Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47210 * 240.00003 * 2 1 3 5 5 N 1.46498 * 109.46998 * 119.99948 * 2 1 3 6 6 S 1.65600 * 120.00175 * 64.44381 * 5 2 1 7 7 O 1.42096 * 106.40013 * 312.71890 * 6 5 2 8 8 O 1.42101 * 106.40315 * 179.79973 * 6 5 2 9 9 C 1.76198 * 107.21788 * 66.25753 * 6 5 2 10 10 C 1.38262 * 120.00183 * 243.77091 * 9 6 5 11 11 C 1.38212 * 119.99879 * 179.72076 * 10 9 6 12 12 C 1.38248 * 119.99997 * 0.28090 * 11 10 9 13 13 C 1.38214 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.38216 * 120.00150 * 63.96321 * 9 6 5 15 15 C 1.50699 * 119.99884 * 0.04237 * 14 9 6 16 16 N 1.46501 * 109.47352 * 81.93154 * 15 14 9 17 17 C 1.34772 * 120.00275 * 184.04598 * 16 15 14 18 18 O 1.21687 * 120.00276 * 5.24788 * 17 16 15 19 19 C 1.46376 * 119.99982 * 185.24435 * 17 16 15 20 20 H 1.08000 * 120.00002 * 353.40287 * 19 17 16 21 21 C 1.40054 * 119.99711 * 173.39913 * 19 17 16 22 22 N 1.30672 * 120.00028 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99802 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47387 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47274 * 120.00026 * 23 21 19 26 26 H 1.48502 * 109.47175 * 240.00279 * 23 21 19 27 27 H 1.09002 * 109.46988 * 291.97241 * 1 2 3 28 28 H 1.08997 * 109.47363 * 51.96973 * 1 2 3 29 29 H 1.08997 * 109.47062 * 171.97196 * 1 2 3 30 30 H 1.09002 * 109.47049 * 184.60466 * 3 2 1 31 31 H 1.08994 * 109.46953 * 304.60947 * 3 2 1 32 32 H 1.09005 * 109.46991 * 64.61188 * 3 2 1 33 33 H 1.09000 * 109.46733 * 308.21176 * 4 2 1 34 34 H 1.09000 * 109.46940 * 68.21461 * 4 2 1 35 35 H 1.08999 * 109.47112 * 188.21676 * 4 2 1 36 36 H 0.97003 * 120.00234 * 244.43972 * 5 2 1 37 37 H 1.08004 * 119.99351 * 0.02562 * 10 9 6 38 38 H 1.07998 * 119.99493 * 180.25717 * 11 10 9 39 39 H 1.08006 * 119.99595 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.99952 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47094 * 201.93255 * 15 14 9 42 42 H 1.08999 * 109.47133 * 321.93334 * 15 14 9 43 43 H 0.97004 * 119.99796 * 4.04353 * 16 15 14 44 44 H 0.97004 * 119.99582 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 16 1.7110 -2.3045 1.4040 7 8 0.3297 -2.4889 1.1262 8 8 2.3113 -2.6716 2.6385 9 6 2.5912 -3.1692 0.1461 10 6 1.9002 -3.8895 -0.8107 11 6 2.5905 -4.5630 -1.8007 12 6 3.9720 -4.5213 -1.8309 13 6 4.6630 -3.8056 -0.8713 14 6 3.9725 -3.1308 0.1182 15 6 4.7258 -2.3501 1.1641 16 7 4.8492 -3.1566 2.3809 17 6 5.4176 -2.6301 3.4837 18 8 5.7416 -1.4572 3.5004 19 6 5.6453 -3.4690 4.6613 20 1 5.2631 -4.4788 4.6871 21 6 6.3590 -2.9623 5.7547 22 7 6.8211 -1.7404 5.7237 23 14 6.6502 -4.0331 7.2573 24 1 6.0302 -5.3655 7.0434 25 1 8.1102 -4.1962 7.4735 26 1 6.0421 -3.3893 8.4494 27 1 -0.3633 0.3845 0.9530 28 1 -0.3634 0.6331 -0.8094 29 1 -0.3633 -1.0176 -0.1435 30 1 3.1269 1.4436 -0.0825 31 1 1.6108 1.9796 -0.8458 32 1 1.7457 1.9319 0.9285 33 1 1.5618 -1.6977 -1.3256 34 1 1.8015 -0.1296 -2.1331 35 1 3.1200 -0.8502 -1.1788 36 1 2.5217 -0.2025 1.8665 37 1 0.8209 -3.9217 -0.7872 38 1 2.0505 -5.1222 -2.5505 39 1 4.5114 -5.0479 -2.6043 40 1 5.7422 -3.7734 -0.8947 41 1 5.7192 -2.1044 0.7888 42 1 4.1855 -1.4309 1.3908 43 1 4.5217 -4.0696 2.3929 44 1 7.3150 -1.3893 6.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355746988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -78.581457 kcal Electronic energy + Delta-G solvation = -29305.788568 eV Core-core repulsion = 25350.505444 eV Total energy + Delta-G solvation = -3955.283124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.61105 -38.02251 -37.22046 -36.59488 -35.50018 -33.76134 -32.28686 -31.44962 -30.89325 -30.65234 -27.49104 -27.28849 -26.80063 -24.91312 -23.22251 -21.61573 -20.58624 -19.58011 -19.12981 -17.79025 -17.26782 -17.01664 -16.30091 -15.71021 -15.37414 -15.19546 -14.61759 -14.44760 -14.32006 -14.24799 -13.93780 -13.73822 -13.34203 -13.12619 -13.02002 -12.88835 -12.40930 -12.22607 -12.16861 -12.05614 -11.88439 -11.71090 -11.53874 -11.42531 -11.38429 -11.28155 -11.18968 -11.01392 -10.86391 -10.63958 -10.52497 -10.31148 -10.10192 -9.50322 -9.30521 -8.98407 -8.75186 -7.49319 -7.36797 -6.08626 -4.49301 0.58126 0.86803 1.21252 3.08387 3.20364 3.28371 3.33678 3.47711 3.96093 4.21473 4.53898 4.63100 4.68879 4.71355 4.77802 4.81771 4.86089 4.91071 5.17102 5.20132 5.22157 5.40132 5.47446 5.49842 5.58228 5.65107 5.69988 5.74986 5.83566 5.85961 6.01071 6.02192 6.02986 6.08270 6.19210 6.25370 6.27773 6.40161 6.48527 6.78502 7.13242 7.55902 8.05822 8.18543 8.46733 9.15090 9.65287 10.71261 10.90365 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.004277 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.978166 B = 6544.411267 C = 7353.073663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.174 3.826 3 C -0.150 4.150 4 C -0.184 4.184 5 N -1.107 6.107 6 S 2.683 3.317 7 O -0.968 6.968 8 O -0.917 6.917 9 C -0.660 4.660 10 C -0.028 4.028 11 C -0.145 4.145 12 C -0.068 4.068 13 C -0.127 4.127 14 C 0.013 3.987 15 C 0.144 3.856 16 N -0.743 5.743 17 C 0.569 3.431 18 O -0.586 6.586 19 C -0.537 4.537 20 H 0.068 0.932 21 C 0.088 3.912 22 N -0.773 5.773 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.424 0.576 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.384 0.616 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 0.031 -17.722 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.208 4.208 4 C -0.242 4.242 5 N -0.869 5.869 6 S 2.772 3.228 7 O -0.958 6.958 8 O -0.907 6.907 9 C -0.746 4.746 10 C -0.047 4.047 11 C -0.164 4.164 12 C -0.087 4.087 13 C -0.146 4.146 14 C 0.011 3.989 15 C 0.019 3.981 16 N -0.399 5.399 17 C 0.373 3.627 18 O -0.469 6.469 19 C -0.574 4.574 20 H 0.086 0.914 21 C -0.131 4.131 22 N -0.402 5.402 23 Si 0.731 3.269 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.261 0.739 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.216 0.784 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.242 0.593 -17.104 19.945 hybrid contribution 0.727 -0.881 0.249 1.169 sum -9.515 -0.288 -16.856 19.358 Atomic orbital electron populations 1.22608 0.93862 1.04710 1.02537 1.20130 0.94036 0.93519 0.83715 1.22055 1.02061 0.93929 1.02787 1.22690 1.02584 1.01322 0.97645 1.55822 1.71758 1.27864 1.31434 1.02376 0.73786 0.72700 0.73980 1.93511 1.30999 1.85538 1.85800 1.93815 1.77122 1.80806 1.38973 1.30951 1.05865 1.17844 1.19951 1.20891 1.00157 0.92216 0.91428 1.21212 0.94549 1.01143 0.99464 1.21414 0.94478 0.95610 0.97149 1.21257 1.00540 0.97856 0.94932 1.19878 0.91443 0.93322 0.94274 1.20156 0.98939 0.93893 0.85159 1.45957 1.67621 1.15790 1.10526 1.18080 0.75970 0.87323 0.81304 1.90561 1.56055 1.17401 1.82882 1.20883 1.36793 1.00161 0.99590 0.91415 1.25682 0.93856 0.94688 0.98873 1.70030 1.26813 1.14159 1.29215 0.86351 0.78193 0.80875 0.81513 1.18791 1.20339 1.20211 0.91813 0.91816 0.89491 0.91541 0.91280 0.91618 0.91656 0.90735 0.91187 0.73940 0.84240 0.85414 0.85480 0.84973 0.91630 0.92009 0.78445 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.02 37.16 0.30 -1.64 16 2 C 0.17 1.94 1.14 -131.82 -0.15 1.78 16 3 C -0.15 -1.42 8.58 37.16 0.32 -1.10 16 4 C -0.18 -1.87 7.19 37.16 0.27 -1.60 16 5 N -1.11 -15.38 4.32 0.54 0.00 -15.38 16 6 S 2.68 43.47 4.70 -107.50 -0.51 42.96 16 7 O -0.97 -15.93 13.92 -57.17 -0.80 -16.73 16 8 O -0.92 -19.38 15.23 -57.17 -0.87 -20.25 16 9 C -0.66 -9.45 3.58 -39.58 -0.14 -9.59 16 10 C -0.03 -0.33 7.77 -39.58 -0.31 -0.64 16 11 C -0.14 -1.45 10.05 -39.59 -0.40 -1.85 16 12 C -0.07 -0.69 10.05 -39.59 -0.40 -1.09 16 13 C -0.13 -1.58 9.67 -39.59 -0.38 -1.97 16 14 C 0.01 0.19 4.73 -104.63 -0.50 -0.31 16 15 C 0.14 2.73 4.89 -5.19 -0.03 2.70 16 16 N -0.74 -17.29 3.71 -62.90 -0.23 -17.53 16 17 C 0.57 16.59 7.73 -12.99 -0.10 16.49 16 18 O -0.59 -18.91 15.04 5.20 0.08 -18.83 16 19 C -0.54 -15.85 9.54 -35.63 -0.34 -16.19 16 20 H 0.07 1.87 7.85 -52.49 -0.41 1.46 16 21 C 0.09 2.53 5.50 -17.36 -0.10 2.43 16 22 N -0.77 -23.60 11.85 55.55 0.66 -22.94 16 23 Si 0.91 20.93 29.56 -169.99 -5.02 15.90 16 24 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.09 1.06 5.87 -51.93 -0.30 0.75 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.68 4.83 -51.93 -0.25 0.43 16 34 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 35 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 36 H 0.42 6.10 8.15 -34.47 -0.28 5.82 16 37 H 0.14 1.50 7.34 -52.48 -0.39 1.12 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.13 1.51 8.05 -52.49 -0.42 1.09 16 41 H 0.07 1.24 8.02 -51.93 -0.42 0.82 16 42 H 0.06 1.18 5.49 -51.93 -0.29 0.89 16 43 H 0.38 8.41 8.42 -40.82 -0.34 8.06 16 44 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -38.01 362.82 -9.18 -47.19 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.00 Total: 12.69 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.95 Total: -12.56 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.43 Total: -55.84 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.59 Total: -55.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 43.47 SS G_CDS: -0.51 Total: 42.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.01 -9.18 -47.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355746988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.392 kcal (2) G-P(sol) polarization free energy of solvation -38.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds