Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47427 * 119.99525 * 9 7 5 12 12 H 1.48503 * 109.47407 * 239.99868 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 18 18 C 1.53004 * 109.46763 * 60.00061 * 16 14 13 19 19 N 1.46500 * 109.47299 * 180.02562 * 16 14 13 20 20 S 1.65600 * 119.99613 * 145.00111 * 19 16 14 21 21 O 1.42105 * 106.39950 * 178.54388 * 20 19 16 22 22 O 1.42102 * 106.40321 * 311.45953 * 20 19 16 23 23 C 1.76196 * 107.22055 * 65.00060 * 20 19 16 24 24 C 1.38228 * 119.99997 * 269.72446 * 23 20 19 25 25 C 1.38238 * 119.99781 * 179.76412 * 24 23 20 26 26 C 1.38231 * 120.00215 * 0.51054 * 25 24 23 27 27 C 1.38235 * 119.99736 * 359.74259 * 26 25 24 28 28 C 1.38238 * 119.99596 * 89.99482 * 23 20 19 29 29 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 31 31 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 32 32 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 33 33 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 34 34 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 36 36 H 1.09000 * 109.47019 * 299.99778 * 18 16 14 37 37 H 1.08995 * 109.46910 * 60.00609 * 18 16 14 38 38 H 1.09002 * 109.46848 * 180.02562 * 18 16 14 39 39 H 0.96994 * 119.99944 * 325.00729 * 19 16 14 40 40 H 1.08001 * 120.00080 * 359.97438 * 24 23 20 41 41 H 1.08006 * 119.99709 * 180.22852 * 25 24 23 42 42 H 1.08000 * 120.00051 * 179.72416 * 26 25 24 43 43 H 1.08001 * 120.00362 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00295 * 0.02562 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5988 1.5440 0.1931 11 1 6.4000 1.6155 2.6091 12 1 6.4962 -0.5192 1.4627 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3431 2.6234 -0.4378 16 6 0.0342 3.3328 -2.6568 17 1 0.7228 4.1512 -2.8673 18 6 0.0844 2.3172 -3.8000 19 7 -1.3267 3.8604 -2.5309 20 16 -1.7377 5.2782 -3.2814 21 8 -3.1133 5.4971 -2.9998 22 8 -0.7193 6.2143 -2.9563 23 6 -1.6232 5.0015 -5.0178 24 6 -0.4333 5.2419 -5.6789 25 6 -0.3421 5.0202 -7.0404 26 6 -1.4437 4.5681 -7.7424 27 6 -2.6351 4.3327 -7.0821 28 6 -2.7249 4.5494 -5.7197 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0605 2.9502 35 1 2.2720 2.1231 -1.9978 36 1 1.0972 1.9251 -3.8935 37 1 -0.6041 1.4989 -3.5894 38 1 -0.2037 2.8043 -4.7316 39 1 -1.9869 3.3793 -2.0080 40 1 0.4260 5.5997 -5.1313 41 1 0.5887 5.2045 -7.5563 42 1 -1.3737 4.3992 -8.8068 43 1 -3.4960 3.9799 -7.6305 44 1 -3.6559 4.3661 -5.2040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358061572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -89.645757 kcal Electronic energy + Delta-G solvation = -28035.377803 eV Core-core repulsion = 24079.614895 eV Total energy + Delta-G solvation = -3955.762908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.52300 -39.37174 -37.34235 -35.94452 -35.82335 -34.74651 -32.50577 -31.65577 -31.39811 -31.11760 -29.66603 -26.96522 -24.25792 -23.53263 -23.10596 -22.88853 -20.40200 -19.76223 -19.37636 -18.45107 -18.04786 -17.09436 -16.34768 -16.19224 -15.65875 -15.54204 -15.03829 -14.93484 -14.82758 -14.64438 -14.05236 -13.87578 -13.55258 -13.32533 -13.19748 -12.73514 -12.61514 -12.45948 -12.19414 -12.14660 -12.02193 -11.89995 -11.73220 -11.63112 -11.42496 -11.27906 -11.00215 -10.98428 -10.87053 -10.33874 -10.22246 -9.90397 -9.75437 -9.65520 -9.40684 -9.07986 -8.96746 -8.53293 -7.89727 -6.15178 -4.24703 0.19175 0.51726 0.92630 2.79738 3.19532 3.22029 3.25342 3.30589 3.32694 3.66381 3.92896 4.15570 4.33940 4.51430 4.52295 4.59940 4.85121 4.93669 4.99762 5.06415 5.15906 5.17085 5.30330 5.37602 5.54772 5.60282 5.72265 5.84492 5.94580 5.97530 6.04104 6.34867 6.41090 6.45193 6.61220 6.94643 6.98901 7.15489 7.31176 7.38489 7.58054 7.68624 7.86272 8.14315 8.58282 8.73278 9.03271 9.42619 10.90136 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.002906 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.381026 B = 9634.303695 C =10026.256023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.502 3.498 15 O -0.538 6.538 16 C 0.125 3.875 17 H 0.111 0.889 18 C -0.169 4.169 19 N -1.094 6.094 20 S 2.697 3.303 21 O -0.958 6.958 22 O -0.954 6.954 23 C -0.675 4.675 24 C -0.021 4.021 25 C -0.140 4.140 26 C -0.066 4.066 27 C -0.142 4.142 28 C -0.018 4.018 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.389 0.611 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.427 0.573 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 5.493 -20.404 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.284 3.716 15 O -0.416 6.416 16 C 0.014 3.986 17 H 0.129 0.871 18 C -0.229 4.229 19 N -0.855 5.855 20 S 2.786 3.214 21 O -0.948 6.948 22 O -0.944 6.944 23 C -0.761 4.761 24 C -0.040 4.040 25 C -0.159 4.159 26 C -0.084 4.084 27 C -0.161 4.161 28 C -0.037 4.037 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.222 0.778 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.265 0.735 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.376 6.232 -19.208 22.265 hybrid contribution 1.169 -0.704 -0.763 1.563 sum -8.207 5.528 -19.971 22.288 Atomic orbital electron populations 1.21854 0.98378 0.98044 1.01236 1.21932 0.92579 0.99755 1.02335 1.18830 0.94320 0.89170 0.80853 0.93178 1.21257 0.90639 1.39020 1.06367 0.91954 1.24885 0.98626 0.94789 0.95376 1.69895 1.35076 1.37605 1.09308 0.86403 0.84839 0.77732 0.78165 1.19718 1.20888 1.20921 1.46476 1.14124 1.55778 1.18697 1.20134 0.83293 0.79705 0.88435 1.90675 1.51446 1.59468 1.39977 1.20778 0.83674 0.98396 0.95779 0.87079 1.22318 1.03918 0.99540 0.97077 1.55200 1.18903 1.45264 1.66135 1.01805 0.73438 0.72733 0.73426 1.93592 1.33125 1.83959 1.84104 1.93603 1.59512 1.58862 1.82418 1.31060 1.01240 1.16881 1.26942 1.21009 0.95685 0.92141 0.95145 1.21326 0.99321 1.00882 0.94388 1.21508 0.92791 0.93942 1.00165 1.21313 0.98445 1.01685 0.94637 1.20958 0.96744 0.91297 0.94699 0.95886 0.93121 0.94267 0.95003 0.88269 0.92590 0.77823 0.90332 0.91079 0.91571 0.73523 0.84057 0.84928 0.85299 0.85074 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.41 7.59 -51.93 -0.39 1.02 16 5 C -0.53 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.16 11.29 55.43 0.63 -23.54 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.70 -13.38 4.92 -54.93 -0.27 -13.65 16 14 C 0.50 9.09 5.79 -10.98 -0.06 9.03 16 15 O -0.54 -11.61 13.09 5.56 0.07 -11.54 16 16 C 0.13 1.64 3.32 -69.08 -0.23 1.41 16 17 H 0.11 1.30 7.50 -51.93 -0.39 0.91 16 18 C -0.17 -1.72 9.41 37.16 0.35 -1.37 16 19 N -1.09 -13.99 5.27 -5.88 -0.03 -14.02 16 20 S 2.70 34.18 5.72 -107.50 -0.61 33.56 16 21 O -0.96 -14.20 17.28 -57.17 -0.99 -15.19 16 22 O -0.95 -14.69 16.61 -57.17 -0.95 -15.64 16 23 C -0.67 -6.83 5.06 -39.59 -0.20 -7.03 16 24 C -0.02 -0.19 8.60 -39.58 -0.34 -0.53 16 25 C -0.14 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.07 -0.43 10.05 -39.58 -0.40 -0.83 16 27 C -0.14 -1.03 10.05 -39.58 -0.40 -1.42 16 28 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 31 H 0.04 0.78 5.62 -51.92 -0.29 0.49 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.39 6.26 7.95 -40.82 -0.32 5.94 16 36 H 0.08 0.72 7.56 -51.93 -0.39 0.33 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.56 6.18 -51.93 -0.32 0.24 16 39 H 0.43 5.48 8.21 -34.47 -0.28 5.20 16 40 H 0.14 1.15 7.61 -52.49 -0.40 0.76 16 41 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.14 1.12 7.62 -52.49 -0.40 0.72 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -33.61 371.39 -10.00 -43.61 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.99 Total: 9.99 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.43 Total: -14.32 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.32 Total: -51.21 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.87 Total: -42.37 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 34.18 SS G_CDS: -0.61 Total: 33.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.61 -10.00 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.033 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds