Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47130 * 2 1 4 4 C 1.53004 * 109.47105 * 240.00150 * 2 1 3 5 5 N 1.46495 * 109.47339 * 120.00105 * 2 1 3 6 6 S 1.65595 * 119.99974 * 38.92058 * 5 2 1 7 7 O 1.42098 * 104.27890 * 304.31691 * 6 5 2 8 8 O 1.42102 * 104.27995 * 176.46036 * 6 5 2 9 9 C 1.81401 * 104.45007 * 60.38914 * 6 5 2 10 10 C 1.50702 * 109.47308 * 171.01523 * 9 6 5 11 11 C 1.38358 * 119.95798 * 270.29812 * 10 9 6 12 12 C 1.38304 * 120.16479 * 180.25685 * 11 10 9 13 13 C 1.38080 * 120.08690 * 359.44033 * 12 11 10 14 14 C 1.39010 * 119.91359 * 0.27885 * 13 12 11 15 15 N 1.39535 * 120.08208 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00028 * 36.38203 * 15 14 13 17 17 O 1.21748 * 120.00073 * 5.22394 * 16 15 14 18 18 C 1.46178 * 120.00108 * 185.22821 * 16 15 14 19 19 H 1.08001 * 119.99570 * 359.97438 * 18 16 15 20 20 C 1.40119 * 119.99919 * 179.97438 * 18 16 15 21 21 N 1.30636 * 120.00375 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99752 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46954 * 90.00434 * 22 20 18 24 24 H 1.48501 * 109.46837 * 210.00206 * 22 20 18 25 25 H 1.48491 * 109.47218 * 330.00430 * 22 20 18 26 26 C 1.38044 * 119.95738 * 89.99542 * 10 9 6 27 27 H 1.09000 * 109.46971 * 299.99618 * 1 2 3 28 28 H 1.09000 * 109.47566 * 59.99829 * 1 2 3 29 29 H 1.09000 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46877 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47036 * 300.00496 * 3 2 1 32 32 H 1.09000 * 109.46881 * 60.00327 * 3 2 1 33 33 H 1.08995 * 109.46845 * 307.37441 * 4 2 1 34 34 H 1.09008 * 109.46831 * 67.36867 * 4 2 1 35 35 H 1.08994 * 109.47273 * 187.36600 * 4 2 1 36 36 H 0.97005 * 120.00027 * 218.91817 * 5 2 1 37 37 H 1.08993 * 109.47299 * 51.01543 * 9 6 5 38 38 H 1.09003 * 109.47096 * 291.01151 * 9 6 5 39 39 H 1.07992 * 119.91591 * 359.97438 * 11 10 9 40 40 H 1.08000 * 119.95438 * 179.72443 * 12 11 10 41 41 H 1.07998 * 120.04949 * 180.25743 * 13 12 11 42 42 H 0.97006 * 119.99945 * 216.37813 * 15 14 13 43 43 H 0.97000 * 120.00392 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.04538 * 0.04982 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 16 1.2424 -2.0471 1.7437 7 8 -0.1043 -1.6316 1.9247 8 8 2.0295 -2.4808 2.8446 9 6 1.3660 -3.2251 0.3698 10 6 0.8879 -4.5798 0.8249 11 6 1.7827 -5.4780 1.3790 12 6 1.3496 -6.7244 1.7933 13 6 0.0195 -7.0727 1.6659 14 6 -0.8835 -6.1709 1.1150 15 7 -2.2283 -6.5194 0.9840 16 6 -2.8248 -7.2713 1.9301 17 8 -2.2192 -7.5668 2.9442 18 6 -4.1987 -7.7323 1.7387 19 1 -4.7359 -7.4698 0.8393 20 6 -4.8186 -8.5145 2.7222 21 7 -4.1689 -8.8315 3.8103 22 14 -6.5746 -9.1029 2.4779 23 1 -6.5645 -10.4190 1.7902 24 1 -7.2390 -9.2399 3.7989 25 1 -7.3162 -8.1178 1.6505 26 6 -0.4434 -4.9208 0.6942 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.5729 -1.7037 -1.3177 34 1 1.7882 -0.1369 -2.1344 35 1 3.1219 -0.8368 -1.1859 36 1 2.7963 -0.3533 1.6673 37 1 2.4038 -3.2965 0.0446 38 1 0.7480 -2.8817 -0.4599 39 1 2.8227 -5.2067 1.4841 40 1 2.0518 -7.4245 2.2213 41 1 -0.3188 -8.0446 1.9934 42 1 -2.7339 -6.2203 0.2120 43 1 -4.5979 -9.3734 4.4909 44 1 -1.1420 -4.2177 0.2654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355638389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -115.883825 kcal Electronic energy + Delta-G solvation = -27665.271232 eV Core-core repulsion = 23708.370555 eV Total energy + Delta-G solvation = -3956.900676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96004 -39.10869 -38.99331 -37.96701 -37.00079 -35.57573 -34.57114 -33.69691 -31.85552 -30.86111 -28.96964 -28.26566 -28.18075 -27.60456 -23.79394 -23.32047 -21.65918 -21.20202 -20.13979 -19.52501 -18.67344 -18.04207 -17.63521 -17.31964 -17.21088 -16.92268 -16.36822 -15.95102 -15.77418 -15.20724 -15.09638 -14.85808 -14.78727 -14.49588 -14.29507 -14.05940 -13.78186 -13.52203 -13.44091 -13.23350 -13.21129 -13.07196 -12.82740 -12.78683 -12.68902 -12.55563 -12.48725 -12.37083 -12.31903 -12.14816 -12.04293 -11.98902 -11.45135 -11.07567 -10.83721 -10.51071 -10.00144 -9.70537 -8.86811 -8.39127 -6.97396 -0.88590 0.40214 0.43362 1.38512 1.40083 1.56033 1.77401 2.19439 2.33678 2.66179 2.87219 2.89545 3.20968 3.37652 3.55089 3.71732 3.85600 4.00125 4.05970 4.11885 4.24392 4.32843 4.39694 4.48946 4.58328 4.73086 4.76871 4.82198 4.92384 4.96521 5.02883 5.06345 5.23373 5.29452 5.32952 5.35230 5.44137 5.49595 5.50627 5.53245 5.74688 5.84245 6.13339 6.16402 6.33155 6.75446 7.30127 8.32264 8.54788 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.002703 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.641576 B =10357.373581 C =10980.176306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.163 3.837 3 C -0.148 4.148 4 C -0.187 4.187 5 N -1.101 6.101 6 S 2.605 3.395 7 O -0.987 6.987 8 O -0.996 6.996 9 C -0.562 4.562 10 C -0.079 4.079 11 C -0.138 4.138 12 C -0.101 4.101 13 C -0.146 4.146 14 C 0.159 3.841 15 N -0.695 5.695 16 C 0.528 3.472 17 O -0.608 6.608 18 C -0.564 4.564 19 H 0.094 0.906 20 C 0.027 3.973 21 N -0.814 5.814 22 Si 1.004 2.996 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.247 1.247 26 C -0.162 4.162 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.425 0.575 37 H 0.183 0.817 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.408 0.592 43 H 0.278 0.722 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.203 18.550 -14.862 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.075 3.925 3 C -0.206 4.206 4 C -0.246 4.246 5 N -0.863 5.863 6 S 2.702 3.298 7 O -0.976 6.976 8 O -0.986 6.986 9 C -0.691 4.691 10 C -0.082 4.082 11 C -0.158 4.158 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.062 3.938 15 N -0.340 5.340 16 C 0.335 3.665 17 O -0.494 6.494 18 C -0.600 4.600 19 H 0.112 0.888 20 C -0.189 4.189 21 N -0.443 5.443 22 Si 0.822 3.178 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.170 1.170 26 C -0.184 4.184 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.261 0.739 37 H 0.200 0.800 38 H 0.188 0.812 39 H 0.177 0.823 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.244 0.756 43 H 0.088 0.912 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.997 18.106 -13.197 26.418 hybrid contribution -0.666 -0.578 -0.190 0.902 sum 13.331 17.529 -13.387 25.772 Atomic orbital electron populations 1.22683 0.94365 1.03606 1.03771 1.20461 0.93374 0.94671 0.83968 1.22062 1.02381 0.92788 1.03408 1.22734 1.03269 1.01567 0.96982 1.55523 1.46379 1.43384 1.41000 1.04932 0.73776 0.75112 0.75967 1.93605 1.38180 1.80408 1.85452 1.93535 1.71131 1.82763 1.51156 1.29760 1.14071 1.06206 1.19071 1.18884 0.92904 0.94956 1.01415 1.21335 1.00966 0.93271 1.00207 1.21254 0.94364 0.97709 0.98573 1.21290 0.93884 0.99546 1.02046 1.18165 0.84993 0.93168 0.97469 1.43719 1.08412 1.55695 1.26218 1.18785 0.88333 0.77807 0.81557 1.90609 1.67451 1.60991 1.30335 1.21409 0.97275 1.34343 1.06984 0.88752 1.27060 1.04830 0.93842 0.93161 1.70153 1.39354 1.27703 1.07069 0.84929 0.74723 0.79426 0.78700 1.18363 1.19806 1.17020 1.21103 0.96748 0.94389 1.06145 0.92630 0.88823 0.92310 0.90509 0.89435 0.92665 0.91409 0.89112 0.89990 0.73859 0.79963 0.81200 0.82333 0.83631 0.88415 0.75595 0.91211 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 7.10 71.98 0.51 -2.45 16 2 C 0.16 1.84 1.16 3.61 0.00 1.84 16 3 C -0.15 -1.14 8.64 71.98 0.62 -0.52 16 4 C -0.19 -1.21 8.30 71.98 0.60 -0.61 16 5 N -1.10 -16.33 5.42 -152.21 -0.83 -17.16 16 6 S 2.61 63.45 4.99 -56.49 -0.28 63.17 16 7 O -0.99 -31.73 14.49 -127.65 -1.85 -33.58 16 8 O -1.00 -31.94 18.08 -127.65 -2.31 -34.24 16 9 C -0.56 -10.11 4.47 71.24 0.32 -9.79 16 10 C -0.08 -2.27 5.14 -19.88 -0.10 -2.37 16 11 C -0.14 -4.04 9.70 22.31 0.22 -3.82 16 12 C -0.10 -3.53 10.04 22.25 0.22 -3.31 16 13 C -0.15 -6.55 8.65 22.42 0.19 -6.36 16 14 C 0.16 6.97 6.22 38.30 0.24 7.21 16 15 N -0.70 -32.88 5.31 -307.52 -1.63 -34.52 16 16 C 0.53 31.07 7.45 86.31 0.64 31.71 16 17 O -0.61 -40.94 12.91 -4.50 -0.06 -41.00 16 18 C -0.56 -31.79 9.54 24.79 0.24 -31.56 16 19 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 20 C 0.03 1.51 5.50 85.33 0.47 1.98 16 21 N -0.81 -49.70 11.82 21.85 0.26 -49.44 16 22 Si 1.00 40.50 29.56 68.60 2.03 42.53 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 25 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 26 C -0.16 -5.61 9.62 22.42 0.22 -5.39 16 27 H 0.05 1.14 7.77 -2.39 -0.02 1.12 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.08 5.34 -2.39 -0.01 1.07 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.42 4.75 -2.39 -0.01 0.41 16 34 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.42 4.85 8.66 -96.74 -0.84 4.01 16 37 H 0.18 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.17 2.13 5.59 -2.39 -0.01 2.11 16 39 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.10 5.12 6.64 -2.91 -0.02 5.10 16 42 H 0.41 16.09 8.80 -92.70 -0.82 15.28 16 43 H 0.28 15.33 8.29 -92.71 -0.77 14.56 16 44 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -89.69 370.21 -0.89 -90.57 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.61 Total: 37.10 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.39 Total: -23.43 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -2.20 Total: -101.11 kcal Atomic # 8 Polarization: -104.61 SS G_CDS: -4.21 Total: -108.83 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 63.45 SS G_CDS: -0.28 Total: 63.17 kcal Total: -89.69 -0.89 -90.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355638389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.309 kcal (2) G-P(sol) polarization free energy of solvation -89.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds