Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46851 * 2 1 4 4 S 1.65605 * 119.99415 * 165.00188 * 3 2 1 5 5 O 1.42098 * 106.40514 * 311.46053 * 4 3 2 6 6 O 1.42104 * 106.39906 * 178.53829 * 4 3 2 7 7 C 1.76195 * 107.21894 * 65.00404 * 4 3 2 8 8 C 1.38390 * 119.92592 * 269.97506 * 7 4 3 9 9 C 1.38334 * 120.29255 * 179.97438 * 8 7 4 10 10 C 1.37984 * 120.14288 * 359.74326 * 9 8 7 11 11 C 1.39546 * 119.85563 * 0.53004 * 10 9 8 12 12 C 1.47847 * 120.14710 * 179.74720 * 11 10 9 13 13 O 1.21551 * 119.99945 * 179.72484 * 12 11 10 14 14 N 1.34780 * 119.99752 * 359.72128 * 12 11 10 15 15 C 1.46500 * 119.99800 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.46973 * 325.00465 * 15 14 12 17 17 C 1.50703 * 109.46979 * 205.00044 * 15 14 12 18 18 H 1.07996 * 120.00052 * 327.46850 * 17 15 14 19 19 C 1.37877 * 119.99694 * 147.46723 * 17 15 14 20 20 N 1.31514 * 119.99716 * 176.06631 * 19 17 15 21 21 Si 1.86800 * 120.00176 * 356.06588 * 19 17 15 22 22 H 1.48503 * 109.47284 * 275.08677 * 21 19 17 23 23 H 1.48496 * 109.47106 * 35.08908 * 21 19 17 24 24 H 1.48500 * 109.47245 * 155.08920 * 21 19 17 25 25 C 1.53000 * 109.47016 * 85.00153 * 15 14 12 26 26 C 1.52999 * 109.47072 * 294.35292 * 25 15 14 27 27 C 1.37939 * 119.93112 * 89.99451 * 7 4 3 28 28 H 1.09004 * 109.46701 * 299.99672 * 1 2 3 29 29 H 1.08997 * 109.47111 * 59.99624 * 1 2 3 30 30 H 1.09006 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46701 * 240.00328 * 2 1 3 32 32 H 1.08997 * 109.47111 * 120.00376 * 2 1 3 33 33 H 0.96995 * 120.00149 * 345.00188 * 3 2 1 34 34 H 1.07997 * 119.84933 * 359.97438 * 8 7 4 35 35 H 1.07999 * 119.92990 * 179.97438 * 9 8 7 36 36 H 1.08004 * 120.06942 * 180.25555 * 10 9 8 37 37 H 0.96999 * 119.99699 * 0.02562 * 14 12 11 38 38 H 0.97000 * 119.99899 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47103 * 54.35672 * 25 15 14 40 40 H 1.09004 * 109.47065 * 174.35684 * 25 15 14 41 41 H 1.08996 * 109.47467 * 300.00157 * 26 25 15 42 42 H 1.08999 * 109.47294 * 60.00338 * 26 25 15 43 43 H 1.09004 * 109.47192 * 180.02562 * 26 25 15 44 44 H 1.07992 * 120.07264 * 0.02562 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8849 0.9832 1.5646 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9738 -0.8933 8 6 5.0348 -0.3295 -0.7584 9 6 5.8112 -0.9075 -1.7467 10 6 6.1421 -0.1885 -2.8770 11 6 5.7011 1.1281 -3.0167 12 6 6.0566 1.9062 -4.2225 13 8 5.6668 3.0511 -4.3438 14 7 6.8129 1.3460 -5.1872 15 6 7.1657 2.1173 -6.3818 16 1 6.3376 2.7743 -6.6477 17 6 7.4458 1.1746 -7.5237 18 1 7.8815 0.2057 -7.3296 19 6 7.1458 1.5492 -8.8163 20 7 7.4608 0.7595 -9.8196 21 14 6.2919 3.1783 -9.1423 22 1 4.8238 3.0046 -9.0012 23 1 6.7668 4.1904 -8.1650 24 1 6.6061 3.6349 -10.5200 25 6 8.4121 2.9576 -6.0967 26 6 8.0860 4.0095 -5.0346 27 6 4.9183 1.7055 -2.0154 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.4149 2.1089 -0.2174 34 1 4.7750 -0.8979 0.1225 35 1 6.1560 -1.9248 -1.6352 36 1 6.7449 -0.6422 -3.6498 37 1 7.1237 0.4323 -5.0905 38 1 7.2500 1.0231 -10.7290 39 1 9.2111 2.3109 -5.7344 40 1 8.7332 3.4536 -7.0127 41 1 7.2869 4.6561 -5.3969 42 1 7.7648 3.5135 -4.1186 43 1 8.9738 4.6084 -4.8318 44 1 4.5707 2.7227 -2.1192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358052997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -120.144043 kcal Electronic energy + Delta-G solvation = -27529.886318 eV Core-core repulsion = 23572.800904 eV Total energy + Delta-G solvation = -3957.085413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36152 -39.55985 -38.43018 -37.04183 -37.02276 -36.77919 -34.50705 -33.69217 -32.28457 -31.99800 -30.59660 -29.44310 -25.50922 -24.63994 -24.16646 -23.69307 -22.23366 -21.44390 -20.68548 -19.85398 -18.75391 -18.51942 -17.64184 -17.34287 -17.18349 -17.13127 -16.47056 -16.10928 -16.03136 -15.62340 -15.47149 -15.16265 -14.88718 -14.79575 -14.38880 -14.15292 -13.84865 -13.78569 -13.64664 -13.39096 -13.30713 -13.24058 -12.95755 -12.81841 -12.74002 -12.62229 -12.57830 -12.42725 -12.39940 -11.91672 -11.88244 -11.74003 -11.24000 -10.93039 -10.84864 -10.60327 -10.46277 -10.19640 -9.77676 -8.41067 -6.46824 -0.72561 -0.43710 -0.09833 1.27209 1.32582 1.43143 1.68147 2.01652 2.24932 2.29812 2.53510 2.74764 2.99158 3.25150 3.65680 3.73173 3.89936 4.02352 4.05289 4.25075 4.27994 4.31380 4.37486 4.41675 4.50677 4.53297 4.67425 4.72795 4.78726 4.89475 5.05816 5.08471 5.11680 5.13244 5.16260 5.20001 5.23371 5.37508 5.37730 5.51365 5.63822 5.69185 6.04323 6.09906 6.57370 6.79828 7.17857 7.34689 8.73598 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.002839 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.030372 B = 9861.517026 C =10002.261877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -1.109 6.109 4 S 2.720 3.280 5 O -0.972 6.972 6 O -0.993 6.993 7 C -0.688 4.688 8 C 0.001 3.999 9 C -0.132 4.132 10 C -0.031 4.031 11 C -0.165 4.165 12 C 0.540 3.460 13 O -0.580 6.580 14 N -0.694 5.694 15 C 0.242 3.758 16 H 0.030 0.970 17 C -0.526 4.526 18 H 0.061 0.939 19 C 0.037 3.963 20 N -0.928 5.928 21 Si 0.920 3.080 22 H -0.276 1.276 23 H -0.255 1.255 24 H -0.278 1.278 25 C -0.123 4.123 26 C -0.136 4.136 27 C 0.019 3.981 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.427 0.573 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.405 0.595 38 H 0.271 0.729 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 -6.636 21.680 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.873 5.873 4 S 2.809 3.191 5 O -0.961 6.961 6 O -0.983 6.983 7 C -0.775 4.775 8 C -0.019 4.019 9 C -0.150 4.150 10 C -0.050 4.050 11 C -0.169 4.169 12 C 0.328 3.672 13 O -0.462 6.462 14 N -0.343 5.343 15 C 0.138 3.862 16 H 0.048 0.952 17 C -0.564 4.564 18 H 0.079 0.921 19 C -0.164 4.164 20 N -0.566 5.566 21 Si 0.745 3.255 22 H -0.201 1.201 23 H -0.179 1.179 24 H -0.203 1.203 25 C -0.163 4.163 26 C -0.193 4.193 27 C -0.002 4.002 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.263 0.737 34 H 0.192 0.808 35 H 0.198 0.802 36 H 0.171 0.829 37 H 0.242 0.758 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.526 -5.563 22.107 25.109 hybrid contribution -0.201 0.494 -1.687 1.770 sum -10.727 -5.069 20.419 23.616 Atomic orbital electron populations 1.21975 0.92836 1.04057 1.02941 1.21593 0.97662 0.80249 1.03150 1.55358 1.27344 1.16216 1.88363 1.00980 0.72747 0.72097 0.73280 1.93556 1.84604 1.74714 1.43260 1.93575 1.85941 1.31506 1.87259 1.30915 1.22064 1.07411 1.17074 1.21568 0.90500 0.91210 0.98578 1.21700 0.98522 1.02289 0.92487 1.22022 0.93504 0.91368 0.98119 1.20126 1.04418 0.96555 0.95801 1.18681 0.78558 0.86409 0.83569 1.90729 1.56083 1.19368 1.80045 1.46234 1.51136 1.17488 1.19416 1.18942 0.93435 0.90944 0.82833 0.95222 1.21170 1.41865 1.02941 0.90456 0.92131 1.25523 0.95339 0.99506 0.96012 1.69961 1.47770 1.38951 0.99910 0.86156 0.79562 0.81774 0.78003 1.20132 1.17853 1.20310 1.22012 0.98890 0.97204 0.98150 1.21793 1.00064 0.98627 0.98859 1.20909 0.90555 0.98835 0.89859 0.91624 0.91852 0.89449 0.90611 0.89335 0.73659 0.80811 0.80210 0.82892 0.75823 0.91997 0.91698 0.92850 0.94736 0.93515 0.92343 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.05 71.98 0.72 -0.37 16 2 C 0.10 0.93 6.94 86.38 0.60 1.53 16 3 N -1.11 -14.99 6.00 -187.48 -1.12 -16.11 16 4 S 2.72 55.22 5.74 -56.49 -0.32 54.89 16 5 O -0.97 -22.09 16.74 -128.00 -2.14 -24.23 16 6 O -0.99 -28.20 17.27 -128.00 -2.21 -30.41 16 7 C -0.69 -14.59 5.94 22.23 0.13 -14.46 16 8 C 0.00 0.01 9.52 22.33 0.21 0.22 16 9 C -0.13 -1.93 10.03 22.23 0.22 -1.71 16 10 C -0.03 -0.66 9.54 22.53 0.21 -0.44 16 11 C -0.17 -4.83 5.87 -20.09 -0.12 -4.95 16 12 C 0.54 20.51 6.37 86.79 0.55 21.07 16 13 O -0.58 -26.11 13.49 -3.88 -0.05 -26.16 16 14 N -0.69 -26.66 4.98 -448.97 -2.24 -28.89 16 15 C 0.24 11.16 1.82 44.25 0.08 11.24 16 16 H 0.03 1.52 4.92 -2.39 -0.01 1.51 16 17 C -0.53 -27.58 9.05 25.60 0.23 -27.35 16 18 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 19 C 0.04 2.04 5.47 84.65 0.46 2.50 16 20 N -0.93 -54.14 13.96 21.45 0.30 -53.84 16 21 Si 0.92 44.00 26.69 68.60 1.83 45.84 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.25 -11.93 6.88 99.48 0.68 -11.25 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C -0.12 -5.21 5.54 30.59 0.17 -5.04 16 26 C -0.14 -5.36 8.53 71.98 0.61 -4.74 16 27 C 0.02 0.53 9.07 22.53 0.20 0.73 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.72 7.75 -2.39 -0.02 0.70 16 33 H 0.43 4.70 8.65 -96.75 -0.84 3.86 16 34 H 0.17 1.63 7.60 -2.91 -0.02 1.61 16 35 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 2.69 6.41 -2.91 -0.02 2.67 16 37 H 0.41 13.17 6.63 -92.71 -0.61 12.56 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.11 16 39 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.05 2.33 7.90 -2.38 -0.02 2.31 16 41 H 0.03 1.45 7.88 -2.39 -0.02 1.43 16 42 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 43 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 44 H 0.13 4.14 7.20 -2.91 -0.02 4.12 16 Total: -1.00 -76.97 373.55 -2.09 -79.06 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.43 Total: 21.64 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.30 Total: -21.79 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.06 Total: -98.84 kcal Atomic # 8 Polarization: -76.40 SS G_CDS: -4.41 Total: -80.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.83 Total: 45.84 kcal Atomic # 16 Polarization: 55.22 SS G_CDS: -0.32 Total: 54.89 kcal Total: -76.97 -2.09 -79.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358052997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.085 kcal (2) G-P(sol) polarization free energy of solvation -76.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds