Wall clock time and date at job start Sat Apr 11 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 H 1.09004 * 109.46893 * 54.99924 * 3 2 1 5 5 C 1.50700 * 109.47065 * 174.99690 * 3 2 1 6 6 H 1.07995 * 119.99892 * 119.99323 * 5 3 2 7 7 C 1.37875 * 120.00169 * 300.00656 * 5 3 2 8 8 N 1.31518 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47518 * 119.99150 * 9 7 5 12 12 H 1.48498 * 109.47478 * 239.99441 * 9 7 5 13 13 N 1.46493 * 109.47062 * 294.99820 * 3 2 1 14 14 C 1.34782 * 120.00012 * 85.00410 * 13 3 2 15 15 O 1.21278 * 119.99986 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99622 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.47690 * 60.00238 * 16 14 13 18 18 C 1.52992 * 109.47120 * 299.99414 * 16 14 13 19 19 N 1.46500 * 109.46753 * 179.97438 * 16 14 13 20 20 S 1.65606 * 120.00055 * 214.99980 * 19 16 14 21 21 O 1.42105 * 106.40008 * 311.45637 * 20 19 16 22 22 O 1.42098 * 106.40370 * 178.53822 * 20 19 16 23 23 C 1.76193 * 107.21910 * 64.99793 * 20 19 16 24 24 C 1.38241 * 119.99935 * 269.73003 * 23 20 19 25 25 C 1.38234 * 119.99662 * 179.76824 * 24 23 20 26 26 C 1.38232 * 120.00538 * 0.50245 * 25 24 23 27 27 C 1.38234 * 119.99602 * 359.75045 * 26 25 24 28 28 C 1.38232 * 120.00400 * 90.00069 * 23 20 19 29 29 H 1.08991 * 109.47087 * 300.00329 * 1 2 3 30 30 H 1.09000 * 109.46597 * 60.00022 * 1 2 3 31 31 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46693 * 239.99566 * 2 1 3 33 33 H 1.09000 * 109.46597 * 119.99978 * 2 1 3 34 34 H 0.97000 * 119.99920 * 180.02562 * 8 7 5 35 35 H 0.97004 * 120.00403 * 264.99758 * 13 3 2 36 36 H 1.09010 * 109.47442 * 180.02562 * 18 16 14 37 37 H 1.09003 * 109.47507 * 300.00423 * 18 16 14 38 38 H 1.08994 * 109.47421 * 60.00650 * 18 16 14 39 39 H 0.97002 * 120.00335 * 35.00020 * 19 16 14 40 40 H 1.08001 * 120.00131 * 359.97438 * 24 23 20 41 41 H 1.08005 * 119.99575 * 180.22739 * 25 24 23 42 42 H 1.07998 * 120.00423 * 179.72774 * 26 25 24 43 43 H 1.08000 * 120.00363 * 179.97438 * 27 26 25 44 44 H 1.07999 * 119.99964 * 0.02562 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3372 2.1733 9 14 6.0049 0.8811 1.3819 10 1 6.5988 1.5462 0.1944 11 1 6.3990 1.6166 2.6103 12 1 6.4971 -0.5176 1.4631 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3395 2.6320 -0.4344 16 6 0.0365 3.3376 -2.6549 17 1 0.0674 2.6129 -3.4685 18 6 1.0070 4.4819 -2.9539 19 7 -1.3224 3.8699 -2.5272 20 16 -2.3399 3.8648 -3.8338 21 8 -1.6020 4.4098 -4.9191 22 8 -3.5741 4.4062 -3.3834 23 6 -2.6552 2.1802 -4.2426 24 6 -1.8377 1.5227 -5.1428 25 6 -2.0823 0.1996 -5.4599 26 6 -3.1505 -0.4630 -4.8848 27 6 -3.9711 0.1961 -3.9886 28 6 -3.7235 1.5176 -3.6675 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0606 2.9502 35 1 2.2721 2.1231 -1.9978 36 1 0.7183 4.9692 -3.8853 37 1 0.9760 5.2067 -2.1403 38 1 2.0178 4.0856 -3.0491 39 1 -1.6262 4.2254 -1.6774 40 1 -1.0060 2.0417 -5.5959 41 1 -1.4414 -0.3151 -6.1605 42 1 -3.3442 -1.4953 -5.1359 43 1 -4.8060 -0.3214 -3.5396 44 1 -4.3650 2.0326 -2.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358061578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:33 Heat of formation + Delta-G solvation = -91.078741 kcal Electronic energy + Delta-G solvation = -28365.360572 eV Core-core repulsion = 24409.535525 eV Total energy + Delta-G solvation = -3955.825047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.48476 -39.27468 -37.34493 -35.96004 -35.81776 -34.74092 -32.52988 -31.53514 -31.27156 -31.16731 -29.57523 -27.01918 -24.23448 -23.44489 -23.01790 -22.86165 -20.42879 -19.75086 -19.40179 -18.38105 -17.94668 -17.15971 -16.29596 -16.20279 -15.61748 -15.55358 -15.12860 -14.83512 -14.71193 -14.58825 -13.95354 -13.77428 -13.56514 -13.27101 -13.05034 -12.75757 -12.61366 -12.45913 -12.23267 -12.13633 -11.96915 -11.79420 -11.58033 -11.51910 -11.49935 -11.30716 -11.01644 -10.98369 -10.89352 -10.36387 -10.26288 -9.87909 -9.70399 -9.63167 -9.27602 -9.11329 -8.98493 -8.56088 -7.92730 -6.18071 -4.27687 0.25060 0.62570 1.05953 2.80264 3.19506 3.21170 3.27789 3.28853 3.30725 3.67271 3.96973 4.19038 4.31582 4.58952 4.63969 4.72012 4.80406 5.04444 5.08436 5.11791 5.14267 5.25727 5.41449 5.43751 5.66456 5.78730 5.82632 5.97093 6.01274 6.10257 6.21987 6.31756 6.37872 6.58186 6.58270 6.94440 6.96061 7.12038 7.28119 7.35194 7.54984 7.65627 7.82833 8.11220 8.55311 8.70261 9.00089 9.39827 10.87225 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003379 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.969193 B = 8283.798769 C = 9065.486845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.498 3.502 15 O -0.538 6.538 16 C 0.132 3.868 17 H 0.100 0.900 18 C -0.167 4.167 19 N -1.093 6.093 20 S 2.698 3.302 21 O -0.956 6.956 22 O -0.959 6.959 23 C -0.678 4.678 24 C -0.025 4.025 25 C -0.140 4.140 26 C -0.064 4.064 27 C -0.140 4.140 28 C -0.015 4.015 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.389 0.611 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.427 0.573 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 0.818 -14.578 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.280 3.720 15 O -0.417 6.417 16 C 0.020 3.980 17 H 0.117 0.883 18 C -0.226 4.226 19 N -0.855 5.855 20 S 2.787 3.213 21 O -0.946 6.946 22 O -0.949 6.949 23 C -0.764 4.764 24 C -0.044 4.044 25 C -0.159 4.159 26 C -0.082 4.082 27 C -0.159 4.159 28 C -0.034 4.034 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.222 0.778 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.265 0.735 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.890 1.340 -14.284 18.012 hybrid contribution 1.217 -0.920 0.256 1.547 sum -9.673 0.420 -14.029 17.046 Atomic orbital electron populations 1.21838 0.98392 0.98016 1.01180 1.21941 0.92542 0.99827 1.02334 1.18820 0.94319 0.89139 0.80847 0.93190 1.21255 0.90621 1.39056 1.06351 0.91948 1.24881 0.98623 0.94759 0.95373 1.69901 1.35083 1.37601 1.09323 0.86404 0.84820 0.77777 0.78159 1.19707 1.20885 1.20907 1.46488 1.14289 1.55560 1.18731 1.20275 0.83216 0.79633 0.88859 1.90670 1.51332 1.59648 1.40005 1.20708 0.82671 0.96559 0.98016 0.88271 1.22272 0.98728 0.98162 1.03486 1.55283 1.23106 1.77115 1.29960 1.01773 0.72798 0.73783 0.72917 1.93588 1.72368 1.75795 1.52817 1.93590 1.42946 1.77055 1.81336 1.30988 1.07006 1.27018 1.11432 1.20984 0.96317 0.94600 0.92494 1.21312 0.98542 0.94827 1.01226 1.21514 0.93261 0.99780 0.93666 1.21324 1.00664 0.94870 0.99052 1.20954 0.93358 0.94436 0.94636 0.93125 0.94355 0.95940 0.95035 0.88246 0.92590 0.77789 0.90321 0.91207 0.90510 0.73513 0.84162 0.84934 0.85219 0.84982 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.38 2.24 -69.09 -0.15 6.23 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.39 8.73 -34.44 -0.30 -13.69 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.89 11.29 55.43 0.63 -23.27 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.70 -13.15 4.91 -54.94 -0.27 -13.42 16 14 C 0.50 8.78 5.79 -10.98 -0.06 8.71 16 15 O -0.54 -11.25 13.13 5.56 0.07 -11.18 16 16 C 0.13 1.74 3.18 -69.09 -0.22 1.52 16 17 H 0.10 1.09 7.24 -51.93 -0.38 0.72 16 18 C -0.17 -1.95 9.41 37.15 0.35 -1.60 16 19 N -1.09 -14.03 5.26 -5.89 -0.03 -14.06 16 20 S 2.70 34.11 5.65 -107.50 -0.61 33.50 16 21 O -0.96 -13.26 16.54 -57.17 -0.95 -14.20 16 22 O -0.96 -14.27 17.28 -57.17 -0.99 -15.26 16 23 C -0.68 -8.08 5.81 -39.58 -0.23 -8.31 16 24 C -0.02 -0.26 8.92 -39.58 -0.35 -0.62 16 25 C -0.14 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.06 -0.58 10.05 -39.59 -0.40 -0.98 16 27 C -0.14 -1.39 10.05 -39.58 -0.40 -1.78 16 28 C -0.01 -0.17 9.52 -39.58 -0.38 -0.54 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 30 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.57 5.95 -51.93 -0.31 2.27 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.39 6.22 7.96 -40.82 -0.32 5.89 16 36 H 0.08 0.85 7.64 -51.92 -0.40 0.46 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 39 H 0.43 5.51 8.21 -34.47 -0.28 5.23 16 40 H 0.14 1.26 7.61 -52.49 -0.40 0.86 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.14 1.47 7.62 -52.49 -0.40 1.07 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -32.55 373.44 -10.06 -42.60 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.05 Total: 11.57 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.47 Total: -16.82 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.33 Total: -50.75 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.86 Total: -40.64 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 34.11 SS G_CDS: -0.61 Total: 33.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.55 -10.06 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.475 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds