7.18133 -6.35382 -4.82840 0.14266 1.79988 1.88908 2.64033 3.07327 3.14386 3.17993 3.72156 3.98102 4.09884 4.15764 4.24117 4.43150 4.50405 4.52025 4.56099 4.64077 4.80654 4.94950 5.18062 5.20754 5.31033 5.35435 5.39017 5.50182 5.53150 5.55005 5.63113 5.69699 5.80043 5.86354 5.97074 6.01651 6.14289 6.22193 6.37258 6.72242 6.76401 6.98055 6.99107 7.25871 7.30290 7.71033 8.01512 8.14740 8.84395 9.19464 10.37402 10.56035 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.002703 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.641576 B =10357.373581 C =10980.176306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.184 4.184 5 N -1.115 6.115 6 S 2.604 3.396 7 O -0.945 6.945 8 O -0.954 6.954 9 C -0.573 4.573 10 C -0.083 4.083 11 C -0.144 4.144 12 C -0.099 4.099 13 C -0.114 4.114 14 C 0.197 3.803 15 N -0.701 5.701 16 C 0.542 3.458 17 O -0.559 6.559 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.086 3.914 21 N -0.758 5.758 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.163 4.163 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.415 0.585 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.139 0.861 42 H 0.394 0.606 43 H 0.272 0.728 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.139 16.533 -12.014 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.079 3.921 3 C -0.207 4.207 4 C -0.243 4.243 5 N -0.874 5.874 6 S 2.698 3.302 7 O -0.935 6.935 8 O -0.944 6.944 9 C -0.701 4.701 10 C -0.086 4.086 11 C -0.165 4.165 12 C -0.118 4.118 13 C -0.135 4.135 14 C 0.098 3.902 15 N -0.345 5.345 16 C 0.349 3.651 17 O -0.440 6.440 18 C -0.573 4.573 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.386 5.386 22 Si 0.738 3.262 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.185 4.185 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.157 0.843 42 H 0.228 0.772 43 H 0.083 0.917 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.897 16.036 -10.318 23.020 hybrid contribution -0.508 -0.094 -0.997 1.123 sum 12.389 15.942 -11.315 23.144 Atomic orbital electron populations 1.22609 0.92761 1.04452 1.03772 1.20230 0.94518 0.93420 0.83966 1.22038 1.01435 0.94156 1.03045 1.22694 1.02384 1.01555 0.97668 1.55903 1.46418 1.44833 1.40256 1.05360 0.74722 0.74234 0.75839 1.93638 1.35894 1.79500 1.84485 1.93589 1.70620 1.81695 1.48462 1.29732 1.10712 1.10116 1.19499 1.18456 0.93929 0.93041 1.03149 1.20813 0.98918 0.94459 1.02303 1.20974 0.95647 0.96144 0.98991 1.21433 0.91753 1.00572 0.99757 1.17880 0.85858 0.91391 0.95096 1.44200 1.07400 1.56268 1.26629 1.18415 0.87747 0.77577 0.81353 1.90658 1.66277 1.58983 1.28128 1.20845 0.96950 1.33788 1.05755 0.90942 1.25754 0.99343 0.94393 0.94072 1.69982 1.36566 1.26483 1.05603 0.86267 0.81935 0.79570 0.78438 1.19589 1.20277 1.18753 1.20842 0.95123 0.95621 1.06959 0.90259 0.91091 0.91028 0.91975 0.91079 0.91650 0.91512 0.90796 0.91438 0.75066 0.84340 0.84240 0.86308 0.85902 0.84307 0.77240 0.91680 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 7.10 37.16 0.26 -1.32 16 2 C 0.17 1.21 1.16 -131.82 -0.15 1.05 16 3 C -0.15 -0.81 8.64 37.16 0.32 -0.49 16 4 C -0.18 -1.03 8.30 37.16 0.31 -0.72 16 5 N -1.12 -9.70 5.42 0.54 0.00 -9.70 16 6 S 2.60 33.96 4.99 -107.50 -0.54 33.43 16 7 O -0.95 -15.30 14.49 -57.54 -0.83 -16.13 16 8 O -0.95 -15.81 18.08 -57.54 -1.04 -16.85 16 9 C -0.57 -6.27 4.47 36.01 0.16 -6.11 16 10 C -0.08 -1.29 5.14 -104.65 -0.54 -1.83 16 11 C -0.14 -2.29 9.70 -39.51 -0.38 -2.68 16 12 C -0.10 -1.74 10.04 -39.62 -0.40 -2.13 16 13 C -0.11 -2.41 8.65 -39.35 -0.34 -2.75 16 14 C 0.20 4.15 6.22 -83.77 -0.52 3.63 16 15 N -0.70 -15.83 5.31 -11.19 -0.06 -15.89 16 16 C 0.54 15.09 7.45 -13.08 -0.10 15.00 16 17 O -0.56 -17.55 12.91 5.15 0.07 -17.48 16 18 C -0.54 -14.68 9.54 -35.69 -0.34 -15.02 16 19 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 20 C 0.09 2.32 5.50 -17.35 -0.10 2.22 16 21 N -0.76 -22.12 11.82 55.55 0.66 -21.46 16 22 Si 0.91 19.56 29.56 -169.99 -5.02 14.54 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 26 C -0.16 -2.88 9.62 -39.35 -0.38 -3.26 16 27 H 0.08 0.82 7.77 -51.93 -0.40 0.42 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.72 5.34 -51.93 -0.28 0.44 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 4.75 -51.93 -0.25 0.13 16 34 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.42 2.89 8.66 -34.47 -0.30 2.59 16 37 H 0.14 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.14 1.19 5.59 -51.92 -0.29 0.90 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.14 3.29 6.64 -52.49 -0.35 2.94 16 42 H 0.39 7.52 8.80 -40.82 -0.36 7.17 16 43 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 44 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -37.71 370.21 -9.37 -47.08 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.99 Total: 11.28 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.19 Total: -14.39 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.60 Total: -47.05 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.81 Total: -50.46 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 33.96 SS G_CDS: -0.54 Total: 33.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.71 -9.37 -47.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355638389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.077 kcal (2) G-P(sol) polarization free energy of solvation -37.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds