Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47210 * 240.00003 * 2 1 3 5 5 N 1.46498 * 109.46998 * 119.99948 * 2 1 3 6 6 S 1.65600 * 120.00175 * 64.44381 * 5 2 1 7 7 O 1.42096 * 106.40013 * 312.71890 * 6 5 2 8 8 O 1.42101 * 106.40315 * 179.79973 * 6 5 2 9 9 C 1.76198 * 107.21788 * 66.25753 * 6 5 2 10 10 C 1.38262 * 120.00183 * 243.77091 * 9 6 5 11 11 C 1.38212 * 119.99879 * 179.72076 * 10 9 6 12 12 C 1.38248 * 119.99997 * 0.28090 * 11 10 9 13 13 C 1.38214 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.38216 * 120.00150 * 63.96321 * 9 6 5 15 15 C 1.50699 * 119.99884 * 0.04237 * 14 9 6 16 16 N 1.46501 * 109.47352 * 81.93154 * 15 14 9 17 17 C 1.34772 * 120.00275 * 184.04598 * 16 15 14 18 18 O 1.21687 * 120.00276 * 5.24788 * 17 16 15 19 19 C 1.46376 * 119.99982 * 185.24435 * 17 16 15 20 20 H 1.08000 * 120.00002 * 353.40287 * 19 17 16 21 21 C 1.40054 * 119.99711 * 173.39913 * 19 17 16 22 22 N 1.30672 * 120.00028 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99802 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47387 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47274 * 120.00026 * 23 21 19 26 26 H 1.48502 * 109.47175 * 240.00279 * 23 21 19 27 27 H 1.09002 * 109.46988 * 291.97241 * 1 2 3 28 28 H 1.08997 * 109.47363 * 51.96973 * 1 2 3 29 29 H 1.08997 * 109.47062 * 171.97196 * 1 2 3 30 30 H 1.09002 * 109.47049 * 184.60466 * 3 2 1 31 31 H 1.08994 * 109.46953 * 304.60947 * 3 2 1 32 32 H 1.09005 * 109.46991 * 64.61188 * 3 2 1 33 33 H 1.09000 * 109.46733 * 308.21176 * 4 2 1 34 34 H 1.09000 * 109.46940 * 68.21461 * 4 2 1 35 35 H 1.08999 * 109.47112 * 188.21676 * 4 2 1 36 36 H 0.97003 * 120.00234 * 244.43972 * 5 2 1 37 37 H 1.08004 * 119.99351 * 0.02562 * 10 9 6 38 38 H 1.07998 * 119.99493 * 180.25717 * 11 10 9 39 39 H 1.08006 * 119.99595 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.99952 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47094 * 201.93255 * 15 14 9 42 42 H 1.08999 * 109.47133 * 321.93334 * 15 14 9 43 43 H 0.97004 * 119.99796 * 4.04353 * 16 15 14 44 44 H 0.97004 * 119.99582 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 16 1.7110 -2.3045 1.4040 7 8 0.3297 -2.4889 1.1262 8 8 2.3113 -2.6716 2.6385 9 6 2.5912 -3.1692 0.1461 10 6 1.9002 -3.8895 -0.8107 11 6 2.5905 -4.5630 -1.8007 12 6 3.9720 -4.5213 -1.8309 13 6 4.6630 -3.8056 -0.8713 14 6 3.9725 -3.1308 0.1182 15 6 4.7258 -2.3501 1.1641 16 7 4.8492 -3.1566 2.3809 17 6 5.4176 -2.6301 3.4837 18 8 5.7416 -1.4572 3.5004 19 6 5.6453 -3.4690 4.6613 20 1 5.2631 -4.4788 4.6871 21 6 6.3590 -2.9623 5.7547 22 7 6.8211 -1.7404 5.7237 23 14 6.6502 -4.0331 7.2573 24 1 6.0302 -5.3655 7.0434 25 1 8.1102 -4.1962 7.4735 26 1 6.0421 -3.3893 8.4494 27 1 -0.3633 0.3845 0.9530 28 1 -0.3634 0.6331 -0.8094 29 1 -0.3633 -1.0176 -0.1435 30 1 3.1269 1.4436 -0.0825 31 1 1.6108 1.9796 -0.8458 32 1 1.7457 1.9319 0.9285 33 1 1.5618 -1.6977 -1.3256 34 1 1.8015 -0.1296 -2.1331 35 1 3.1200 -0.8502 -1.1788 36 1 2.5217 -0.2025 1.8665 37 1 0.8209 -3.9217 -0.7872 38 1 2.0505 -5.1222 -2.5505 39 1 4.5114 -5.0479 -2.6043 40 1 5.7422 -3.7734 -0.8947 41 1 5.7192 -2.1044 0.7888 42 1 4.1855 -1.4309 1.3908 43 1 4.5217 -4.0696 2.3929 44 1 7.3150 -1.3893 6.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355746988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -107.827149 kcal Electronic energy + Delta-G solvation = -29307.056757 eV Core-core repulsion = 25350.505444 eV Total energy + Delta-G solvation = -3956.551313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.69888 -39.22243 -38.91057 -38.02939 -36.89199 -35.46384 -34.45019 -32.42217 -32.24281 -31.83607 -28.77474 -28.26293 -28.11791 -26.57252 -24.21194 -22.81182 -21.74354 -21.45638 -20.29633 -19.38841 -18.62393 -18.37430 -17.46147 -17.40258 -16.76989 -16.40211 -16.13987 -15.85690 -15.68511 -15.38445 -15.17717 -14.91957 -14.66945 -14.38132 -14.34186 -14.06235 -13.75550 -13.42816 -13.29592 -13.21446 -13.07567 -13.01247 -12.98635 -12.87962 -12.73112 -12.56517 -12.53770 -12.44647 -12.24293 -12.18984 -11.97855 -11.66253 -11.55330 -10.91241 -10.54121 -10.28995 -10.07434 -9.67827 -9.35577 -8.25677 -6.78441 -0.58947 -0.19378 0.24564 1.38567 1.40072 1.57052 1.96650 2.26682 2.48683 2.52532 2.74343 3.30135 3.41546 3.59143 3.65040 3.73404 3.84286 3.95303 4.02096 4.06659 4.26677 4.29525 4.42373 4.54695 4.55430 4.71612 4.73577 4.74852 4.84627 4.91891 4.96075 4.99850 5.14038 5.17441 5.23343 5.34180 5.35963 5.38623 5.41406 5.52105 5.86895 5.94589 5.98844 6.24469 6.31168 6.91622 7.57744 8.54514 8.72471 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.004277 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.978166 B = 6544.411267 C = 7353.073663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.166 3.834 3 C -0.148 4.148 4 C -0.184 4.184 5 N -1.109 6.109 6 S 2.687 3.313 7 O -0.979 6.979 8 O -0.979 6.979 9 C -0.660 4.660 10 C -0.033 4.033 11 C -0.128 4.128 12 C -0.054 4.054 13 C -0.130 4.130 14 C -0.005 4.005 15 C 0.142 3.858 16 N -0.732 5.732 17 C 0.554 3.446 18 O -0.630 6.630 19 C -0.574 4.574 20 H 0.077 0.923 21 C 0.031 3.969 22 N -0.822 5.822 23 Si 0.994 3.006 24 H -0.252 1.252 25 H -0.262 1.262 26 H -0.269 1.269 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.140 0.860 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.389 0.611 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -1.804 -20.285 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.079 3.921 3 C -0.207 4.207 4 C -0.242 4.242 5 N -0.870 5.870 6 S 2.779 3.221 7 O -0.969 6.969 8 O -0.969 6.969 9 C -0.750 4.750 10 C -0.052 4.052 11 C -0.146 4.146 12 C -0.072 4.072 13 C -0.150 4.150 14 C -0.007 4.007 15 C 0.018 3.982 16 N -0.385 5.385 17 C 0.358 3.642 18 O -0.518 6.518 19 C -0.611 4.611 20 H 0.095 0.905 21 C -0.184 4.184 22 N -0.452 5.452 23 Si 0.813 3.187 24 H -0.176 1.176 25 H -0.187 1.187 26 H -0.194 1.194 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.253 0.747 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.185 0.815 40 H 0.158 0.842 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.838 -1.252 -19.699 22.518 hybrid contribution 0.829 -0.306 0.835 1.216 sum -10.009 -1.558 -18.864 21.412 Atomic orbital electron populations 1.22616 0.93526 1.04441 1.03181 1.20451 0.94350 0.94310 0.83014 1.22073 1.01769 0.93047 1.03772 1.22699 1.01917 1.01633 0.97956 1.55753 1.71752 1.27063 1.32443 1.01809 0.73522 0.73158 0.73567 1.93488 1.31576 1.85934 1.85875 1.93738 1.78163 1.82173 1.42854 1.30468 1.05341 1.18961 1.20237 1.21159 1.00888 0.91903 0.91298 1.21693 0.94681 0.99439 0.98823 1.21851 0.94732 0.93992 0.96621 1.21438 1.01147 0.97619 0.94760 1.19447 0.91487 0.95169 0.94609 1.20218 0.99360 0.94002 0.84644 1.45562 1.65953 1.16141 1.10876 1.18340 0.76089 0.86883 0.82854 1.90506 1.58123 1.19003 1.84132 1.21407 1.37859 1.00888 1.00907 0.90478 1.26890 0.92758 0.96220 1.02527 1.70174 1.27577 1.16542 1.30874 0.85039 0.78836 0.78710 0.76084 1.17564 1.18685 1.19411 0.92856 0.88815 0.90846 0.92205 0.88475 0.92120 0.91813 0.88021 0.92069 0.74655 0.83118 0.81360 0.81488 0.84249 0.92141 0.92794 0.77821 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.02 71.98 0.58 -3.17 16 2 C 0.17 3.64 1.14 3.60 0.00 3.64 16 3 C -0.15 -2.72 8.58 71.98 0.62 -2.10 16 4 C -0.18 -3.46 7.19 71.98 0.52 -2.94 16 5 N -1.11 -32.59 4.32 -152.22 -0.66 -33.25 16 6 S 2.69 91.01 4.70 -56.49 -0.27 90.74 16 7 O -0.98 -32.99 13.92 -128.00 -1.78 -34.78 16 8 O -0.98 -44.34 15.23 -128.00 -1.95 -46.29 16 9 C -0.66 -18.63 3.58 22.27 0.08 -18.55 16 10 C -0.03 -0.71 7.77 22.27 0.17 -0.54 16 11 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 12 C -0.05 -0.85 10.05 22.27 0.22 -0.63 16 13 C -0.13 -2.99 9.67 22.27 0.22 -2.77 16 14 C -0.01 -0.16 4.73 -19.87 -0.09 -0.25 16 15 C 0.14 5.68 4.89 85.63 0.42 6.10 16 16 N -0.73 -35.84 3.71 -471.15 -1.75 -37.59 16 17 C 0.55 34.08 7.73 86.36 0.67 34.75 16 18 O -0.63 -43.18 15.04 -4.31 -0.06 -43.24 16 19 C -0.57 -35.11 9.54 24.83 0.24 -34.87 16 20 H 0.08 4.39 7.85 -2.91 -0.02 4.36 16 21 C 0.03 1.80 5.50 85.31 0.47 2.27 16 22 N -0.82 -52.00 11.85 21.84 0.26 -51.74 16 23 Si 0.99 43.57 29.56 68.60 2.03 45.60 16 24 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.07 1.75 5.87 -2.39 -0.01 1.73 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 1.21 4.83 -2.39 -0.01 1.20 16 34 H 0.10 1.33 8.13 -2.39 -0.02 1.31 16 35 H 0.06 1.27 7.48 -2.39 -0.02 1.25 16 36 H 0.42 13.29 8.15 -96.74 -0.79 12.50 16 37 H 0.15 2.88 7.34 -2.91 -0.02 2.86 16 38 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.14 2.95 8.05 -2.91 -0.02 2.92 16 41 H 0.06 2.42 8.02 -2.39 -0.02 2.40 16 42 H 0.05 2.22 5.49 -2.39 -0.01 2.21 16 43 H 0.39 17.87 8.42 -92.70 -0.78 17.09 16 44 H 0.27 15.58 8.29 -92.71 -0.77 14.81 16 Total: -1.00 -88.14 362.82 -0.38 -88.52 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.52 Total: 42.86 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 4.33 Total: -20.82 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -2.15 Total: -122.59 kcal Atomic # 8 Polarization: -120.52 SS G_CDS: -3.80 Total: -124.31 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 91.01 SS G_CDS: -0.27 Total: 90.74 kcal Total: -88.14 -0.38 -88.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355746988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.308 kcal (2) G-P(sol) polarization free energy of solvation -88.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds