Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 H 1.09004 * 109.46893 * 54.99924 * 3 2 1 5 5 C 1.50700 * 109.47065 * 174.99690 * 3 2 1 6 6 H 1.07995 * 119.99892 * 119.99323 * 5 3 2 7 7 C 1.37875 * 120.00169 * 300.00656 * 5 3 2 8 8 N 1.31518 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47518 * 119.99150 * 9 7 5 12 12 H 1.48498 * 109.47478 * 239.99441 * 9 7 5 13 13 N 1.46493 * 109.47062 * 294.99820 * 3 2 1 14 14 C 1.34782 * 120.00012 * 85.00410 * 13 3 2 15 15 O 1.21278 * 119.99986 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99622 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.47690 * 60.00238 * 16 14 13 18 18 C 1.52992 * 109.47120 * 299.99414 * 16 14 13 19 19 N 1.46500 * 109.46753 * 179.97438 * 16 14 13 20 20 S 1.65606 * 120.00055 * 214.99980 * 19 16 14 21 21 O 1.42105 * 106.40008 * 311.45637 * 20 19 16 22 22 O 1.42098 * 106.40370 * 178.53822 * 20 19 16 23 23 C 1.76193 * 107.21910 * 64.99793 * 20 19 16 24 24 C 1.38241 * 119.99935 * 269.73003 * 23 20 19 25 25 C 1.38234 * 119.99662 * 179.76824 * 24 23 20 26 26 C 1.38232 * 120.00538 * 0.50245 * 25 24 23 27 27 C 1.38234 * 119.99602 * 359.75045 * 26 25 24 28 28 C 1.38232 * 120.00400 * 90.00069 * 23 20 19 29 29 H 1.08991 * 109.47087 * 300.00329 * 1 2 3 30 30 H 1.09000 * 109.46597 * 60.00022 * 1 2 3 31 31 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46693 * 239.99566 * 2 1 3 33 33 H 1.09000 * 109.46597 * 119.99978 * 2 1 3 34 34 H 0.97000 * 119.99920 * 180.02562 * 8 7 5 35 35 H 0.97004 * 120.00403 * 264.99758 * 13 3 2 36 36 H 1.09010 * 109.47442 * 180.02562 * 18 16 14 37 37 H 1.09003 * 109.47507 * 300.00423 * 18 16 14 38 38 H 1.08994 * 109.47421 * 60.00650 * 18 16 14 39 39 H 0.97002 * 120.00335 * 35.00020 * 19 16 14 40 40 H 1.08001 * 120.00131 * 359.97438 * 24 23 20 41 41 H 1.08005 * 119.99575 * 180.22739 * 25 24 23 42 42 H 1.07998 * 120.00423 * 179.72774 * 26 25 24 43 43 H 1.08000 * 120.00363 * 179.97438 * 27 26 25 44 44 H 1.07999 * 119.99964 * 0.02562 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3372 2.1733 9 14 6.0049 0.8811 1.3819 10 1 6.5988 1.5462 0.1944 11 1 6.3990 1.6166 2.6103 12 1 6.4971 -0.5176 1.4631 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3395 2.6320 -0.4344 16 6 0.0365 3.3376 -2.6549 17 1 0.0674 2.6129 -3.4685 18 6 1.0070 4.4819 -2.9539 19 7 -1.3224 3.8699 -2.5272 20 16 -2.3399 3.8648 -3.8338 21 8 -1.6020 4.4098 -4.9191 22 8 -3.5741 4.4062 -3.3834 23 6 -2.6552 2.1802 -4.2426 24 6 -1.8377 1.5227 -5.1428 25 6 -2.0823 0.1996 -5.4599 26 6 -3.1505 -0.4630 -4.8848 27 6 -3.9711 0.1961 -3.9886 28 6 -3.7235 1.5176 -3.6675 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0606 2.9502 35 1 2.2721 2.1231 -1.9978 36 1 0.7183 4.9692 -3.8853 37 1 0.9760 5.2067 -2.1403 38 1 2.0178 4.0856 -3.0491 39 1 -1.6262 4.2254 -1.6774 40 1 -1.0060 2.0417 -5.5959 41 1 -1.4414 -0.3151 -6.1605 42 1 -3.3442 -1.4953 -5.1359 43 1 -4.8060 -0.3214 -3.5396 44 1 -4.3650 2.0326 -2.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358061578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = -114.719054 kcal Electronic energy + Delta-G solvation = -28366.385693 eV Core-core repulsion = 24409.535525 eV Total energy + Delta-G solvation = -3956.850168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.93363 -40.02726 -38.42787 -37.31107 -37.02412 -36.18293 -34.31395 -32.87468 -32.29032 -32.00579 -30.75514 -28.82253 -25.62297 -24.57934 -24.22697 -23.72939 -22.02688 -21.06079 -20.69875 -19.48894 -19.03898 -18.46277 -17.69165 -17.17654 -17.00618 -16.86061 -16.40236 -16.30331 -15.68867 -15.55740 -15.36299 -14.94093 -14.57324 -14.48085 -14.33775 -14.04260 -13.86075 -13.52052 -13.34326 -13.29184 -13.21618 -13.17513 -13.14692 -12.84719 -12.82680 -12.68954 -12.61474 -12.22586 -12.11546 -12.03901 -11.86054 -11.56378 -11.01064 -10.94989 -10.55582 -10.43298 -10.34191 -10.03055 -9.60560 -8.13550 -6.29984 -0.71811 -0.18758 0.31089 1.45784 1.48266 1.58741 1.80219 1.81143 2.37009 2.46288 2.65873 2.76217 3.16878 3.24657 3.67602 3.84900 3.92736 3.96870 4.08911 4.10927 4.29889 4.39002 4.46870 4.51807 4.59175 4.71092 4.77689 4.87219 4.95118 5.00831 5.07980 5.09779 5.26819 5.28805 5.30375 5.38699 5.46100 5.58768 5.64854 5.82723 5.87154 5.88521 5.95798 6.20279 6.78870 6.99151 7.36795 7.57819 8.91721 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003379 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.969193 B = 8283.798769 C = 9065.486845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.000 1.000 5 C -0.544 4.544 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.699 5.699 14 C 0.497 3.503 15 O -0.574 6.574 16 C 0.139 3.861 17 H 0.128 0.872 18 C -0.167 4.167 19 N -1.096 6.096 20 S 2.716 3.284 21 O -0.968 6.968 22 O -0.986 6.986 23 C -0.690 4.690 24 C -0.039 4.039 25 C -0.144 4.144 26 C -0.064 4.064 27 C -0.149 4.149 28 C -0.039 4.039 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.426 0.574 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 -0.110 -17.029 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.582 4.582 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.207 1.207 13 N -0.348 5.348 14 C 0.281 3.719 15 O -0.454 6.454 16 C 0.028 3.972 17 H 0.146 0.854 18 C -0.226 4.226 19 N -0.856 5.856 20 S 2.807 3.193 21 O -0.958 6.958 22 O -0.977 6.977 23 C -0.779 4.779 24 C -0.058 4.058 25 C -0.162 4.162 26 C -0.082 4.082 27 C -0.167 4.167 28 C -0.059 4.059 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.262 0.738 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.170 0.830 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.995 0.456 -16.776 19.533 hybrid contribution 0.871 -0.673 1.005 1.490 sum -9.124 -0.217 -15.771 18.221 Atomic orbital electron populations 1.21674 0.97057 0.98963 1.00315 1.21784 0.93627 0.99265 1.01315 1.18367 0.93592 0.89104 0.81412 0.98197 1.21625 0.91477 1.38523 1.06565 0.90737 1.25714 1.02923 0.94534 0.95166 1.70054 1.36860 1.38602 1.09890 0.85385 0.79627 0.77668 0.78175 1.18258 1.21378 1.20733 1.46203 1.15292 1.55630 1.17703 1.21004 0.82181 0.78726 0.89983 1.90662 1.52255 1.60695 1.41817 1.20748 0.83058 0.97457 0.95898 0.85425 1.22320 0.99099 0.97414 1.03773 1.55293 1.23186 1.77169 1.29957 1.01071 0.71940 0.73977 0.72279 1.93560 1.72502 1.76664 1.53040 1.93549 1.44146 1.78203 1.81767 1.30767 1.08116 1.26222 1.12836 1.21300 0.96658 0.95487 0.92349 1.21726 0.98850 0.94383 1.01254 1.21957 0.92521 1.01163 0.92590 1.21664 1.01506 0.94321 0.99231 1.21152 0.93767 0.95568 0.95375 0.95648 0.93489 0.93968 0.93886 0.91228 0.92764 0.75872 0.89023 0.91976 0.88942 0.73751 0.82715 0.82157 0.82214 0.82961 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.99 0.61 -4.61 16 2 C -0.12 -5.62 5.45 30.60 0.17 -5.45 16 3 C 0.28 13.33 2.24 44.25 0.10 13.43 16 4 H 0.00 0.01 7.58 -2.38 -0.02 -0.01 16 5 C -0.54 -27.08 8.73 25.60 0.22 -26.85 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -50.73 11.29 21.45 0.24 -50.49 16 9 Si 0.97 40.55 29.54 68.60 2.03 42.58 16 10 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.70 -25.60 4.91 -446.10 -2.19 -27.80 16 14 C 0.50 17.25 5.79 87.66 0.51 17.76 16 15 O -0.57 -24.45 13.13 -3.02 -0.04 -24.49 16 16 C 0.14 3.47 3.18 44.24 0.14 3.61 16 17 H 0.13 2.46 7.24 -2.39 -0.02 2.45 16 18 C -0.17 -3.56 9.41 71.98 0.68 -2.88 16 19 N -1.10 -27.58 5.26 -172.53 -0.91 -28.49 16 20 S 2.72 67.19 5.65 -56.49 -0.32 66.87 16 21 O -0.97 -25.59 16.54 -128.00 -2.12 -27.71 16 22 O -0.99 -29.72 17.28 -128.00 -2.21 -31.93 16 23 C -0.69 -15.68 5.81 22.27 0.13 -15.55 16 24 C -0.04 -0.74 8.92 22.27 0.20 -0.54 16 25 C -0.14 -2.24 10.05 22.27 0.22 -2.01 16 26 C -0.06 -0.97 10.05 22.27 0.22 -0.74 16 27 C -0.15 -2.65 10.05 22.27 0.22 -2.43 16 28 C -0.04 -0.87 9.52 22.27 0.21 -0.66 16 29 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 30 H 0.05 1.89 5.64 -2.39 -0.01 1.87 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 3.69 5.95 -2.39 -0.01 3.68 16 34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.41 12.14 7.96 -92.71 -0.74 11.40 16 36 H 0.09 1.76 7.64 -2.38 -0.02 1.74 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.67 7.56 -2.39 -0.02 1.66 16 39 H 0.43 11.17 8.21 -96.74 -0.79 10.38 16 40 H 0.16 2.36 7.61 -2.91 -0.02 2.34 16 41 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.14 2.96 7.62 -2.91 -0.02 2.94 16 Total: -1.00 -71.39 373.44 -1.93 -73.32 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.50 Total: 33.78 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.09 Total: -25.62 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -2.86 Total: -106.77 kcal Atomic # 8 Polarization: -79.77 SS G_CDS: -4.37 Total: -84.14 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 67.19 SS G_CDS: -0.32 Total: 66.87 kcal Total: -71.39 -1.93 -73.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.403 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds